CSPI01G13440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 8946545 .. 8950689 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTGGCAGGATCAACCAGGTAGCATTCCTACAGGACGTCGCAGCCCCGCATGCGTGCCGACACCGCACGGCGTGGGAGCAACGCAGGGAGCGAGCGTCATTCGTTCGAGCAAGGGACAAAGGCAACACGTTCGAGGGGCTCCTCGACCATATCATGCCACCGAATGCACTGCGTCCGAGAGATCGAGCGCCGACGACGTGGGCCGCCATGACGCACTAAGGCGCCAAGGCAGAACGCGCGCGCGGGCTGTGGGATTCTTCGTGCACCCGCGCGCGGGTGACGACAGAAAGGGGCTGACGGGACACGACGCTTCCATCGCGCTTGGTAACGATGCAAGAACCGATCGATTGCGGCCGCTCCAACGAAGGACTTCGTTCGGGGCACATCGACGAGGAGGAGCAGGCGCCGACAGTTCGATGCCCGAGCAACGACCCTGCCAACCCAAACTACCGAATCACCGCTCACGCGCCGTACGCATGCGAGCCCATGCATCGCTCGGCCGTCCAGCGTCCAACACCGTGTATCAAAGCAAGTGGAGTCGCGACATCGCCGTGCACGATGACGAGAACACATGATGTCTTGCGCGCGCGCTCAAAATGATCGCTCTCTTGTTCATTCTTCAACCCACGTTCGTTTAGCCATCATGCAACCAAAAAATCATCGTGCGCAGCGGGACGAGCCCTTCCGCCAAGCAGGGACCGATCGCAAGGTCATCTCGTATCCTCAAGGACAAGCAAGCCCACAACAGAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCACATCAACTCGACTTCCCGCTCTCGCTCCCCACCCGACGTTGGGGGAAAAACCGACATTCCGACCAAGCCCTTCCATCAAGCAAGTAGCAATCACAAGACCATCTCGTATCCTCCAGAACAAGCGAGCCCAAACGACGCCCACAACAGAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCACATCAACTCGACTTCCCGCTCTCACTCCCCACCCGAAGTAGGGGCCCAGCATTCCGACTAAAGCAACATTCGTCAAACAAGAAGCAATCGCAAGTCATCTCGTATCCTCAAGAACAAGCAAGCCCGAACGACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCACATCAACTCGACTTCCCGCTCTCACTCCCCACCCGACGTTGCGGGATAAACCGACAATCCGGCCAAACCCTTCCATCAAGCAAGAAGCAACCATAAGACCATCTCGTATCCTCGAGAACAAGCGAGCCCAAACGACACCCACAACAAAGTGCAGGCATCATCAAAGCAAGCCCGTCCAAGCACATCAACTCGACATCCCGCTCTCACTCCCCACCCGAAGTAGGGGCCCAGCATTCCGACTAAAGCAACATCCGTCAAGCAAGAAGCAATCGAAAGACATCTCGTATCCTCGAGAACAAGCGAGCCCAAACGACGCCCACAACAGAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCACATCAACTCGACTTCCCGCTCTCGCTCCCCACTCGACGTTGTGGGATAAACCGACATTCCGACCAAACCCTTCCATCAAGCATAAGGTCCAACTACGAGCTCTTTAACTGCAACAACTTAAATATACACTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCGGAGCCCGTGTCGACCTTTTATCTAATAAAGGCGTGCCTTGCAGAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCAAACCCGTGTCGACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAGTCTTTGAGACAAGCATATGTCTACTGACAGGATCAACTAGGTAGCTTTCGTACACGACGTCGCAGCCCCGCATGCGTGCCGACACCGCACGGCGTGGGAGCAACGCAGGGAGCGAGCGATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGGTACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACAAAATAGGATCGAAATCCTATGACGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGACGAGCCGACCGGTGCTCACCATAGGCGGACCGATCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATTGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGTGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTACAGGACGTCGCAGCCCCGCATGCGTGCCGACACCGCACGGCGTGGGAGCAACGCAGGGAGCGAGCGTCATTCGTTCGAGCAAGGGACAAAGGCAACACGTTCGAGGGGCTCCCCGACCATATCATGCAGCCGAATGCACTGCATCCGAGAGACCGAGCGCCGACGACGCGGGCCGCCACGACGCACCAAGGCGCCAAGGCAGAACGCGCGCGCGGGCTGTGGGGTTCGTCGTGCACCCGCGCGCGGGTGACGACAGAAAGGGGCTGA

