CSPI01G13490 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13490
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSenescence-associated protein
LocationChr1 : 8954796 .. 8955494 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGAAGTCGAGGTCGAGACGCGTCACCGAGGTTGGATCTACCACCGTAGTGTCGCGACGACGAGCGTCGAGGACTCGATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGACTGTTCGACGCCCGGGGAAGGCTCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGAGGCACTCGATCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA

mRNA sequence

ATGGAGGCGAAGTCGAGGTCGAGACGCGTCACCGAGGTTGGATCTACCACCGTAGTGTCGCGACGACGAGCTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGACTGTTCGACGCCCGGGGAAGGCTCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGAGGCACTCGATCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA

Coding sequence (CDS)

ATGGAGGCGAAGTCGAGGTCGAGACGCGTCACCGAGGTTGGATCTACCACCGTAGTGTCGCGACGACGAGCTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGACTGTTCGACGCCCGGGGAAGGCTCCCGAGGGAGCCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACCAACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGAGGCACTCGATCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA
Homology
[Close]
BLAST of CSPI01G13490 vs. TrEMBL
Match: M1BN49_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401019042 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.0e-73
Identity = 142/149 (95.30%), Postives = 143/149 (95.97%), Query Frame = 1 

Query: 25  RIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPS 84
           RIPLVRTSSEL VRRPGKAPEG VPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPS
Sbjct: 24  RIPLVRTSSELAVRRPGKAPEGTVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPS 83

Query: 85  PQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTGH 144
           PQSQSFSR YGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGR RHS+LRIFKGRR RTGH
Sbjct: 84  PQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRERTGH 143

Query: 145 HATCGALPATGPYLRLSRFQGGQAVKQKR 174
           HATCGALPA GPYLRLSRFQGGQAVKQKR
Sbjct: 144 HATCGALPAAGPYLRLSRFQGGQAVKQKR 172

[Close]
BLAST of CSPI01G13490 vs. TrEMBL
Match: C1NAN1_MICPC (Predicted protein (Fragment) OS=Micromonas pusilla (strain CCMP1545) GN=MICPUCDRAFT_23892 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.6e-72
Identity = 140/150 (93.33%), Postives = 142/150 (94.67%), Query Frame = 1 

Query: 24  ARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVP 83
           +RIPLVRTSSELTVRRPGK PE  VPSPSPGRHAA RSRRGSSSSS PTADGFGTGTP P
Sbjct: 3   SRIPLVRTSSELTVRRPGKVPERTVPSPSPGRHAANRSRRGSSSSSSPTADGFGTGTPEP 62

Query: 84  SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTG 143
           SPQSQSFSR YGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHS+LRIFKGRRGRTG
Sbjct: 63  SPQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRRGRTG 122

Query: 144 HHATCGALPATGPYLRLSRFQGGQAVKQKR 174
           HHATCGALPA GPYLRLSRFQGGQAVKQKR
Sbjct: 123 HHATCGALPAAGPYLRLSRFQGGQAVKQKR 152

[Close]
BLAST of CSPI01G13490 vs. TrEMBL
Match: A0A0D2ZQ58_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68
Identity = 137/154 (88.96%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 20  SRRRARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTG 79
           SR+  RIPLVRTSSEL VRRPGKAPE AVPSPSPGRH A RSR  S SSSPPT DGFGTG
Sbjct: 190 SRQGHRIPLVRTSSELAVRRPGKAPERAVPSPSPGRHEAVRSRHVSGSSSPPTVDGFGTG 249

Query: 80  TPVPSPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRR 139
           TP PSPQSQSFSR YGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHS+LRIFKGRR
Sbjct: 250 TPEPSPQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRR 309

Query: 140 GRTGHHATCGALPATGPYLRLSRFQGGQAVKQKR 174
             TGHHATCGALPA GPYLRLSRFQGGQAVKQKR
Sbjct: 310 ECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR 343

[Close]
BLAST of CSPI01G13490 vs. TrEMBL
Match: A0A0D2ZQ22_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.9e-68
Identity = 135/149 (90.60%), Postives = 136/149 (91.28%), Query Frame = 1 

