CSPI01G13830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 9417668 .. 9419916 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGGTTATGGCCCATCACAGGGAGAGTGGCGATGGGGTATCAATGGCCACCTTGACAGCACTGGAAAATGTTGGCTTTTTGGCCCTTAATCTCAAATTAATTTATTTTAATTATTCAATTAATTTATGTTTTGATGATAACAAATCTGATTTTTTTTATTGACAATTTTATTAATTTGAATAGACCATATCGTAGAGCTTGGAAAAATGATTCTAACGCCTCTTGAATCACCCAAATCGAAGTTCAAATGAAGAAAATATTGCTAAAAGAAGCTTAACGAAAAAATACCCATGAAGGTGACGTGGCGATCAAGCATTCGATTTAGACCAATTAGAGAAAGCCACTTGGAGCAATGAAGGAGTAACAAATGTGGCTTTTTGTTATGTTTTATTGGCTTTTATAACGAAAATGAATTTAAAAGAAAAATGATTTTAATATTATTATTTTTCCCTTGTGTCTAATGGTTAGTTGTTTTAAAAGATGGTGAAGTTGCTTTATTGATTTCTTTTTAAACAAAGTATTTTGAAAAGACATATTATTATATTATTATTTGTATTGTGTCTAACGGCTAATTAAGTTTAAATCTCAACCATTCATTTTACTTTTACTTATATCTAATGACCCAAATGATTTTGAATTTATCTTTCCTCTCTTTTTAAATACTTTTCTTGAGAGCTTCTTATTGTATTGTGAGGATTAAATTTGTGAGCTTCAAATTGTATACTCACTCTTTTAGAGAGTTTTCTTTTGTGTGATTTAAAAACTTCAACATATTGTAACGGTTGGATCCTAACCCGTGGAAAGGATCGGGTTTGCTCTTGAACCCGAAAAAGGAGCAAGAATCGGTTCGGCTCAAATCCGTGGAAAGAGTCCAAAGAAGATTTTCAATCAAAATCCCAAGAGGTGCTTGGGAAAGTGGATGTAGGTTGAGTTTAACCGAACCACTATAAAATTACGGTGTCTTCTTCTCTAACTCTTTTCTAATTATTTTTTAATTTAATTTTAGTTACATATTCTTATTGGTTGAGTTTGATTGCATACTTCCATTCATATATTTTTATCAATCTTGTTATTTAACAAAGTTTACAAAGTTCTTTATTTAAATTTAAAAAGTATCTAATTAGTTGATTTTACTTTTTATTTGTCAAAAAAAGTTTATTTAAACCCTATTCACCCCCCTCTAGGGTTGCCATACCGATCCAACAATTGGTATCAGAGCAAGGTTGCTCATCTTGAAATTTTAATTTCTTGATAAACTTTATTGTTAGAGCATTATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTTCAAATTATGCATATTGGAAAGCTAGAATGAAAGTTTATTTGCAATCTATTGACTATAATTTGTGATTAATTGTTGCTAAAGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCATTTAATGCTAAGGCTATTAATTGTTTGTATTGTGCCTTGAGTAAAGATGAATTTAATAGAATATCCATGTGTTCTTCCGCTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAATGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGGCGATTCAAGAAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATCATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACTATCTCCTTGGAAGTTGATCCCGAAGATGAGGATGGCCTTGATGAAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGAAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAAGAGAAAAGGATGAGGTGATTTGTTATGAATGCAAAAGAACGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAGGCAATGAAGGCTACATGA

mRNA sequence

ATGGCCATGGTTATGGCCCATCACAGGGAGAGTGGCGATGGGGTATCAATGGCCACCTTGACAGCACTGGAAAATAGCATTATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCATTTAATGCTAAGGCTATTAATTGTTTGTATTGTGCCTTGAGTAAAGATGAATTTAATAGAATATCCATGTGTTCTTCCGCTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAATGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGGCGATTCAAGAAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATCATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACTATCTCCTTGGAAGTTGATCCCGAAGATGAGGATGGCCTTGATGAAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGAAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAAGAGAAAAGGATGAGGTGATTTGTTATGAATGCAAAAGAACGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAGGCAATGAAGGCTACATGA

Coding sequence (CDS)

