CSPI01G13260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 8734055 .. 8737038 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTAACATGTTGCAGCCTCAACTTCCTCGTTTTGAGGGAAAAAACTATATGCGGTGGAGCCAGCAAATGAAAGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACAACGGATATTCAAAGCCAGAAAGTGAGAATGATCTTTTAGCACAACGACTCAATGAGTTGAGAGATGCTAGAAAAAAGAATAAGAAGGCATTATTTTTCATCTACCAAGCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAATGTGAAGAAAATGCAAAATTGGTCCGATTACAAACACTTCGAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTGAAGAAATTTTCAACTGTGTTCTCTTATTGTTAATCAATTGAGATCAAATGGAGAAACAATTGAAGATCAAAGGATTGTTGAGAAGATTCTTAGAAGCATGACTAGAAGATATGGGCATATTGTTGTAGCAATTGAAGAATCCAAAGATTTGTCAACTCTCTCTATAAATAGTTTAATGGGATCTCTTCATTCTCATGAGCTCTGATTGAAGATGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAGTCCTCCTATTGAGGTCGATCCAATGGAAGAAGATGTGGACGTGGTGGCAGTGGCAATGGACGATCCAACGTTGTAACAAATACAAAGTCAAAAAGCAGAGACAATCAATCCTTTTCAAATAGAGGACGGGGAAGAAGTTCAAATAGAGGAAGTGGTAGAAGTAGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGACTAATTCTAATCAAGCAGAAACCACACTAATGCATGAGCAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAAGAATCAAGCACTGAAGAAATATGGTATCTTGATAGTGGTTGTAGTAATCACATGACAAGAAGAAAGGATATTTTTATATCTGTAGATGAATCTCATCAAAATGTAGTGAAGATTGGTGACAACAAGAAGCTTGAAGTCAAATGAAAATGAGATATTCTTATCAAGAAAAAAAAGGGGAACAAAAAGAATTACTGATGTGTATTATGTTTCAGGTCTCAAACACAATCTTTTAAGTGTTGGACAACTTCTCCTAAGAGGACATGAGGTTATCTTTAAAGATAACCTCATGTCCTCTTAGGAGAAGTTGTCCAACACTTAAAAGATTGTGTTTGAGACCTGAAACATAATACACATCAGTAATTCTTTTTGTTCCCCTTTTTTTTCTTGATAAGAATATCTCATTTTCCTTTGACTTCAAGCATCTTGTTGTCACCAGTCTTCACTACATTTTGATGAGATTCATCTAAAGATATAAAAATATCCTTTCTTCCTGTCATGTGGTTACTACAACCACTATCAAGATACCATATTTCTTCAGTGCTTGATTTTTGAGCTTGTTCATACAGACTTATGTGGACCTATGAGAACTACTACGCATGGAGGTAACTGTTATTTTCTCACATTTATTGATGACTAGAGTCGAAAAACATGGATTTATCTACTAAAAGAAAAGAGTGCTACTTTCGAATGTTTCAAGACATTCAAAGCAATGGTGGAAAATGAAAGTAACTTGAAATTGAAATCATTATGTTCGGATCGTGGAGGAGAATATATTGTTTTTGCAGATTTCTTGAAGGAAAATGGAATCAAGCATCAGAAGACTGTTCGAAGAACTCCTCAACAAAACGGAGTTGCAGAGAGGAAAAATAGAATAATAATGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAGCTTCCTGATCAATTTTGGGGGTGGGGAGACACAGTAACTTATGCTATTTATCTTCTAAATAGAGCTTCAACGGAAAGTGTGCAATGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACTGTTAGTCACCTAAGAATGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAAAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGCTGGGTACAGTGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTATTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTCACCTTCTTCATCACACTCCACAAGTGATGAAGAAACTACTCCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTATACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGATATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCAAATGGATCTATAGAACAAAGCTAAAGCAAAACGGAGAAGTGCAAAAATACAAAGCCAGACTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTATGGATTATAAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATAACTGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTAAATGGGTATTTAGAGGATGAAATATATGTTGAGCAGCCCACCGGTTATGCAAAGATTGGAGAAGAAAATAAGGTGTATCGATTAAAGAAAGTCTTGTATGGGCTAAAGCAAGCACCAAGGGCTTGGTACAGTCGCATCGACAATTTTTTCTTAAAGGATGGTTTCAGAAGATGTCCATATGA