mRNA sequence

ATGACTACTGGCAGGATCAACCAGGTAGCATTCCTACAGGACGTCGCAGCCCCGCATGCGTGCCGACACCGCACGGCGTGGGAGCAACGCAGGGAGCGAGCGTCATTCGTTCGAGCAAGGGACAAAGGCAACACGTTCGAGGGGCTCCCCGACCATATCATGCAGCCGAATGCACTGCATCCGAGAGACCGAGCGCCGACGACGCGGGCCGCCACGACGCACCAAGGCGCCAAGGCAGAACGCGCGCGCGGGCTGTGGGGTTCGTCGTGCACCCGCGCGCGGGTGACGACAGAAAGGGGCTGA

Coding sequence (CDS)

ATGACTACTGGCAGGATCAACCAGGTAGCATTCCTACAGGACGTCGCAGCCCCGCATGCGTGCCGACACCGCACGGCGTGGGAGCAACGCAGGGAGCGAGCGTCATTCGTTCGAGCAAGGGACAAAGGCAACACGTTCGAGGGGCTCCCCGACCATATCATGCAGCCGAATGCACTGCATCCGAGAGACCGAGCGCCGACGACGCGGGCCGCCACGACGCACCAAGGCGCCAAGGCAGAACGCGCGCGCGGGCTGTGGGGTTCGTCGTGCACCCGCGCGCGGGTGACGACAGAAAGGGGCTGA

Homology

[Close]

BLAST of CSPI01G13440 vs. NCBI nr
Match: gi|1004041344|ref|WP_061496623.1| (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MTTGRINQVAFLQDVAAPHACRHRTAWEQRRERASFVRARDKGNTFEGLPDHIMQPNALH 60
           MTTGRINQVAFLQDVAAPHACRHRTAW+QRRERASFVRARDKGNTFEGLPDHIMQPNALH
Sbjct: 1   MTTGRINQVAFLQDVAAPHACRHRTAWDQRRERASFVRARDKGNTFEGLPDHIMQPNALH 60

Query: 61  PRDRAPTTRAATTHQGAKAERARGLWGSSCTRARVTTERG 101
           PRDRAPTTRAATTHQGAKAERARGLWGSSCTRARVTTERG
Sbjct: 61  PRDRAPTTRAATTHQGAKAERARGLWGSSCTRARVTTERG 100

The following BLAST results are available for this feature:

BLAST of CSPI01G13440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13440 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI01G13440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1004041344\|ref\|WP_061496623.1\|	3.0e-50	99.00	hypothetical protein [Legionella pneumophila]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13440.1	CSPI01G13440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13440	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G13440	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G13440	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13440	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13440	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13440	Silver-seed gourd	carcpiB0477
CSPI01G13440	Silver-seed gourd	carcpiB1105
CSPI01G13440	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13440	Watermelon (97103) v2	cpiwmbB034
CSPI01G13440	Wax gourd	cpiwgoB017
CSPI01G13440	Wax gourd	cpiwgoB049
CSPI01G13440	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13440	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13440	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13440	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13440	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13440	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13440	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13440	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13440	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13440	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13440	Watermelon (97103) v1	cpiwmB007
CSPI01G13440	Watermelon (97103) v1	cpiwmB012