CSPI01G13530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr1 : 9006156 .. 9006542 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGCAACCTATGGTGCCATAGTTTTAAACCTAAGTGATAATGTTCTTAGGGAAGTCATTAATGAAGAAACAACTTATGGAATGTGGACAAAATTGGATGAAATATATAAGTCCAAAGATCTACCTAACCATGCATACGTAAGGGAGAGATTCTTTACCTTCAAGGTGGATGACAACAAATCTTTGATAGACAATCTTGGAGAATTCAAGAAGTTGTCTTCAGATTTCAAAGAATTGGGAGACAGGATTGATGATGAAAATGAATCCTTCATTTTACTTAATTCACTCCCAGAAGCATACAAAGAAGTAAAGATGACTCTCAAATATGGAAGGCAAAAAATCACCACAAAGGATGTTATTTCAGTAATAAAAATAAGAGAA

mRNA sequence

ATGGAGAATGCAACCTATGGTGCCATAGTTTTAAACCTAAGTGATAATGTTCTTAGGGAAGTCATTAATGAAGAAACAACTTATGGAATGTGGACAAAATTGGATGAAATATATAAGTCCAAAGATCTACCTAACCATGCATACGTAAGGGAGAGATTCTTTACCTTCAAGGTGGATGACAACAAATCTTTGATAGACAATCTTGGAGAATTCAAGAAGTTGTCTTCAGATTTCAAAGAATTGGGAGACAGGATTGATGATGAAAATGAATCCTTCATTTTACTTAATTCACTCCCAGAAGCATACAAAGAAGTAAAGATGACTCTCAAATATGGAAGGCAAAAAATCACCACAAAGGATGTTATTTCAGTAATAAAAATAAGAGAA

Coding sequence (CDS)

ATGGAGAATGCAACCTATGGTGCCATAGTTTTAAACCTAAGTGATAATGTTCTTAGGGAAGTCATTAATGAAGAAACAACTTATGGAATGTGGACAAAATTGGATGAAATATATAAGTCCAAAGATCTACCTAACCATGCATACGTAAGGGAGAGATTCTTTACCTTCAAGGTGGATGACAACAAATCTTTGATAGACAATCTTGGAGAATTCAAGAAGTTGTCTTCAGATTTCAAAGAATTGGGAGACAGGATTGATGATGAAAATGAATCCTTCATTTTACTTAATTCACTCCCAGAAGCATACAAAGAAGTAAAGATGACTCTCAAATATGGAAGGCAAAAAATCACCACAAAGGATGTTATTTCAGTAATAAAAATAAGAGAA

Homology

[Close]

BLAST of CSPI01G13530 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-18
Identity = 42/129 (32.56%), Postives = 79/129 (61.24%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           ++     AI L+LSD+V+  +I+E+T  G+WT+L+ +Y SK L N  Y++++ +   + +
Sbjct: 55  LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
             + + +L  F  L +    LG +I++E+++ +LLNSLP +Y  +  T+ +G+  I  KD
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKD 174

Query: 121 VISVIKIRE 130
           V S + + E
Sbjct: 175 VTSALLLNE 183

[Close]

BLAST of CSPI01G13530 vs. TrEMBL
Match: A5AQ94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017821 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 47/129 (36.43%), Postives = 81/129 (62.79%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           ++   Y  I+L L D  LRE   E T  G+W KL+++Y    L N  Y++ER + FK+ +
Sbjct: 55  IDEKAYHLIILALGDKALREFSEETTAKGVWNKLEQLYMQNSLSNRLYLKERLYGFKMQE 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
           ++S+ DNL +F K+  +   +G ++DDE+++ ++L SLP  Y   K T+KYGR+ +T ++
Sbjct: 115 DRSIADNLDDFAKIVLEMSNIGIKVDDEDKAVLVLKSLPGLYSNFKETMKYGRKTLTLEE 174

Query: 121 VISVIKIRE 130
           V S ++ +E
Sbjct: 175 VQSALRSKE 183

[Close]

BLAST of CSPI01G13530 vs. TrEMBL
Match: A0A151SF29_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024760 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 47/129 (36.43%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           M+   + AI+L+L D VLR+V  E+T  G+W+KL+ +Y +K L N  Y+++  ++F +++
Sbjct: 55  MQEKAHSAIILSLGDKVLRQVSKEKTAAGIWSKLESLYMTKSLVNRLYLKQSLYSFNMNE 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
           NK + + L +F KL  D + +   IDDE+++ +LL SLP AY   K T+ +GR  ++  +
Sbjct: 115 NKPVGEQLDQFNKLILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDE 174

Query: 121 VISVIKIRE 130
           V + I  +E
Sbjct: 175 VQAAINSKE 183

[Close]

