CSPI01G13480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDisulfide isomerase domain-containing protein
LocationChr1 : 8953633 .. 8954641 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGATCTAGGTTAGCGCACAGTTAGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCGCGGCTCAACAAAGCAGCCACGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCCCGCGGGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTACGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCAAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCATAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACGGGCGTAACAAAGGCCTGGGCGTAG

mRNA sequence

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTACGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCAAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCATAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACGGGCGTAACAAAGGCCTGGGCGTAG

Coding sequence (CDS)

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCACGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTACGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCAAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCATAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACGGGCGTAACAAAGGCCTGGGCGTAG
Homology
[Close]
BLAST of CSPI01G13480 vs. TrEMBL
Match: A0A0D2ZUF1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-61
Identity = 128/192 (66.67%), Postives = 143/192 (74.48%), Query Frame = 1 

Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRP  R RFCSDRRALLLI AW+LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPSLRLRFCSDRRALLLIEAWILPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAVSLRASTRVSSGFAP-LRHSSPSFGSRQACS----HSNPSQ 120
           PGIGRALQRHPFSGLVDSA   R + +   G  P    +SP  G     S    H++   
Sbjct: 61  PGIGRALQRHPFSGLVDSA-DERFARQYRCGPPPEFPLASPRSGIVHHLSGPDRHAHTRT 120

Query: 121 KIKVGR--WCNPLGDPTSQLPCALRVYSPVNSHTCQTPWSVFQDGSNGEPKGRCQERADA 180
            ++  R   C P+ DP +QLP ALRVYSPV+SHTCQ+PWSVFQDGSNGEP GRC + A+ 
Sbjct: 121 LLRRSRSVGCAPVRDPANQLPYALRVYSPVDSHTCQSPWSVFQDGSNGEPTGRCPKHANV 180

Query: 181 EARHKARAASHD 186
           E R +ARAA HD
Sbjct: 181 EERREARAADHD 191

[Close]
BLAST of CSPI01G13480 vs. TrEMBL
Match: M4FJ68_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.5e-55
Identity = 117/176 (66.48%), Postives = 128/176 (72.73%), Query Frame = 1 

Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           M KCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPG RPRFCSDRR LLLI AWLLPRR
Sbjct: 1   MWKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGLRPRFCSDRRTLLLIKAWLLPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAVSLRASTRVSSGFAP-LRHSSPSFGSRQACS----HSNPSQ 120
           P I  ALQRHP  GLVDSA   R + +   G  P    +SP  G     S    H++   
Sbjct: 61  PDIVHALQRHPVLGLVDSA-DERFARQYRCGPPPEFPLASPRSGIVHHLSGPDRHAHTRT 120

Query: 121 KIKVGR--WCNPLGDPTSQLPCALRVYSPVNSHTCQTPWSVFQDGSNGEPKGRCQE 170
            ++  R   C P+ DP +QLPCALRVYSPV+SHTCQTPWSVF+DGSNGEP GRC E
Sbjct: 121 LLRRSRSVGCAPVRDPANQLPCALRVYSPVDSHTCQTPWSVFKDGSNGEPTGRCPE 175

[Close]
BLAST of CSPI01G13480 vs. TrEMBL
Match: A0A0R0GH91_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 102/148 (68.92%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGIGRALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLRPGSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCA 136
              VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKI+VGR CNP GDPT+QLPCA
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEPK 165
           LRV  P+     +     F+ G  G P+
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSPQ 368

[Close]
BLAST of CSPI01G13480 vs. TrEMBL
Match: M1DZ24_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-41
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 1 

Query: 78  SAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCAL 137
           ++VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKIKVGR C P GDPT+QLP AL
Sbjct: 17  TSVSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIKVGRRCTPQGDPTNQLPYAL 76

Query: 138 RVYSPVNSHTCQTPWSVFQDGSNGEPKGRCQERADAEARHK 179
           RVYSPV+SHTCQTPWSVFQDGSNGEP G+  ERADAEAR +
Sbjct: 77  RVYSPVDSHTCQTPWSVFQDGSNGEPTGQRPERADAEARQR 117