ATGGCCATGGTTATGGCCCATCACAGGGAGAGTGGCGATGGGGTATCAATGGCCACCTTGACAGCACTGGAAAATAGCATTATGGCAAACCTATTGGCAAATGGTATTGTTGAAGGTCAATCTACTTCTAGACCTCCTTATTTTGATGGTCCTTATGTACCCATGAAAAATGTTGATAATGTTGATACGCCTAAATTAGAAGAAGAGTATGATGAAAATGAAATGAAAAAGTGTTCATTTAATGCTAAGGCTATTAATTGTTTGTATTGTGCCTTGAGTAAAGATGAATTTAATAGAATATCCATGTGTTCTTCCGCTCAAGAAATTTGGAATACTCTTGAAATTACTCATGAAGGAACAAATCAAGTTAAAGAGTCTAAAATTAGCATGTTTGTTCATAATTATGAATTGTTTAAGATGGATGCTAATGAGACTATCACCGATATGTTTACTAGATTTACTAACATCATAAATGCTTTGAATGGTCTTGGTAAAGTTTATACAACTTCCGAAAATGTTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGGAAGCTAAGGTAACGGCGATTCAAGAAGCAAAGGATCTCACCAAACTTCCACTAGAGGAGCTTATTGGCTCACTCATGACTCATGAGATCATCATGAAGGAGCACTTGGAGGATGAGTCCAAAAAGAAGAAGAGCATTGCATTAAAGACTATCTCCTTGGAAGTTGATCCCGAAGATGAGGATGGCCTTGATGAAGATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGAAAGAAATATTTCAAGAAACACCTATCAACCCAAAAAGAGTCAAAAGGTGAGAAAAGAGAAAAGGATGAGGTGATTTGTTATGAATGCAAAAGAACGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCATCTAAGAAATCCAAGAAGAAGGCAATGAAGGCTACATGA
Homology
[Close]
BLAST of CSPI01G13830 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-66
Identity = 150/287 (52.26%), Postives = 195/287 (67.94%), Query Frame = 1 

Query: 49  DGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQE 108
           DGP  P K VD V  PK ++E++E + +    NAKA+  L CA+ ++E+NRI  C SA+E
Sbjct: 50  DGPTFPTKLVDGVLVPKPKKEWNELDRRNFQLNAKAVFTLQCAMDRNEYNRICQCKSAKE 109

Query: 109 IWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYT 168
           IW  LEITHEGTNQVKESKI++ VHNYELF M   ETI +M TRFT I+N L  LG+V  
Sbjct: 110 IWRLLEITHEGTNQVKESKINILVHNYELFSMKETETIVEMITRFTEIVNGLEALGRVIN 169

Query: 169 TSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEI-IMKEHLEDESKKK 228
            SE V KILRSLP  W  KVTAIQEAKDLTKLP+EEL+GSLMT+EI + K+  E E KKK
Sbjct: 170 ESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQPQESEDKKK 229

Query: 229 KSIALK-TISLEVDPEDEDGLDE-DDIAYFSRKYKNFIKRKKYFKKHLSTQK-------E 288
           K+IALK T   E D E+E   +E DD+A  +RK   +++ +++  K  ++++        
Sbjct: 230 KNIALKATTKEEEDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESS 289

Query: 289 SKGEK---REKDEVICYECKRTGHIRTDCPLLK-SSKKSKKKAMKAT 322
           S G+K    EK ++IC++CK  GHI+ DCPL K  +K+  KKAM AT
Sbjct: 290 SHGDKEKWEEKSDLICFKCKNPGHIKYDCPLYKIEAKRRMKKAMMAT 336

[Close]
BLAST of CSPI01G13830 vs. TrEMBL
Match: A5BW11_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026162 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.0e-66
Identity = 151/287 (52.61%), Postives = 193/287 (67.25%), Query Frame = 1 

Query: 49  DGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQE 108
           DGP  P K VD V  PK ++E++E + +    NAK +  L CA+ ++E+NRI  C SA+E
Sbjct: 18  DGPTFPTKLVDGVLVPKPKQEWNELDRRNFQLNAKVVFTLQCAMDRNEYNRICQCKSAKE 77

Query: 109 IWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYT 168
           IW  LEITHEGTNQVKESKI++ VHNYELF M   ETI +M TRFT+I+N L  LGK Y 
Sbjct: 78  IWRLLEITHEGTNQVKESKINLLVHNYELFSMKETETIVEMITRFTDIVNGLEALGKTYK 137

Query: 169 TSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEI-IMKEHLEDESKKK 228
            SE V KILR LP  W  K+TAIQEAKDLTKLP+EEL+GSLMT+EI + K+  E E KKK
Sbjct: 138 ESEKVMKILRFLPSKWHTKLTAIQEAKDLTKLPMEELVGSLMTYEINLTKKLQEGEDKKK 197