Query: 25  RIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPS 84
           RIPLVRTSSEL VRRPGKAPE AVPSPSPGRH A RSR  S SSSPPT DGFGTGTP PS
Sbjct: 104 RIPLVRTSSELAVRRPGKAPERAVPSPSPGRHEAVRSRHVSGSSSPPTVDGFGTGTPEPS 163

Query: 85  PQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTGH 144
           PQSQSFSR YGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHS+LRIFKGRR  TGH
Sbjct: 164 PQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRRECTGH 223

Query: 145 HATCGALPATGPYLRLSRFQGGQAVKQKR 174
           HATCGALPA GPYLRLSRFQGGQAVKQKR
Sbjct: 224 HATCGALPAAGPYLRLSRFQGGQAVKQKR 252

[Close]
BLAST of CSPI01G13490 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-66
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 1 

Query: 33    SELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSR 92
             SELTVRRPGK PEG VP+PSP RHA TRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSR
Sbjct: 13322 SELTVRRPGKRPEGPVPNPSPDRHATTRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSR 13381

Query: 93    GYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTGHHATCGALP 152
             GYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGR RHS+LRIFKGRRGRTGHHATCGALP
Sbjct: 13382 GYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALP 13441

Query: 153   ATGPYLRLSRFQGGQAV 170
             A GPYLRLSRFQGGQA+
Sbjct: 13442 AAGPYLRLSRFQGGQAI 13458

[Close]
BLAST of CSPI01G13490 vs. NCBI nr
Match: gi|303291416|ref|XP_003064993.1| (predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 278.5 bits (711), Expect = 8.1e-72
Identity = 140/150 (93.33%), Postives = 142/150 (94.67%), Query Frame = 1 

Query: 24  ARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVP 83
           +RIPLVRTSSELTVRRPGK PE  VPSPSPGRHAA RSRRGSSSSS PTADGFGTGTP P
Sbjct: 3   SRIPLVRTSSELTVRRPGKVPERTVPSPSPGRHAANRSRRGSSSSSSPTADGFGTGTPEP 62

Query: 84  SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTG 143
           SPQSQSFSR YGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHS+LRIFKGRRGRTG
Sbjct: 63  SPQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRRGRTG 122

Query: 144 HHATCGALPATGPYLRLSRFQGGQAVKQKR 174
           HHATCGALPA GPYLRLSRFQGGQAVKQKR
Sbjct: 123 HHATCGALPAAGPYLRLSRFQGGQAVKQKR 152

[Close]
BLAST of CSPI01G13490 vs. NCBI nr
Match: gi|702283699|ref|XP_010046011.1| (PREDICTED: uncharacterized protein LOC104434852 [Eucalyptus grandis])

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 132/150 (88.00%), Postives = 138/150 (92.00%), Query Frame = 1 

Query: 24  ARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVP 83
           +RIPLVRTSSELTVRRP KA EGAVP+PSPGRHAATRSRR SSSSSPPTADGFG  TPVP
Sbjct: 107 SRIPLVRTSSELTVRRPRKALEGAVPNPSPGRHAATRSRRESSSSSPPTADGFGIRTPVP 166

Query: 84  SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTG 143
           SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGR RHS+L+IFKGRRGRTG
Sbjct: 167 SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLQIFKGRRGRTG 226

Query: 144 HHATCGALPATGPYLRLSRFQGGQAVKQKR 174
           HHATCGALPA GPYLRLSRFQG   + Q +
Sbjct: 227 HHATCGALPAAGPYLRLSRFQGACYIPQSQ 256

[Close]
BLAST of CSPI01G13490 vs. NCBI nr
Match: gi|947068970|gb|KRH17861.1| (hypothetical protein GLYMA_13G022600 [Glycine max])

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-63
Identity = 123/134 (91.79%), Postives = 126/134 (94.03%), Query Frame = 1 

Query: 39  RPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSRGYGSIL 98
           +P   PEG VP+PSP RHA TRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSRGYGSIL
Sbjct: 90  KPTLGPEGPVPNPSPDRHATTRSRRGSSSSSPPTADGFGTGTPVPSPQSQSFSRGYGSIL 149

Query: 99  PTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTGHHATCGALPATGPYL 158
           PTSLAYIVPSTRGCSPWRPDAVMSTTGR RHS+LRIFKGRRGRTGHHATCGALPA GPYL
Sbjct: 150 PTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYL 209

