CSPI01G13460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Rrna intron-encoded homing endonuclease
Location	Chr1 : 8951927 .. 8952416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Homology

[Close]

BLAST of CSPI01G13460 vs. TrEMBL
Match: A0A0R0GQW8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G012700 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-45
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRR RFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]

BLAST of CSPI01G13460 vs. TrEMBL
Match: A0A072TUX5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0120 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-42
Identity = 87/92 (94.57%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAACDVAR 93
          CTHRPSLLPIEWSGEVFG RRRGRFAA DV R
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVR 92

[Close]

BLAST of CSPI01G13460 vs. TrEMBL
Match: A0A0A0LPG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.6e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGR 85
          CTHRPSLLPIEWSGEVFGSRRRGR
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGR 84

[Close]

BLAST of CSPI01G13460 vs. TrEMBL
Match: A5BKB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001840 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-40
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSY +IIAIVGLQRGIPSKR S ARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVKIIAIVGLQRGIPSKRXSLARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAACDV 91
          CTHRPSLLPIEWSGEVFGSRRRGR AA DV
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGRSAARDV 90

[Close]

BLAST of CSPI01G13460 vs. TrEMBL
Match: A0A0R0GH50_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G012500 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.0e-38
Identity = 85/103 (82.52%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE-------------IIAIVGLQRGIPSK 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SY E             IIAIVGLQRGIPSK
Sbjct: 240 MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVTLHGQLLRGTMAIIAIVGLQRGIPSK 299

Query: 61  RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAACDV 91
           RESSARVDYVPALCTHRPSLLPIEWSGEVFG RRR RFAA DV
Sbjct: 300 RESSARVDYVPALCTHRPSLLPIEWSGEVFGLRRRERFAARDV 342

[Close]

BLAST of CSPI01G13460 vs. NCBI nr
Match: gi|947068861|gb|KRH17752.1| (hypothetical protein GLYMA_13G012700 [Glycine max])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRR RFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]

BLAST of CSPI01G13460 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-45
Identity = 97/112 (86.61%), Postives = 97/112 (86.61%), Query Frame = 1


Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE-------------IIAIVGLQRGIPSK 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE             IIAIVGLQRGIPSK
Sbjct: 679 MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVILRGQLLRGTMAIIAIVGLQRGIPSK 738

Query: 61  RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRG FAA DVARSPLNLII
Sbjct: 739 RESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGWFAARDVARSPLNLII 790

[Close]

BLAST of CSPI01G13460 vs. NCBI nr
Match: gi|922327855|ref|XP_013443320.1| (hypothetical protein MTR_0021s0120 [Medicago truncatula])

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-42
Identity = 87/92 (94.57%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAACDVAR 93
          CTHRPSLLPIEWSGEVFG RRRGRFAA DV R
Sbjct: 61 CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVR 92

[Close]

BLAST of CSPI01G13460 vs. NCBI nr
Match: gi|700206742|gb|KGN61861.1| (hypothetical protein Csa_2G252100 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 9.4e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGR 85
          CTHRPSLLPIEWSGEVFGSRRRGR
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGR 84

[Close]

BLAST of CSPI01G13460 vs. NCBI nr
Match: gi|147791048|emb|CAN65763.1| (hypothetical protein VITISV_001840 [Vitis vinifera])

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-40
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSY +IIAIVGLQRGIPSKR S ARVDYVPAL
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVKIIAIVGLQRGIPSKRXSLARVDYVPAL 60

Query: 61 CTHRPSLLPIEWSGEVFGSRRRGRFAACDV 91
          CTHRPSLLPIEWSGEVFGSRRRGR AA DV
Sbjct: 61 CTHRPSLLPIEWSGEVFGSRRRGRSAARDV 90

The following BLAST results are available for this feature:

BLAST of CSPI01G13460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0R0GQW8_SOYBN	1.2e-45	93.94	Uncharacterized protein OS=Glycine max GN=GLYMA_13G012700 PE=4 SV=1	[more]
A0A072TUX5_MEDTR	2.0e-42	94.57	Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0120 PE=4 SV=1	[more]
A0A0A0LPG1_CUCSA	6.6e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1	[more]
A5BKB8_VITVI	2.5e-40	93.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001840 PE=4 SV=1	[more]
A0A0R0GH50_SOYBN	4.0e-38	82.52	Uncharacterized protein OS=Glycine max GN=GLYMA_13G012500 PE=4 SV=1	[more]

BLAST of CSPI01G13460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|947068861\|gb\|KRH17752.1\|	1.7e-45	93.94	hypothetical protein GLYMA_13G012700 [Glycine max]	[more]
gi\|694380941\|ref\|XP_009366572.1\|	6.3e-45	86.61	PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri]	[more]
gi\|922327855\|ref\|XP_013443320.1\|	2.9e-42	94.57	hypothetical protein MTR_0021s0120 [Medicago truncatula]	[more]
gi\|700206742\|gb\|KGN61861.1\|	9.4e-41	100.00	hypothetical protein Csa_2G252100 [Cucumis sativus]	[more]
gi\|147791048\|emb\|CAN65763.1\|	3.6e-40	93.33	hypothetical protein VITISV_001840 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13460.1	CSPI01G13460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13460	Silver-seed gourd	carcpiB0477
CSPI01G13460	Silver-seed gourd	carcpiB1105
CSPI01G13460	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13460	Watermelon (97103) v2	cpiwmbB034
CSPI01G13460	Wax gourd	cpiwgoB017
CSPI01G13460	Wax gourd	cpiwgoB049
CSPI01G13460	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13460	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13460	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13460	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13460	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13460	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13460	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13460	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13460	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13460	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13460	Watermelon (97103) v1	cpiwmB007
CSPI01G13460	Watermelon (97103) v1	cpiwmB012
CSPI01G13460	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13460	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13460	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13460	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13460	Cucumber (Gy14) v2	cgybcpiB001