Query: 229 KSIALK-TISLEVDPEDEDGLDE-DDIAYFSRKYKNFIKRKKY-FKKHLSTQKESKGEK- 288
           KSIALK T   E D E+E   DE DD+A  +RK   +++ +++  +K  S +  SK E  
Sbjct: 198 KSIALKATTKEEEDVEEEKPSDEDDDLALITRKLNKYMRGERFRGRKFTSRRDPSKKESS 257

Query: 289 --------REKDEVICYECKRTGHIRTDCPLLKS-SKKSKKKAMKAT 322
                    EK ++ C++CK+ GHI+ DCPL KS +K+  KKAM AT
Sbjct: 258 SHGDNEKWEEKRDLTCFKCKKLGHIKYDCPLYKSEAKRIMKKAMMAT 304

[Close]
BLAST of CSPI01G13830 vs. TrEMBL
Match: A5AQM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.2e-65
Identity = 148/287 (51.57%), Postives = 194/287 (67.60%), Query Frame = 1 

Query: 49  DGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQE 108
           DGP  P K VD V  PK ++E++E + +    NAK +  L CA+ ++E+NRI  C S +E
Sbjct: 50  DGPTFPTKLVDGVLVPKPKQEWNELDRRNFQLNAKVVFTLQCAMDRNEYNRICQCKSIKE 109

Query: 109 IWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYT 168
           IW  LEITHEGTNQVKESKI++ VHNYELF M   E+I +M TRFT I+N L  LGKV  
Sbjct: 110 IWRLLEITHEGTNQVKESKINILVHNYELFSMKETESIVEMITRFTEIVNGLEALGKVIX 169

Query: 169 TSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHL-EDESKKK 228
            SE V KILRSLP  W  KVTAIQEAKDLTKLP+EEL+GSLMT+EI + + L E E KKK
Sbjct: 170 ESEKVIKILRSLPSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQLQESEDKKK 229

Query: 229 KSIALK-TISLEVDPEDEDGLDE-DDIAYFSRKYKNFIKRKKYFKKHLSTQK-------E 288
           KSIALK T   E D E+E   +E DD+A  +RK   +++ +++  K  ++++        
Sbjct: 230 KSIALKATTKEEEDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESS 289

Query: 289 SKGEKRE---KDEVICYECKRTGHIRTDCPLLK-SSKKSKKKAMKAT 322
           S G+K +   K ++IC++CK+ GHI+ DCPL K  +K+  KKAM AT
Sbjct: 290 SHGDKEKWEXKGDLICFKCKKPGHIKYDCPLYKIEAKRRMKKAMMAT 336

[Close]
BLAST of CSPI01G13830 vs. TrEMBL
Match: A5BID8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015625 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.7e-64
Identity = 148/287 (51.57%), Postives = 193/287 (67.25%), Query Frame = 1 

Query: 49  DGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQE 108
           D P  P K VD V  PK + E++E + +    NAK +  L CA+ ++E+NRI  C SA+E
Sbjct: 18  DDPTFPTKLVDGVLVPKPKHEWNELDRRNFQLNAKVVFTLQCAMDRNEYNRICQCKSAKE 77

Query: 109 IWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYT 168
           IW  L ITH+GTNQVKESKI++ VHNYELF M   ETI +M TRFT+I+N L  LGK Y 
Sbjct: 78  IWRLLGITHKGTNQVKESKINLLVHNYELFSMKEIETIVEMITRFTDIVNGLEALGKTYK 137

Query: 169 TSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEI-IMKEHLEDESKKK 228
            SE V KILRSLP  W  KVTAIQ+AKDLTKLP+EELIGSLMT+EI + K+  E E KKK
Sbjct: 138 KSEKVMKILRSLPSKWHTKVTAIQKAKDLTKLPMEELIGSLMTYEINLTKKLQEGEDKKK 197

Query: 229 KSIALK-TISLEVDPEDEDGLDE-DDIAYFSRKYKNFIKRKKYFKKHLSTQKE------- 288
           KSI LK T   E D E+E   DE DD+A  +RK   +++ +++  + L+++++       
Sbjct: 198 KSITLKATTKEEEDVEEEKSSDEDDDLALITRKLNKYMRGERFRGRKLTSRRDPSKNESS 257

Query: 289 SKGEK---REKDEVICYECKRTGHIRTDCPLLKS-SKKSKKKAMKAT 322
           S G+K    EK  + C++CK+ GHI+ DCPL KS +K+  KKAM AT
Sbjct: 258 SHGDKEKWEEKRYLKCFKCKKLGHIKYDCPLYKSEAKRRMKKAMMAT 304

[Close]
BLAST of CSPI01G13830 vs. TrEMBL
Match: A5AZ66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004930 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.6e-62
Identity = 139/287 (48.43%), Postives = 192/287 (66.90%), Query Frame = 1 