BLAST of CSPI01G13530 vs. TrEMBL
Match: A0A151TDZ5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_011458 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 47/129 (36.43%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           M+   + AI+L+L D VLR+V  E+T  G+W+KL+ +Y +K L N  Y+++  ++FK+++
Sbjct: 32  MQEKAHSAIILSLGDKVLRQVSKEKTAAGIWSKLESLYMTKSLVNRLYLKQSLYSFKMNE 91

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
           +K + + L +F KL  D + +   IDDE+++ +LL SLP AY   K T+ +GR  ++  +
Sbjct: 92  DKPVGEQLDQFNKLILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDE 151

Query: 121 VISVIKIRE 130
           V + I  +E
Sbjct: 152 VQAAINSKE 160

[Close]

BLAST of CSPI01G13530 vs. TrEMBL
Match: A5AM57_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025494 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-19
Identity = 48/112 (42.86%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 17  VLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLIDNLGEFKKLSS 76
           VLR+V +E+T   +W KL+ +Y+++ LPNH Y++E  + FK++++K + D L EF KL  
Sbjct: 91  VLRKVFHEKTIARVWKKLEGLYRTRALPNHIYLKEHLYGFKIEESKPIDDALDEFNKLVL 150

Query: 77  DFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVIKIR 129
           D + L  +++DE+++ ILLNSLP++ K  K TLKYGR  IT  DV + +  +
Sbjct: 151 DLESLDFKVEDEDKAIILLNSLPKSLKHFKETLKYGRDAITFDDVQNALNAK 202

[Close]

BLAST of CSPI01G13530 vs. TrEMBL
Match: A0A151TCU2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019424 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-19
Identity = 47/129 (36.43%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           M+   + AI+L+L D VLR+V  E+T  G+W+KL+ +Y +K L N  Y+++  ++FK+++
Sbjct: 55  MQEKAHSAIILSLGDKVLRQVSKEKTAAGIWSKLESLYMTKSLVNRLYLKQSLYSFKMNE 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
           +K + + L  F KL  D + +   IDDE+++ +LL SLP AY   K T+ +GR  ++  +
Sbjct: 115 DKPVGEQLDHFNKLILDLENIDVTIDDEDQALLLLCSLPRAYSHFKETMLFGRDSVSIDE 174

Query: 121 VISVIKIRE 130
           V + I  +E
Sbjct: 175 VQAAINSKE 183

[Close]

BLAST of CSPI01G13530 vs. NCBI nr
Match: gi|659123171|ref|XP_008461529.1| (PREDICTED: uncharacterized protein LOC103500101 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 84/131 (64.12%), Postives = 103/131 (78.63%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           M+NATY  I+LNL  NVLR+VI++ETTYGMW KLDE+Y+ KDLPN  Y+RERFFTFK+D 
Sbjct: 55  MKNATYVFIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDS 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVK--MTLKYGRQKITT 120
           NKSLI+NLGEFKKLS+DFK+L ++I DENESFILLN      K+ K    ++ GRQ+IT 
Sbjct: 115 NKSLIENLGEFKKLSTDFKDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGRQEITI 174

Query: 121 KDVISVIKIRE 130
            D+I  IK RE
Sbjct: 175 DDIIPGIKTRE 185

[Close]

BLAST of CSPI01G13530 vs. NCBI nr
Match: gi|848898962|ref|XP_012849618.1| (PREDICTED: uncharacterized protein LOC105969411 [Erythranthe guttata])

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 50/129 (38.76%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           ++   Y AI+LNLSD+V+R+V   ++  G+W KLDE+Y    LP+  ++ E+FF FK+D 
Sbjct: 494 LDELAYSAIILNLSDSVIRKVGMHDSAKGLWEKLDELYTETSLPSKLFLLEKFFRFKLDL 553

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
            K + +N+ +F +L  D K  GD+  D     +LLN++P++Y ++K  +KYGR  I+   
Sbjct: 554 TKDIDENIDQFTRLVQDIKLTGDKSIDNYTPIVLLNAIPDSYNDLKSAIKYGRDNISLDT 613

Query: 121 VISVIKIRE 130
           VI+ +K +E
Sbjct: 614 VINGLKSKE 622

[Close]

BLAST of CSPI01G13530 vs. NCBI nr
Match: gi|747053728|ref|XP_011073037.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Sesamum indicum])

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 51/124 (41.13%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 6   YGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLI 65
           Y +IVLNLSD VLR+V   E++  +W KL+E++    LPN  ++ E+ F +K+D +K++ 
Sbjct: 56  YSSIVLNLSDTVLRKVGKLESSKALWDKLEELFTEISLPNKLFLLEKIFRYKLDLSKNID 115