mRNA sequence

ATGTCATCTAACATGTTGCAGCCTCAACTTCCTCGTTTTGAGGGAAAAAACTATATGCGGTGGAGCCAGCAAATGAAAGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACAACGGATATTCAAAGCCAGAAAGTGAGAATGATCTTTTAGCACAACGACTCAATGAGTTGAGAGATGCTAGAAAAAAGAATAAGAAGGCATTATTTTTCATCTACCAAGCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAATGTGAAGAAAATGCAAAATTGGTCCGATTACAAACACTTCGAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTGAAGAAATTTTCAACTGTAAGAAGCTTTTCATATGCAGTCCTCCTATTGAGGTCGATCCAATGGAAGAAGATGTGGACGTGGTGGCAGTGGCAATGGACGATCCAACGTTACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGACTAATTCTAATCAAGCAGAAACCACACTAATGCATGAGCAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAAGAATCAAGCACTGAAGAAATATGGTATCTTGATAGTGGTTGTAGTAATCACATGACAAGAAGAAAGGATATTTTTATATCTGTAGATGAATCTCATCAAAATGTAGTGAAGATTGGTCTCAAACACAATCTTTTAAGTGTTGGACAACTTCTCCTAAGAGGACATGAGTGCTTGATTTTTGAGCTTGTTCATACAGACTTATGTGGACCTATGAGAACTACTACGCATGGAGATTTCTTGAAGGAAAATGGAATCAAGCATCAGAAGACTGTTCGAAGAACTCCTCAACAAAACGGAGTTGCAGAGAGGAAAAATAGAATAATAATGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAGCTTCCTGATCAATTTTGGGGGTGGGGAGACACAGTAACTTATGCTATTTATCTTCTAAATAGAGCTTCAACGGAAAGTGTGCAATGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACTGTTAGTCACCTAAGAATGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAAAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGCTGGGTACAGTGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTATTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTCACCTTCTTCATCACACTCCACAAGTGATGAAGAAACTACTCCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTATACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGATATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCAAATGGATCTATAGAACAAAGCTAAAGCAAAACGGAGAAGTGCAAAAATACAAAGCCAGACTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTATGGATTATAAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATAACTGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTAAATGGGTATTTAGAGGATGAAATATATGTTGAGCAGCCCACCGGTTATGCAAAGATTGGAGAAGAAAATAAGAAGATGTCCATATGA

Coding sequence (CDS)

