CSPI01G13500 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13500
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Disulfide isomerase domain-containing protein
Location	Chr1 : 8956885 .. 8957427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATATTCTGAGTTGACTGTTCGACGCCTGGGGAAAGCCACCGAGGCAGCCGTTCCCAGTCCGTCCCCCAGCCGGCACGCAGCGACCCGCCCTCCCCACGGAAACAGCTGGAGCAATTCATCCACACGTCCTCCGGATTTTCAAGGGCCACCGGGGGCGCATCGGACACCACGTGATGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGAGGGCAGGCTGTTAA

mRNA sequence

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGCCACCGAGGCAGCCGTTCCCAGTCCGTCCCCCAGCCGGCACGCAGCGACCCGCCCTCCCCACGGAAACAGCTGGAGCAATTCATCCACACGTCCTCCGGATTTTCAAGGGCCACCGGGGGCGCATCGGACACCACGTGATGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGAGGGCAGGCTGTTAA

Coding sequence (CDS)

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGCCACCGAGGCAGCCGTTCCCAGTCCGTCCCCCAGCCGGCACGCAGCGACCCGCCCTCCCCACGGAAACAGCTGGAGCAATTCATCCACACGTCCTCCGGATTTTCAAGGGCCACCGGGGGCGCATCGGACACCACGTGATGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGAGGGCAGGCTGTTAA

Homology

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BLAST of CSPI01G13500 vs. TrEMBL
Match: A0A0A0KWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PGIGRALQRHPFSGLVDSA
Sbjct: 61 PGIGRALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. TrEMBL
Match: A0A0D2ZQ57_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-40
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLI AWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PGIGRALQRHPFSGLVDSA
Sbjct: 61 PGIGRALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. TrEMBL
Match: A0A0D2ZQ21_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.3e-40
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLI AWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PGIGRALQRHPFSGLVDSA
Sbjct: 61 PGIGRALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. TrEMBL
Match: M1DQG0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400042313 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 86/125 (68.80%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAW LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWHLPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAATEAAVPSPSPSRHAATRPPHGNSWSNSSTR---PPDFQGP 120
           PG+GRAL+RHPFSGLVDSA     +  P    H  T      S   +  R   P  F  P
Sbjct: 61  PGVGRALKRHPFSGLVDSAGIVHHLSGPDRYAHTRTLLRRSRSVGGAPLRGIPPISFLTP 120

Query: 121 PGAHR 123
            G  R
Sbjct: 121 YGFTR 125

[Close]

BLAST of CSPI01G13500 vs. TrEMBL
Match: A0A0D2ZWN1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-38
Identity = 83/106 (78.30%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           MCKCRSHGTFPLFGLQSSHLNICYYHQDLHR PLRPGSRPRFCSDRRALLLI AWLLPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRLPLRPGSRPRFCSDRRALLLIEAWLLPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAATEAAVPSPSPSRHAATRPPHGNSWSN 107
           PGIGRALQRHPFSGLVDSA      P+   SR A+       +WS+
Sbjct: 61  PGIGRALQRHPFSGLVDSAVGRRN-PASDSSRIASCAYQKWPTWSS 105

[Close]

BLAST of CSPI01G13500 vs. NCBI nr
Match: gi|700198832|gb|KGN53990.1| (hypothetical protein Csa_4G243140 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PGIGRALQRHPFSGLVDSA
Sbjct: 61 PGIGRALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. NCBI nr
Match: gi|902213626|gb|KNA17311.1| (hypothetical protein SOVF_081120 [Spinacia oleracea])

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-37
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLH+RPLRPGSR RFCSDR ALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRPGSRHRFCSDRCALLLIGAWHLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PGIG ALQRHPFSGLVDSA
Sbjct: 61 PGIGHALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. NCBI nr
Match: gi|253759791|ref|XP_002488947.1| (hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTF LFGLQSSHLNICYYHQDLHRRPLRPGSRP FCS RRALLLIGAW  PR 
Sbjct: 1  MCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSGRRALLLIGAWRSPRW 60

Query: 61 PGIGRALQRHPFSGLVDSA 80
          PG+GRALQRHPFSGLVDSA
Sbjct: 61 PGVGRALQRHPFSGLVDSA 79

[Close]

BLAST of CSPI01G13500 vs. NCBI nr
Match: gi|985468538|ref|XP_015389999.1| (PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34
Identity = 72/95 (75.79%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLH+RPLR GSRP F  DRRALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRSGSRPGFYGDRRALLLIGAWYLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAATEAAVPSPSPSRHAA 96
           GIGRAL+RHPFSGLVDS + +    +  P   A+
Sbjct: 61 SGIGRALKRHPFSGLVDSVSAQLGTVTRLPVHPAS 95

[Close]

BLAST of CSPI01G13500 vs. NCBI nr
Match: gi|590713353|ref|XP_007049619.1| (Uncharacterized protein TCM_002697 [Theobroma cacao])

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-33
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHR+ LRPGSR  F  DR ALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRQSLRPGSRLEFRYDRSALLLIGAWPLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAA 81
          PGIG ALQRHPFSGLVDSA+
Sbjct: 61 PGIGLALQRHPFSGLVDSAS 80

The following BLAST results are available for this feature:

BLAST of CSPI01G13500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWL1_CUCSA	7.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1	[more]
A0A0D2ZQ57_BRAOL	6.3e-40	98.73	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D2ZQ21_BRAOL	6.3e-40	98.73	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M1DQG0_SOLTU	1.6e-38	68.80	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400042313 PE=4 SV=1	[more]
A0A0D2ZWN1_BRAOL	1.6e-38	78.30	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CSPI01G13500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198832\|gb\|KGN53990.1\|	1.1e-40	100.00	hypothetical protein Csa_4G243140 [Cucumis sativus]	[more]
gi\|902213626\|gb\|KNA17311.1\|	7.2e-37	93.67	hypothetical protein SOVF_081120 [Spinacia oleracea]	[more]
gi\|253759791\|ref\|XP_002488947.1\|	1.8e-35	91.14	hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor]	[more]
gi\|985468538\|ref\|XP_015389999.1\|	2.6e-34	75.79	PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis]	[more]
gi\|590713353\|ref\|XP_007049619.1\|	2.8e-33	87.50	Uncharacterized protein TCM_002697 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13500.1	CSPI01G13500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37395	FAMILY NOT NAMED	coord: 1..79 score: 2.7
None	No IPR available	PANTHER	PTHR37395:SF2	SUBFAMILY NOT NAMED	coord: 1..79 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13500	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13500	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13500	Silver-seed gourd	carcpiB0477
CSPI01G13500	Silver-seed gourd	carcpiB1105
CSPI01G13500	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13500	Watermelon (97103) v2	cpiwmbB034
CSPI01G13500	Wax gourd	cpiwgoB017
CSPI01G13500	Wax gourd	cpiwgoB049
CSPI01G13500	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13500	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13500	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13500	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13500	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13500	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13500	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13500	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13500	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13500	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13500	Watermelon (97103) v1	cpiwmB007
CSPI01G13500	Watermelon (97103) v1	cpiwmB012
CSPI01G13500	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13500	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13500	Bottle gourd (USVL1VR-Ls)	cpilsiB046