Query: 159 RLSRFQGGQAVKQK 173
           RLSRFQGGQAVKQK
Sbjct: 210 RLSRFQGGQAVKQK 223

[Close]
BLAST of CSPI01G13490 vs. NCBI nr
Match: gi|848920526|ref|XP_012857141.1| (PREDICTED: uncharacterized protein LOC105976418 [Erythranthe guttata])

HSP 1 Score: 248.4 bits (633), Expect = 8.9e-63
Identity = 129/146 (88.36%), Postives = 132/146 (90.41%), Query Frame = 1 

Query: 24  ARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTPVP 83
           +RIPLVRTSSE TVRRPGKAPEGA+ SPSPGRHA TRSRR SSSSS PTADG GT TPVP
Sbjct: 3   SRIPLVRTSSESTVRRPGKAPEGAIRSPSPGRHATTRSRRRSSSSSSPTADGSGTRTPVP 62

Query: 84  SPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGRTG 143
           SP SQSFSR YGSILPTSLAYI PSTRGCSPWRPDAVMSTTGR RHS+LRIFKGRRG TG
Sbjct: 63  SPHSQSFSRDYGSILPTSLAYI-PSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGHTG 122

Query: 144 HHATCGALPATGPYLRLSRFQGGQAV 170
           HHATCGALPA GPYL LSRFQGGQAV
Sbjct: 123 HHATCGALPAAGPYLWLSRFQGGQAV 147

[Close]
BLAST of CSPI01G13490 vs. NCBI nr
Match: gi|870844845|gb|KMS97716.1| (hypothetical protein BVRB_5g124600 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.4 bits (620), Expect = 2.9e-61
Identity = 127/152 (83.55%), Postives = 133/152 (87.50%), Query Frame = 1 

Query: 22  RRARIPLVRTSSELTVRRPGKAPEGAVPSPSPGRHAATRSRRGSSSSSPPTADGFGTGTP 81
           R  +IPLVRT+SEL VR PGK PEGA PSPSPGR A TRSRR SSS   PTADG GTGTP
Sbjct: 8   RNNQIPLVRTNSELVVRPPGKDPEGAGPSPSPGRPATTRSRRASSS---PTADGLGTGTP 67

Query: 82  VPSPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSILRIFKGRRGR 141
           VP+PQSQSFSR YGSIL TSLAYI+PSTRGCSPWR DAVMSTTGR RHS+LRIFKGR GR
Sbjct: 68  VPNPQSQSFSRSYGSILLTSLAYIIPSTRGCSPWRSDAVMSTTGRGRHSVLRIFKGRWGR 127

Query: 142 TGHHATCGALPATGPYLRLSRFQGGQAVKQKR 174
           TGHHATCGALPA GPYLRLSRF+GGQAVKQKR
Sbjct: 128 TGHHATCGALPAFGPYLRLSRFKGGQAVKQKR 156

The following BLAST results are available for this feature:
BLAST of CSPI01G13490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13490 vs. TrEMBL
Match NameE-valueIdentityDescription
M1BN49_SOLTU3.0e-7395.30Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401019042 PE=4 SV=1[more]
C1NAN1_MICPC5.6e-7293.33Predicted protein (Fragment) OS=Micromonas pusilla (strain CCMP1545) GN=MICPUCDR... [more]
A0A0D2ZQ58_BRAOL1.7e-6888.96Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0D2ZQ22_BRAOL2.9e-6890.60Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
I1LXS9_SOYBN1.6e-6693.43Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of CSPI01G13490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|303291416|ref|XP_003064993.1|8.1e-7293.33predicted protein, partial [Micromonas pusilla CCMP1545][more]
gi|702283699|ref|XP_010046011.1|3.9e-6688.00PREDICTED: uncharacterized protein LOC104434852 [Eucalyptus grandis][more]
gi|947068970|gb|KRH17861.1|4.0e-6391.79hypothetical protein GLYMA_13G022600 [Glycine max][more]
gi|848920526|ref|XP_012857141.1|8.9e-6388.36PREDICTED: uncharacterized protein LOC105976418 [Erythranthe guttata][more]
gi|870844845|gb|KMS97716.1|2.9e-6183.55hypothetical protein BVRB_5g124600 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13490.1CSPI01G13490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047FAMILY NOT NAMEDcoord: 25..173
score: 7.3