Query: 49  DGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQE 108
           DGP  P K VD +  PK ++E++E + +    NAK    L CA+ ++E+N I  C SA+E
Sbjct: 50  DGPTFPTKLVDGILVPKPKQEWNELDRRIFQLNAKVAFTLQCAMDRNEYNIICQCKSAKE 109

Query: 109 IWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYT 168
           IW  LEITHE TNQVKESKI++ +HNYELF +  NETI +M TRFTNI+N L  LGK Y 
Sbjct: 110 IWRLLEITHEETNQVKESKINLLIHNYELFLIKENETIVEMITRFTNIVNGLEALGKTYK 169

Query: 169 TSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEI-IMKEHLEDESKKK 228
            SE V KILR LP  W  KVT IQEAKDLTKLP+EELIGSLMT+EI + K+  E E KKK
Sbjct: 170 ESEKVMKILRLLPSKWHTKVTTIQEAKDLTKLPIEELIGSLMTYEINLAKKLQESEDKKK 229

Query: 229 KSIALKTISLEVD--PEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKE------- 288
           K+IALK  + E +   E++   ++DD+A  +RK   +++ +++  +  +++++       
Sbjct: 230 KNIALKATTKEKEDFEEEKPSEEDDDLALITRKLNKYMRGERFKGRRFTSRRDISKKESS 289

Query: 289 SKGEK---REKDEVICYECKRTGHIRTDCPLLKS-SKKSKKKAMKAT 322
           S G+K    EK +++C++ K+ GHI+ DCPL KS +K+  KKAM  T
Sbjct: 290 SHGDKEKWEEKRDLVCFKSKKPGHIKYDCPLYKSEAKRRMKKAMMVT 336

[Close]
BLAST of CSPI01G13830 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 2.8e-155
Identity = 290/322 (90.06%), Postives = 292/322 (90.68%), Query Frame = 1 

Query: 28  MANLLANGIVEGQSTSRPPYFD----------------------------GPYVPMKNVD 87
           MANLLANGIVEGQSTSRPPYFD                            GPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 88  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 147
           NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 148 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYTTSENVRKILRS 207
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINAL GLGKVYTTSENVRKILRS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 208 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 267
           LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 240

Query: 268 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKREKDEVICYECKRTGH 322
           DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEK +KDEVICYECKR+GH
Sbjct: 241 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSGH 300

[Close]
BLAST of CSPI01G13830 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 2.8e-155
Identity = 290/322 (90.06%), Postives = 292/322 (90.68%), Query Frame = 1 

Query: 28  MANLLANGIVEGQSTSRPPYFD----------------------------GPYVPMKNVD 87
           MANLLANGIVEGQSTSRPPYFD                            GPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 88  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 147
           NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 148 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYTTSENVRKILRS 207
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINAL GLGKVYTTSENVRKILRS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 208 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 267
           LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 240

Query: 268 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKREKDEVICYECKRTGH 322
           DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEK +KDEVICYECKR+GH
Sbjct: 241 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSGH 300

[Close]
BLAST of CSPI01G13830 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 554.3 bits (1427), Expect = 1.4e-154
Identity = 289/322 (89.75%), Postives = 291/322 (90.37%), Query Frame = 1 

Query: 28  MANLLANGIVEGQSTSRPPYFD----------------------------GPYVPMKNVD 87
           MANLLANGIVEGQSTSRPPYFD                            GPYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 88  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 147
           NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 120

Query: 148 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYTTSENVRKILRS 207
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIIN L GLGKVYTTSENVRKILRS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINDLKGLGKVYTTSENVRKILRS 180

Query: 208 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 267
           LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 240

Query: 268 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKREKDEVICYECKRTGH 322
           DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEK +KDEVICYECKR+GH
Sbjct: 241 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSGH 300

[Close]
BLAST of CSPI01G13830 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 477.2 bits (1227), Expect = 2.2e-131
Identity = 260/322 (80.75%), Postives = 262/322 (81.37%), Query Frame = 1 

Query: 28  MANLLANGIVEGQSTSRPPYFDG----------------------------PYVPMKNVD 87
           MANLLANGIVEGQSTSRPPYFDG                            PYVPMKNVD
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGSNYAYWKARMKIYLQSIDYNLWLIVAKGPYVPMKNVD 60

Query: 88  NVDTPKLEEEYDENEMKKCSFNAKAINCLYCALSKDEFNRISMCSSAQEIWNTLEITHEG 147
           NVDTPKLEEE                              ISMCSSAQEIWNTLEITHEG
Sbjct: 61  NVDTPKLEEE------------------------------ISMCSSAQEIWNTLEITHEG 120

