CSPI01G13510 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13510
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 8957433 .. 8958115 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGATCCTAAGAGACGGGGGAAGCCCGTCTGATAGCGCGGAAGCGCGAACTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGTGGCGGCTGACGGCAACGTAAGGGATTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGTGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGATCGAGTGCCTCTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCCTCGGGAGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAA

mRNA sequence

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCCTCGGGAGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAA

Coding sequence (CDS)

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTTGGTGGACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCCTCGGGAGCCTTCCCCGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAA

Homology

[Close]

BLAST of CSPI01G13510 vs. TrEMBL
Match: A0A0D2Q518_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G276600 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.5e-49
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL   CSSC RGESGSPRAGRGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLPAHCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          RLPR PSPG EQSTQNWYGQGESDCLIKTKHCDGPCGC
Sbjct: 61 RLPRGPSPGDEQSTQNWYGQGESDCLIKTKHCDGPCGC 98

[Close]

BLAST of CSPI01G13510 vs. TrEMBL
Match: A0A0S3TEK1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG125100 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 91/98 (92.86%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL VDCSSC RGESGS RAGRGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R  R  SPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC
Sbjct: 61 RALRASSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 98

[Close]

BLAST of CSPI01G13510 vs. TrEMBL
Match: M1BN50_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402019042 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.1e-47
Identity = 90/98 (91.84%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAKWIRN GKRIGSEGWARGSQSRTRRL VDCSSC RGESGSPRAGRGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R  R PSPGVEQ TQNWYGQGESDCLIKTKHCDGP GC
Sbjct: 61 RFLRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPNGC 98

[Close]

BLAST of CSPI01G13510 vs. TrEMBL
Match: B6SQP7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRLL +CSSC RGESG PRAGRGTD E
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLLAECSSCSRGESGPPRAGRGTDRE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R PR PSPGVEQ TQNWYGQGESDCLIKTKHCDGP GC
Sbjct: 61 RPPRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPRGC 98

[Close]

BLAST of CSPI01G13510 vs. TrEMBL
Match: C6JSJ8_SORBI (Putative uncharacterized protein Sb1138s002030 OS=Sorghum bicolor GN=Sb1138s002030 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-41
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRL  DCSSC RGESG PRAGRGTD E
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGTDRE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R  R PSPGVEQ TQNWYGQGESDCLIKTKHCDGP GC
Sbjct: 61 RFLRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPHGC 98

[Close]

BLAST of CSPI01G13510 vs. NCBI nr
Match: gi|763744275|gb|KJB11774.1| (hypothetical protein B456_001G276600 [Gossypium raimondii])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL   CSSC RGESGSPRAGRGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLPAHCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          RLPR PSPG EQSTQNWYGQGESDCLIKTKHCDGPCGC
Sbjct: 61 RLPRGPSPGDEQSTQNWYGQGESDCLIKTKHCDGPCGC 98

[Close]

BLAST of CSPI01G13510 vs. NCBI nr
Match: gi|965674227|dbj|BAU03535.1| (hypothetical protein VIGAN_UM125100 [Vigna angularis var. angularis])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 91/98 (92.86%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL VDCSSC RGESGS RAGRGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R  R  SPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC
Sbjct: 61 RALRASSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 98

[Close]

BLAST of CSPI01G13510 vs. NCBI nr
Match: gi|848920510|ref|XP_012857134.1| (PREDICTED: uncharacterized protein LOC105976409 [Erythranthe guttata])

HSP 1 Score: 194.5 bits (493), Expect = 8.7e-47
Identity = 90/98 (91.84%), Postives = 91/98 (92.86%), Query Frame = 1


Query: 1   MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
           MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL  +CSSC RGESGS RAGRGTDWE
Sbjct: 93  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSANCSSCSRGESGSSRAGRGTDWE 152

Query: 61  RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
            L R PSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC
Sbjct: 153 WLLRGPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 190

[Close]

BLAST of CSPI01G13510 vs. NCBI nr
Match: gi|195610700|gb|ACG27180.1| (hypothetical protein [Zea mays])

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRLL +CSSC RGESG PRAGRGTD E
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLLAECSSCSRGESGPPRAGRGTDRE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R PR PSPGVEQ TQNWYGQGESDCLIKTKHCDGP GC
Sbjct: 61 RPPRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPRGC 98

[Close]

BLAST of CSPI01G13510 vs. NCBI nr
Match: gi|253760055|ref|XP_002488965.1| (hypothetical protein SORBIDRAFT_1138s002030 [Sorghum bicolor])

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 84/98 (85.71%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLLVDCSSCFRGESGSPRAGRGTDWE 60
          MEQCRQGKSAK IRN GKRIGSEGWARGS+ RTRRL  DCSSC RGESG PRAGRGTD E
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGTDRE 60

Query: 61 RLPREPSPGVEQSTQNWYGQGESDCLIKTKHCDGPCGC 99
          R  R PSPGVEQ TQNWYGQGESDCLIKTKHCDGP GC
Sbjct: 61 RFLRGPSPGVEQPTQNWYGQGESDCLIKTKHCDGPHGC 98

The following BLAST results are available for this feature:

BLAST of CSPI01G13510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2Q518_GOSRA	8.5e-49	93.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G276600 PE=4 SV=1	[more]
A0A0S3TEK1_PHAAN	1.6e-47	92.86	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG125100 PE=...	[more]
M1BN50_SOLTU	6.1e-47	91.84	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402019042 PE=4 SV=1	[more]
B6SQP7_MAIZE	1.2e-42	86.73	Putative uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
C6JSJ8_SORBI	1.7e-41	85.71	Putative uncharacterized protein Sb1138s002030 OS=Sorghum bicolor GN=Sb1138s0020...	[more]

BLAST of CSPI01G13510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|763744275\|gb\|KJB11774.1\|	1.2e-48	93.88	hypothetical protein B456_001G276600 [Gossypium raimondii]	[more]
gi\|965674227\|dbj\|BAU03535.1\|	2.3e-47	92.86	hypothetical protein VIGAN_UM125100 [Vigna angularis var. angularis]	[more]
gi\|848920510\|ref\|XP_012857134.1\|	8.7e-47	91.84	PREDICTED: uncharacterized protein LOC105976409 [Erythranthe guttata]	[more]
gi\|195610700\|gb\|ACG27180.1\|	1.7e-42	86.73	hypothetical protein [Zea mays]	[more]
gi\|253760055\|ref\|XP_002488965.1\|	2.5e-41	85.71	hypothetical protein SORBIDRAFT_1138s002030 [Sorghum bicolor]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13510.1	CSPI01G13510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33187	FAMILY NOT NAMED	coord: 1..94 score: 2.1
None	No IPR available	PANTHER	PTHR33187:SF1	SUBFAMILY NOT NAMED	coord: 1..94 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13510	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13510	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13510	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13510	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13510	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13510	Silver-seed gourd	carcpiB0477
CSPI01G13510	Silver-seed gourd	carcpiB1105
CSPI01G13510	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13510	Watermelon (97103) v2	cpiwmbB034
CSPI01G13510	Wax gourd	cpiwgoB017
CSPI01G13510	Wax gourd	cpiwgoB049
CSPI01G13510	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13510	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13510	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13510	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13510	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13510	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13510	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13510	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13510	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13510	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13510	Watermelon (97103) v1	cpiwmB007
CSPI01G13510	Watermelon (97103) v1	cpiwmB012