CSPI01G13770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 9347379 .. 9348200 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGACAAAAAGAGAAAAAGACAAGGCACACAGGGAGGATGAACGTCTTCGCCAATTATCTGCAAAGAAAAAGCAAAGTATCACCTTCCTAGAAGGAGCGAAGAGTAAGTTAGCGGAGATGCAAGCCACTGAGAAGAGAAAACTTGATACCCTCGCAGACTTAAGCGAGCAGGTAAACAGGGTGGCCGCCGCGAATGAAGCGATGAAAAAACAGGAAATTGACCACATGATATTGTGGCTGAAGAACTGACACAGGAAATTGAAAGAATGAGTTGTACGGAATCATTAATGCAAACTGAAGAACTCGAGCTTCTAAGCAGCAAATATCCTCAGAAAGGAAAAGGCCAAGGTAGGGACATCCATACCTAAGGATGATAGAAAAAGGGAAAATGATGGATACCCAAGATCTAGAAAGAATCATAAAGATTGAAAATTGCTATCTTTTAATGGGCTATTACCCGACTTTCTCTGCTGTCCAATCAAGGCGCTCTAATGAGAGAAGTTTTTTATAGGTGAAACAAAGATAAGGTTGGATCTGGTCGAGATATTTTATGCAGCAAATTTCCACCCTCAGGAATCATATGTCGTAGTGGAAGGAGAGAAAGTCTCATTCACTTTGGAAGAGATTAATGAGTTGTACGACCTACTTAATGACCCTGAAGCATACTCCGACCAGAGCATTATTGATAGCCCAATGCGGAGAGATGCGAAAAAGGTTAACCAATTAATCGCAAGGCTAAGGGCTAAGTGGACAAAAACACCAATTGAAAGACTTCAACAGTTCCCACACCAGTTGACAACCAAGGCAAAAGTCTGA

mRNA sequence

ATGATGGTGACAAAAAGAGAAAAAGACAAGGCACACAGGGAGGATGAACGTCTTCGCCAATTATCTGCAAAGAAAAAGCAAAGTATCACCTTCCTAGAAGGAGCGAAGAGTAAGTTAGCGGAGATGCAAGCCACTGAGAAGAGAAAACTTGATACCCTCGCAGACTTAAGCGAGCAGGAAATTGAAAGAATGAGTTGTACGGAATCATTAATGCAAACTGAAGAACTCGAGCTTCTAAGCAGCAAATATCCTCAGAAAGGAAAAGGCCAAGCAAATTTCCACCCTCAGGAATCATATGTCGTAGTGGAAGGAGAGAAAGTCTCATTCACTTTGGAAGAGATTAATGAGTTGTACGACCTACTTAATGACCCTGAAGCATACTCCGACCAGAGCATTATTGATAGCCCAATGCGGAGAGATGCGAAAAAGGTTAACCAATTAATCGCAAGGCTAAGGGCTAAGTGGACAAAAACACCAATTGAAAGACTTCAACAGTTCCCACACCAGTTGACAACCAAGGCAAAAGTCTGA

Coding sequence (CDS)

ATGATGGTGACAAAAAGAGAAAAAGACAAGGCACACAGGGAGGATGAACGTCTTCGCCAATTATCTGCAAAGAAAAAGCAAAGTATCACCTTCCTAGAAGGAGCGAAGAGTAAGTTAGCGGAGATGCAAGCCACTGAGAAGAGAAAACTTGATACCCTCGCAGACTTAAGCGAGCAGGAAATTGAAAGAATGAGTTGTACGGAATCATTAATGCAAACTGAAGAACTCGAGCTTCTAAGCAGCAAATATCCTCAGAAAGGAAAAGGCCAAGCAAATTTCCACCCTCAGGAATCATATGTCGTAGTGGAAGGAGAGAAAGTCTCATTCACTTTGGAAGAGATTAATGAGTTGTACGACCTACTTAATGACCCTGAAGCATACTCCGACCAGAGCATTATTGATAGCCCAATGCGGAGAGATGCGAAAAAGGTTAACCAATTAATCGCAAGGCTAAGGGCTAAGTGGACAAAAACACCAATTGAAAGACTTCAACAGTTCCCACACCAGTTGACAACCAAGGCAAAAGTCTGA
Homology
[Close]
BLAST of CSPI01G13770 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-12
Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 1 

Query: 1   MMVTKREKDKAHREDERLRQLSAKKKQSITFLEGAKSKLAEMQATEKRKLDTLADLSEQ- 60
           MMVTKREK+KA  EDE LRQLS KK++S+TFL  AKSKLAE++A ++ K DTLADLSEQ 
Sbjct: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60

Query: 61  ---------------------------EIERMSCTESLMQTEELELLSSKYPQKGKGQAN 98
                                      EIERMS TES  Q E+  LLS+K   K + +A 
Sbjct: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120

[Close]
BLAST of CSPI01G13770 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 1 

Query: 1   MMVTKREKDKAHREDERLRQLSAKKKQSITFLEGAKSKLAEMQATEKRKLDTLADLSEQ- 60
           MMVTKREK+KA  EDE LRQLS KK++S+TFL  AKSKLAE++A ++ K DTLADLSEQ 
Sbjct: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60

Query: 61  ---------------------------EIERMSCTESLMQTEELELLSSKYPQKGKGQAN 98
                                      EIERMS TES  Q E+  LLS+K   K + +A 
Sbjct: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120

The following BLAST results are available for this feature:
BLAST of CSPI01G13770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9V9_CUCSA8.7e-1248.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1[more]
BLAST of CSPI01G13770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202631|gb|KGN57764.1|1.2e-1148.00hypothetical protein Csa_3G283010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13770.1CSPI01G13770.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13770Cucumber (Chinese Long) v2cpicuB000
CSPI01G13770Melon (DHL92) v3.5.1cpimeB011
CSPI01G13770Watermelon (Charleston Gray)cpiwcgB017
CSPI01G13770Watermelon (97103) v1cpiwmB057
CSPI01G13770Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13770Bottle gourd (USVL1VR-Ls)cpilsiB046
CSPI01G13770Melon (DHL92) v3.6.1cpimedB011
CSPI01G13770Cucumber (Gy14) v2cgybcpiB001
CSPI01G13770Silver-seed gourdcarcpiB0192
CSPI01G13770Cucumber (Chinese Long) v3cpicucB001
CSPI01G13770Watermelon (97103) v2cpiwmbB002
CSPI01G13770Wax gourdcpiwgoB017
CSPI01G13770Wax gourdcpiwgoB049
CSPI01G13770Cucumber (Gy14) v1cgycpiB326
CSPI01G13770Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13770Cucurbita moschata (Rifu)cmocpiB192