ATGTCATCTAACATGTTGCAGCCTCAACTTCCTCGTTTTGAGGGAAAAAACTATATGCGGTGGAGCCAGCAAATGAAAGTTCTTTATGGATCTCAAGATCTTTGGGATATTGTTGACAACGGATATTCAAAGCCAGAAAGTGAGAATGATCTTTTAGCACAACGACTCAATGAGTTGAGAGATGCTAGAAAAAAGAATAAGAAGGCATTATTTTTCATCTACCAAGCTGTGGATGAAAATATTTTTGAAAGAATATCAGGAGTCTCTACTGCTAAAGCAGCATGGGATGCATTGCAAAATTTGTATGAATGTGAAGAAAATGCAAAATTGGTCCGATTACAAACACTTCGAGCTGAATTTGATACAATTCGAATGAAAGATTCTGAAACTATTGAAGAAATTTTCAACTGTAAGAAGCTTTTCATATGCAGTCCTCCTATTGAGGTCGATCCAATGGAAGAAGATGTGGACGTGGTGGCAGTGGCAATGGACGATCCAACGTTACGTTATGGACATTTTCAAGCAGACTGTTGGTCTAAGAAGACTAATTCTAATCAAGCAGAAACCACACTAATGCATGAGCAATCAAATAATGATCAAGGTCTTCTCTTCCTCACTCTCAATGTTCAAGAATCAAGCACTGAAGAAATATGGTATCTTGATAGTGGTTGTAGTAATCACATGACAAGAAGAAAGGATATTTTTATATCTGTAGATGAATCTCATCAAAATGTAGTGAAGATTGGTCTCAAACACAATCTTTTAAGTGTTGGACAACTTCTCCTAAGAGGACATGAGTGCTTGATTTTTGAGCTTGTTCATACAGACTTATGTGGACCTATGAGAACTACTACGCATGGAGATTTCTTGAAGGAAAATGGAATCAAGCATCAGAAGACTGTTCGAAGAACTCCTCAACAAAACGGAGTTGCAGAGAGGAAAAATAGAATAATAATGGAACTTGCAAGAAGTATGTTGAAGGCAAAGAAGCTTCCTGATCAATTTTGGGGGTGGGGAGACACAGTAACTTATGCTATTTATCTTCTAAATAGAGCTTCAACGGAAAGTGTGCAATGTATTACTCCTCAAGAAGCATGGAGCGGATTGAAACCAACTGTTAGTCACCTAAGAATGTTTGGGTGCATTGCTTACTCTCACATTTCAGATGAGAAAAAAGGTAAGCTAGATGATAAATCAGAAAAATGCATTTTTGCTGGGTACAGTGAGAACTCCAAGGCCTACAGACTATACAACCCGATAAGTAAGAAAGTTATTATTAGTCGAGATGTCAAGTTCGATGAAGCAAAATTGTGGCAATGGAATGCACCAAATGAAGACCAAAATCCATTACATGTTGATATGGATGGAAAAAAAGATGCTCGAGACTTGGAGCTTGAAGTAACTCAACCACTGACTTCACCTTCTTCATCACACTCCACAAGTGATGAAGAAACTACTCCAAGGAAGACCAGAAATATTCAAGAGATCTATAATACTTCAAGAAGGATACTAGATGAAGAACATGTTGATTTTGCTTTATTTGCAAATGTTGATCCTGTATACTTTGAAGAAGCAATTCAAGATGAAAATTGGAAAGATGCAATGAATCAAGAGATTGATGCAATAAGAAGAAACGAGATATGGGAGTTAGTAAAATTACCAGAAAATAAAAGGGCTCTTGGAGTCAAATGGATCTATAGAACAAAGCTAAAGCAAAACGGAGAAGTGCAAAAATACAAAGCCAGACTCGTTGTAAAAGGTTACAAACAAAAGTTTGGTATGGATTATAAAGAAGTTTTTGCACCGGTAACTCGCTTGGAGACTGTTCGTTTGTTGTTAGCCCTTGCAGCAAAAAATAACTGGAAAGTTCATCAAATGGATGTAAAGTCAGCATTCCTAAATGGGTATTTAGAGGATGAAATATATGTTGAGCAGCCCACCGGTTATGCAAAGATTGGAGAAGAAAATAAGAAGATGTCCATATGA
Homology
[Close]
BLAST of CSPI01G13260 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.2e-64
Identity = 147/418 (35.17%), Postives = 240/418 (57.42%), Query Frame = 1 

Query: 273 VHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLKAKKLP 332
           + +D  G   +    ++   +GI+H+KTV  TPQ NGVAER NR I+E  RSML+  KLP
Sbjct: 547 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 606

Query: 333 DQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHISDEKK 392
             FWG  + V  A YL+NR+ +  +    P+  W+  + + SHL++FGC A++H+  E++
Sbjct: 607 KSFWG--EAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQR 666

Query: 393 GKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQNPLHV 452
            KLDDKS  CIF GY +    YRL++P+ KKVI SRDV F E+++               
Sbjct: 667 TKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEV-----------RTAA 726

Query: 453 DMDGKKDARDLELEVTQPLTS--PSSSHSTSDE------------ETTPRKTRNIQEIYN 512
           DM  K     +   VT P TS  P+S+ ST+DE            E   +    ++E+ +
Sbjct: 727 DMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEH 786