Query: 66  DNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVI 125
           +NL +F KL  D K  GD+  DE    +LLN++PE++ +VK  +KYGR  I  + V++ +
Sbjct: 116 ENLDDFTKLIQDIKLAGDKYIDEYSPIVLLNAIPESFSDVKAAIKYGRDSINLETVVNGL 175

Query: 126 KIRE 130
           K +E
Sbjct: 176 KSKE 179

[Close]

BLAST of CSPI01G13530 vs. NCBI nr
Match: gi|147855968|emb|CAN80304.1| (hypothetical protein VITISV_017821 [Vitis vinifera])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 47/129 (36.43%), Postives = 81/129 (62.79%), Query Frame = 1


Query: 1   MENATYGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDD 60
           ++   Y  I+L L D  LRE   E T  G+W KL+++Y    L N  Y++ER + FK+ +
Sbjct: 55  IDEKAYHLIILALGDKALREFSEETTAKGVWNKLEQLYMQNSLSNRLYLKERLYGFKMQE 114

Query: 61  NKSLIDNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKD 120
           ++S+ DNL +F K+  +   +G ++DDE+++ ++L SLP  Y   K T+KYGR+ +T ++
Sbjct: 115 DRSIADNLDDFAKIVLEMSNIGIKVDDEDKAVLVLKSLPGLYSNFKETMKYGRKTLTLEE 174

Query: 121 VISVIKIRE 130
           V S ++ +E
Sbjct: 175 VQSALRSKE 183

[Close]

BLAST of CSPI01G13530 vs. NCBI nr
Match: gi|747046711|ref|XP_011100917.1| (PREDICTED: uncharacterized protein LOC105179028 [Sesamum indicum])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 1


Query: 6   YGAIVLNLSDNVLREVINEETTYGMWTKLDEIYKSKDLPNHAYVRERFFTFKVDDNKSLI 65
           Y +I+LNLSDNVLR+V  + ++  +W KL+++Y    LP+  ++ E+ F +K+D +KS+ 
Sbjct: 56  YSSIILNLSDNVLRKVGKQSSSKDLWEKLEDLYTETSLPSKLFLLEKKFHYKLDLSKSID 115

Query: 66  DNLGEFKKLSSDFKELGDRIDDENESFILLNSLPEAYKEVKMTLKYGRQKITTKDVISVI 125
           +NL +F KL  D K  GD+  DE    +LLN++P++Y + K  +KYGR  +    V++ +
Sbjct: 116 ENLDDFTKLIQDIKLTGDKNIDEYSPIVLLNAIPKSYSDAKAAIKYGRDSVNLDTVVNGL 175

Query: 126 KIRE 130
           K +E
Sbjct: 176 KSKE 179

The following BLAST results are available for this feature:

BLAST of CSPI01G13530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.9e-18	32.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CSPI01G13530 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AQ94_VITVI	1.7e-20	36.43	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017821 PE=4 SV=1	[more]
A0A151SF29_CAJCA	3.1e-19	36.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151TDZ5_CAJCA	3.1e-19	36.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5AM57_VITVI	4.1e-19	42.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025494 PE=4 SV=1	[more]
A0A151TCU2_CAJCA	5.3e-19	36.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CSPI01G13530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123171\|ref\|XP_008461529.1\|	3.7e-37	64.12	PREDICTED: uncharacterized protein LOC103500101 [Cucumis melo]	[more]
gi\|848898962\|ref\|XP_012849618.1\|	3.7e-21	38.76	PREDICTED: uncharacterized protein LOC105969411 [Erythranthe guttata]	[more]
gi\|747053728\|ref\|XP_011073037.1\|	1.8e-20	41.13	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Sesamum ...	[more]
gi\|147855968\|emb\|CAN80304.1\|	2.4e-20	36.43	hypothetical protein VITISV_017821 [Vitis vinifera]	[more]
gi\|747046711\|ref\|XP_011100917.1\|	1.5e-19	38.71	PREDICTED: uncharacterized protein LOC105179028 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13530.1	CSPI01G13530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 7..129 score: 3.8
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 7..129 score: 3.8
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..127 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13530	Watermelon (97103) v2	cpiwmbB034
CSPI01G13530	Wax gourd	cpiwgoB017
CSPI01G13530	Wax gourd	cpiwgoB049
CSPI01G13530	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13530	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13530	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13530	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13530	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13530	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13530	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13530	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13530	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13530	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13530	Watermelon (97103) v1	cpiwmB007
CSPI01G13530	Watermelon (97103) v1	cpiwmB012
CSPI01G13530	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13530	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13530	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13530	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13530	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13530	Silver-seed gourd	carcpiB0477
CSPI01G13530	Silver-seed gourd	carcpiB1105
CSPI01G13530	Cucumber (Chinese Long) v3	cpicucB001