Query: 148 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALNGLGKVYTTSENVRKILRS 207
           TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINAL GLGKVYTTSENVRKILRS
Sbjct: 121 TNQVKESKISMFVHNYELFKMDANETITDMFTRFTNIINALKGLGKVYTTSENVRKILRS 180

Query: 208 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 267
           LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV
Sbjct: 181 LPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLEDESKKKKSIALKTISLEV 240

Query: 268 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKREKDEVICYECKRTGH 322
           DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEK +KDEVICYECKR+GH
Sbjct: 241 DPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKRSGH 292

[Close]
BLAST of CSPI01G13830 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 435.6 bits (1119), Expect = 7.3e-119
Identity = 233/294 (79.25%), Postives = 239/294 (81.29%), Query Frame = 1 

Query: 28  MANLLANGIVEGQSTSRPPYFDGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINC 87
           MANLLANGIVEGQSTSRPPYFDGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINC
Sbjct: 1   MANLLANGIVEGQSTSRPPYFDGPYVPMKNVDNVDTPKLEEEYDENEMKKCSFNAKAINC 60

Query: 88  LYCALSKDEFNRISMCSSAQEIWNTLEITHEGTNQVKESKISMFVHNYELFKMDANETIT 147
           LYC LSKDE NRISMCSSAQEIWNTLEITHEGTNQ                       + 
Sbjct: 61  LYCTLSKDEVNRISMCSSAQEIWNTLEITHEGTNQ----------------------GLG 120

Query: 148 DMFTRFTNIINALNGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIG 207
            ++T   N+   L  L K                  WEAKVTAIQEAKDLTKLPLEELIG
Sbjct: 121 KVYTTSENVRKILRSLPKT-----------------WEAKVTAIQEAKDLTKLPLEELIG 180

Query: 208 SLMTHEIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKK 267
           SLMTHEIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKK
Sbjct: 181 SLMTHEIIMKEHLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKK 240

Query: 268 YFKKHLSTQKESKGEKREKDEVICYECKRTGHIRTDCPLLKSSKKSKKKAMKAT 322
           YFKKHLSTQKESKGEK +KDEVICYECKR+GHIRTDCPLLKSSKKSKKKAMKAT
Sbjct: 241 YFKKHLSTQKESKGEKSKKDEVICYECKRSGHIRTDCPLLKSSKKSKKKAMKAT 255

The following BLAST results are available for this feature:
BLAST of CSPI01G13830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13830 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C8K0_VITVI1.3e-6652.26Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BW11_VITVI5.0e-6652.61Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026162 PE=4 SV=1[more]
A5AQM5_VITVI3.2e-6551.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1[more]
A5BID8_VITVI4.7e-6451.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015625 PE=4 SV=1[more]
A5AZ66_VITVI2.6e-6248.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004930 PE=4 SV=1[more]
BLAST of CSPI01G13830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730802|ref|XP_011659859.1|2.8e-15590.06PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
gi|778665012|ref|XP_011648465.1|2.8e-15590.06PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778688574|ref|XP_011652782.1|1.4e-15489.75PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|2.2e-13180.75PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
gi|778708527|ref|XP_011656224.1|7.3e-11979.25PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13830.1CSPI01G13830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 281..306
score: 4.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 290..305
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 290..306
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 291..305
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 277..311
score: 5.0
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 67..320
score: 1.9
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 67..320
score: 1.9
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 81..218
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13830Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13830Cucurbita pepo (Zucchini)cpecpiB805
CSPI01G13830Bottle gourd (USVL1VR-Ls)cpilsiB046
CSPI01G13830Melon (DHL92) v3.6.1cpimedB011
CSPI01G13830Cucumber (Gy14) v2cgybcpiB001
CSPI01G13830Silver-seed gourdcarcpiB0192
CSPI01G13830Cucumber (Chinese Long) v3cpicucB001
CSPI01G13830Watermelon (97103) v2cpiwmbB002
CSPI01G13830Wax gourdcpiwgoB017
CSPI01G13830Wax gourdcpiwgoB049
CSPI01G13830Cucurbita maxima (Rimu)cmacpiB163
CSPI01G13830Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13830Cucurbita moschata (Rifu)cmocpiB148
CSPI01G13830Cucurbita moschata (Rifu)cmocpiB192
CSPI01G13830Cucumber (Chinese Long) v2cpicuB000
CSPI01G13830Melon (DHL92) v3.5.1cpimeB011
CSPI01G13830Watermelon (Charleston Gray)cpiwcgB017
CSPI01G13830Watermelon (97103) v1cpiwmB057