Query: 513 TSR--------RILDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQ-EIDAI------- 572
            ++        R  +   V+   + + + V   +  + E+ K+ ++  E + +       
Sbjct: 787 PTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEE 846

Query: 573 ----RRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKE 632
               ++N  ++LV+LP+ KR L  KW+++ K   + ++ +YKARLVVKG++QK G+D+ E
Sbjct: 847 MESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDE 906

Query: 633 VFAPVTRLETVRLLLALAAKNNWKVHQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEEN 657
           +F+PV ++ ++R +L+LAA  + +V Q+DVK+AFL+G LE+EIY+EQP G+   G+++
Sbjct: 907 IFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKH 951

[Close]
BLAST of CSPI01G13260 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-26
Identity = 79/253 (31.23%), Postives = 126/253 (49.80%), Query Frame = 1 

Query: 433  DEAKLWQWNAPNEDQNPLHVDM-------------DGKKDARDLELEVTQPLTSPSSS-- 492
            D  K+ Q   PNE +   ++               + KK  RD  L  ++   +P+ S  
Sbjct: 771  DSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRE 830

Query: 493  -----HSTSDEETTPRKTRNIQEIYNTSRRILDEEHVDF---------------ALFANV 552
                 H        P K   I+ I   S R+  +  + +                +F +V
Sbjct: 831  SETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDV 890

Query: 553  DPVYFEEAIQDE--NWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGE 612
               + E   +D+  +W++A+N E++A + N  W + K PENK  +  +W++  K  + G 
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950

Query: 613  VQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQMDVKSAFLNG 649
              +YKARLV +G+ QK+ +DY+E FAPV R+ + R +L+L  + N KVHQMDVK+AFLNG
Sbjct: 951  PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1010

[Close]
BLAST of CSPI01G13260 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-16
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 525 AIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQKYKARLV 584
           A++D  W  AM +E+DA+ RN+ W LV  P N+  LG KW+++TKL  +G + + KARLV
Sbjct: 34  ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93

Query: 585 VKGYKQKFGMDYKEVFAPVTRLETVRLLLALA 617
            KG+ Q+ G+ + E ++PV R  T+R +L +A
Sbjct: 94  AKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CSPI01G13260 vs. Swiss-Prot
Match: M710_ARATH (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-08
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1 

Query: 315 NRIIMELARSMLKAKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVS 374
           NR I+E  RSML    LP  F    D    A++++N+  + ++    P E W    PT S
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRA--DAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYS 61

Query: 375 HLRMFGCIAYSHISDEKKGKLDDKSEK 402
           +LR FGC+AY H  +   GKL  +++K
Sbjct: 62  YLRRFGCVAYIHCDE---GKLKPRAKK 83

[Close]
BLAST of CSPI01G13260 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 2.4e-131
Identity = 237/374 (63.37%), Postives = 298/374 (79.68%), Query Frame = 1 

Query: 287 GDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLKAKKLPDQFWGWGDTVTYAI 346
           G+F KE GI HQ T R T QQNGVAERKNR IME+ARSMLKAK LP++FWG  D V   +
Sbjct: 567 GNFFKEQGIHHQMTARMTTQQNGVAERKNRTIMEMARSMLKAKNLPNEFWG--DAVACTV 626

Query: 347 YLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHISDEKKGKLDDKSEKCIFAG 406
           Y+LNRA T+SV  +TP EAW   KP+VSHL++F  IAYSHI ++ +GKLDDKSEKCI  G
Sbjct: 627 YILNRAPTKSVPGMTPYEAWCDEKPSVSHLKVFRSIAYSHIPNQLRGKLDDKSEKCIMVG 686

Query: 407 YSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAP-NEDQNPLHVDMDGKKDARDLEL 466
           Y+ENSKAYRLYNP+S+K+II+RDV F E + W WN   +E ++P HV+++  + A++LE 
Sbjct: 687 YNENSKAYRLYNPVSRKIIINRDVIFSEDESWNWNDDVDEAKSPFHVNINENEVAQELEQ 746