[Close]
BLAST of CSPI01G13480 vs. TrEMBL
Match: A0A0A0KWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-41
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIGRALQRHPFSGLVDSA  L
Sbjct: 61 PGIGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of CSPI01G13480 vs. NCBI nr
Match: gi|947068886|gb|KRH17777.1| (hypothetical protein GLYMA_13G015000, partial [Glycine max])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 102/148 (68.92%), Postives = 109/148 (73.65%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGIGRALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLRPGSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCA 136
              VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKI+VGR CNP GDPT+QLPCA
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEPK 165
           LRV  P+     +     F+ G  G P+
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSPQ 368

[Close]
BLAST of CSPI01G13480 vs. NCBI nr
Match: gi|700198832|gb|KGN53990.1| (hypothetical protein Csa_4G243140 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 8.5e-41
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIGRALQRHPFSGLVDSA  L
Sbjct: 61 PGIGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of CSPI01G13480 vs. NCBI nr
Match: gi|902213626|gb|KNA17311.1| (hypothetical protein SOVF_081120 [Spinacia oleracea])

HSP 1 Score: 162.9 bits (411), Expect = 5.7e-37
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLH+RPLRPGSR RFCSDR ALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRPGSRHRFCSDRCALLLIGAWHLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIG ALQRHPFSGLVDSA  L
Sbjct: 61 PGIGHALQRHPFSGLVDSAGEL 82

[Close]
BLAST of CSPI01G13480 vs. NCBI nr
Match: gi|253759791|ref|XP_002488947.1| (hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTF LFGLQSSHLNICYYHQDLHRRPLRPGSRP FCS RRALLLIGAW  PR 
Sbjct: 1  MCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSGRRALLLIGAWRSPRW 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PG+GRALQRHPFSGLVDSA  L
Sbjct: 61 PGVGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of CSPI01G13480 vs. NCBI nr
Match: gi|985468538|ref|XP_015389999.1| (PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis])

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 76/101 (75.25%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           MCKCRSHGTFPLFGLQSSHLNICYYHQDLH+RPLR GSRP F  DRRALLLIGAW LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRSGSRPGFYGDRRALLLIGAWYLPRR 60

Query: 61  PGIGRALQRHPFSGLVDS-AVSLRASTRVSSGFAPLRHSSP 101
            GIGRAL+RHPFSGLVDS +  L   TR+     P+  +SP
Sbjct: 61  SGIGRALKRHPFSGLVDSVSAQLGTVTRL-----PVHPASP 96

The following BLAST results are available for this feature:
BLAST of CSPI01G13480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2ZUF1_BRAOL1.8e-6166.67Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4FJ68_BRARP5.5e-5566.48Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0R0GH91_SOYBN2.2e-4868.92Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1[more]
M1DZ24_SOLTU5.9e-4185.15Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1[more]
A0A0A0KWL1_CUCSA5.9e-4197.56Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1[more]
BLAST of CSPI01G13480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|947068886|gb|KRH17777.1|3.2e-4868.92hypothetical protein GLYMA_13G015000, partial [Glycine max][more]
gi|700198832|gb|KGN53990.1|8.5e-4197.56hypothetical protein Csa_4G243140 [Cucumis sativus][more]
gi|902213626|gb|KNA17311.1|5.7e-3791.46hypothetical protein SOVF_081120 [Spinacia oleracea][more]
gi|253759791|ref|XP_002488947.1|1.4e-3589.02hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor][more]
gi|985468538|ref|XP_015389999.1|3.4e-3475.25PREDICTED: uncharacterized protein LOC107178872 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13480.1CSPI01G13480.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37395FAMILY NOT NAMEDcoord: 1..82
score: 8.4
NoneNo IPR availablePANTHERPTHR37395:SF2SUBFAMILY NOT NAMEDcoord: 1..82
score: 8.4