Query: 467 EVTQPLTSPSSS--HSTSDEETTPRKTRNIQEIYNTSRRILDEEHVDFALFANVDPVYFE 526
              Q + S SSS   STS++E +PR+ R+IQEIYN + RI  +   +FALFA V PV F+
Sbjct: 747 AKIQAVESSSSSTSSSTSNDEISPRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFD 806

Query: 527 EAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQKYKARL 586
           EAIQDE WK AM+QEIDAIRRNE WEL++LP NK+ALGVKW+YRTKLK +G V+ YKARL
Sbjct: 807 EAIQDEKWKIAMDQEIDAIRRNETWELMELPTNKQALGVKWVYRTKLKSDGNVEIYKARL 866

Query: 587 VVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQMDVKSAFLNGYLEDEIYV 646
           VVKGYKQ++G+DY+E+FAPVTR+ET+RL+L+LAA+N WKVHQMD+KSAFLNG+L+DEI+V
Sbjct: 867 VVKGYKQEYGVDYEEIFAPVTRIETIRLILSLAAQNGWKVHQMDIKSAFLNGHLKDEIFV 926

Query: 647 EQPTGYAKIGEENK 658
            QP GY + GEE K
Sbjct: 927 AQPLGYVQRGEEEK 938

[Close]
BLAST of CSPI01G13260 vs. TrEMBL
Match: A0A068B703_GOSBA (Polyprotein OS=Gossypium barbadense PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.3e-113
Identity = 203/392 (51.79%), Postives = 284/392 (72.45%), Query Frame = 1 

Query: 271 ELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLKAKK 330
           +++ +D  G      +  F K++GI HQ T RRTPQQNGVAERKNR I+++ARSM+K K 
Sbjct: 608 KILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKH 667

Query: 331 LPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHISDE 390
           LP  FW   + V  A+YLLN+  T+SV+  TP+EAWSG KP V HL++FGCIAY+H+ ++
Sbjct: 668 LPRTFWA--EAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQ 727

Query: 391 KKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQNPL 450
           ++ KLDD+ EKCIF GY + SKAYRLYNP++KK+IISRDV+FDEA  W+W+   +    L
Sbjct: 728 QRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYWRWSEEEKKVEGL 787

Query: 451 HVDMD--GKKDARDLELEVTQPLTSPSSSHSTSDEETTPRKTRNIQEIYNTSRRILDEEH 510
             + D   +++  D +   T   +SP+SS  +S  +  P +TR++ +IYN++  +  E  
Sbjct: 788 FFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSLNDIYNSTEPV--ETQ 847

Query: 511 VDFALFA---NVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWI 570
            D++LF      DPV +EEAI++  WK AM++EI AIRRN+ WEL  LPE    +GVKW+
Sbjct: 848 FDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTSLPEGHSPIGVKWV 907

Query: 571 YRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQ 630
           Y+TK  + G+V+KYKARLV KGYKQ+ G+DY E+FAPV R++T+RLL+A+AA+  WK++Q
Sbjct: 908 YKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLIAVAAQYKWKIYQ 967

Query: 631 MDVKSAFLNGYLEDEIYVEQPTGYAKIGEENK 658
           MDVKSAFLNGYLE+E+Y+EQP GY+  G+E+K
Sbjct: 968 MDVKSAFLNGYLEEEVYIEQPPGYSIQGKEDK 995

[Close]
BLAST of CSPI01G13260 vs. TrEMBL
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.3e-112
Identity = 211/398 (53.02%), Postives = 280/398 (70.35%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGVAERKNR I+E+ARSMLK
Sbjct: 85  LVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 144

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 145 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 204

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 205 PDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 264

Query: 448 NPL-HVDMDGKKDARDL--ELEVTQPLTSPSSSH-STSDEETTPRKTRNIQEIYNTSRRI 507
           N   H + D  +  R+     E T P TSP+SS    S  E TPR  R+IQE+Y  +   
Sbjct: 265 NFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR-FRSIQELYEVTEN- 324

Query: 508 LDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVK 567
             E    F LFA  +P+ F+EAI+ + W++AM++EI +I++N+ WEL  LP   +A+GVK
Sbjct: 325 -QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 384

Query: 568 WIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKV 627
           W+Y+ K    GEV++YKARLV KGY Q+ G+DY E+FAPV RLETVRL+++LAA+N WK+
Sbjct: 385 WVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKI 444

Query: 628 HQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           HQMDVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 445 HQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 477

[Close]
BLAST of CSPI01G13260 vs. TrEMBL
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein OS=Arabidopsis thaliana GN=T16L24.270 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.3e-112
Identity = 211/398 (53.02%), Postives = 280/398 (70.35%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGVAERKNR I+E+ARSMLK
Sbjct: 588 LVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 647

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 648 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 707

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 708 PDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 767

Query: 448 NPL-HVDMDGKKDARDL--ELEVTQPLTSPSSSH-STSDEETTPRKTRNIQEIYNTSRRI 507
           N   H + D  +  R+     E T P TSP+SS    S  E TPR  R+IQE+Y  +   
Sbjct: 768 NFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR-FRSIQELYEVTEN- 827

Query: 508 LDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVK 567
             E    F LFA  +P+ F+EAI+ + W++AM++EI +I++N+ WEL  LP   +A+GVK
Sbjct: 828 -QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 887

Query: 568 WIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKV 627
           W+Y+ K    GEV++YKARLV KGY Q+ G+DY E+FAPV RLETVRL+++LAA+N WK+
Sbjct: 888 WVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKI 947

Query: 628 HQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           HQMDVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 948 HQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 980

[Close]
BLAST of CSPI01G13260 vs. TrEMBL
Match: Q9C536_ARATH (Copia-type polyprotein, putative OS=Arabidopsis thaliana GN=T18I24.5 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.3e-104
Identity = 197/395 (49.87%), Postives = 264/395 (66.84%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGVAERKNR I+E+ARSMLK
Sbjct: 588 LVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 647

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 648 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 707

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 708 PDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 767

Query: 448 NPL-HVDMDGKKDARDLELEVTQPLTSPSSSHSTSDEETTPRKTRNIQEIYNTSRRILDE 507
           N   H + D  +  R+ E    +P T P+S  S+  EE                      
Sbjct: 768 NFFPHFEEDKPEPTRE-EPPSEEPTTPPTSPTSSQIEE---------------------- 827

Query: 508 EHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIY 567
                      +P+ F+EAI+ + W++AM++EI +I++N+ WEL  LP   +A+GVKW+Y
Sbjct: 828 ---------KCEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVY 887

Query: 568 RTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQM 627
           + K    GEV++YKARLV KGY Q+ G+DY EVFAPV RLETVRL+++LAA+N WK+HQM
Sbjct: 888 KAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQM 947

Query: 628 DVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           DVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 948 DVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 948

[Close]
BLAST of CSPI01G13260 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 130.2 bits (326), Expect = 4.8e-30
Identity = 74/193 (38.34%), Postives = 111/193 (57.51%), Query Frame = 1 

Query: 474 PSSSHSTSDEETTPRKTRNIQEIYNTSRRILDEEHVD-FALFANVDPVY----------- 533
           P  S  TS   T  RK   +Q+ Y  S   L    +  F  +  V P+Y           
Sbjct: 27  PEPSVHTSHRRT--RKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAK 86

Query: 534 ----FEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQ 593
               + EA +   W  AM+ EI A+     WE+  LP NK+ +G KW+Y+ K   +G ++
Sbjct: 87  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 146

Query: 594 KYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQMDVKSAFLNGYL 651
           +YKARLV KGY Q+ G+D+ E F+PV +L +V+L+LA++A  N+ +HQ+D+ +AFLNG L
Sbjct: 147 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 206

[Close]
BLAST of CSPI01G13260 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-17
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 525 AIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQKYKARLV 584
           A++D  W  AM +E+DA+ RN+ W LV  P N+  LG KW+++TKL  +G + + KARLV
Sbjct: 34  ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93

Query: 585 VKGYKQKFGMDYKEVFAPVTRLETVRLLLALA 617
            KG+ Q+ G+ + E ++PV R  T+R +L +A
Sbjct: 94  AKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CSPI01G13260 vs. TAIR10
Match: AT1G48720.1 (AT1G48720.1 unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-16
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 1  MSSNMLQPQLPRFEGKNYMRWSQQMKVLYGSQDLWDIVDNGYSKPESENDLLAQRLNELR 60
          M+SN +  Q+P     NY  WS +MK + G+ D+W+IV+ G+ +PE+E  L   + + LR
Sbjct: 1  MASNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLR 60

Query: 61 DARKKNKKALFFIYQAVDENIFERISGVSTAK 93
          D+RK++KKAL  IYQ +DE+ FE++   ++AK
Sbjct: 61 DSRKRDKKALCLIYQGLDEDTFEKVVEATSAK 92

[Close]
BLAST of CSPI01G13260 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-09
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1 

Query: 315 NRIIMELARSMLKAKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVS 374
           NR I+E  RSML    LP  F    D    A++++N+  + ++    P E W    PT S
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRA--DAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYS 61

Query: 375 HLRMFGCIAYSHISDEKKGKLDDKSEK 402
           +LR FGC+AY H  +   GKL  +++K
Sbjct: 62  YLRRFGCVAYIHCDE---GKLKPRAKK 83

[Close]
BLAST of CSPI01G13260 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 477.6 bits (1228), Expect = 3.4e-131
Identity = 237/374 (63.37%), Postives = 298/374 (79.68%), Query Frame = 1 

Query: 287 GDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLKAKKLPDQFWGWGDTVTYAI 346
           G+F KE GI HQ T R T QQNGVAERKNR IME+ARSMLKAK LP++FWG  D V   +
Sbjct: 567 GNFFKEQGIHHQMTARMTTQQNGVAERKNRTIMEMARSMLKAKNLPNEFWG--DAVACTV 626

Query: 347 YLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHISDEKKGKLDDKSEKCIFAG 406
           Y+LNRA T+SV  +TP EAW   KP+VSHL++F  IAYSHI ++ +GKLDDKSEKCI  G
Sbjct: 627 YILNRAPTKSVPGMTPYEAWCDEKPSVSHLKVFRSIAYSHIPNQLRGKLDDKSEKCIMVG 686

Query: 407 YSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAP-NEDQNPLHVDMDGKKDARDLEL 466
           Y+ENSKAYRLYNP+S+K+II+RDV F E + W WN   +E ++P HV+++  + A++LE 
Sbjct: 687 YNENSKAYRLYNPVSRKIIINRDVIFSEDESWNWNDDVDEAKSPFHVNINENEVAQELEQ 746

Query: 467 EVTQPLTSPSSS--HSTSDEETTPRKTRNIQEIYNTSRRILDEEHVDFALFANVDPVYFE 526
              Q + S SSS   STS++E +PR+ R+IQEIYN + RI  +   +FALFA V PV F+
Sbjct: 747 AKIQAVESSSSSTSSSTSNDEISPRRMRSIQEIYNNTNRINVDHFANFALFAGVGPVTFD 806

Query: 527 EAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWIYRTKLKQNGEVQKYKARL 586
           EAIQDE WK AM+QEIDAIRRNE WEL++LP NK+ALGVKW+YRTKLK +G V+ YKARL
Sbjct: 807 EAIQDEKWKIAMDQEIDAIRRNETWELMELPTNKQALGVKWVYRTKLKSDGNVEIYKARL 866

Query: 587 VVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQMDVKSAFLNGYLEDEIYV 646
           VVKGYKQ++G+DY+E+FAPVTR+ET+RL+L+LAA+N WKVHQMD+KSAFLNG+L+DEI+V
Sbjct: 867 VVKGYKQEYGVDYEEIFAPVTRIETIRLILSLAAQNGWKVHQMDIKSAFLNGHLKDEIFV 926

Query: 647 EQPTGYAKIGEENK 658
            QP GY + GEE K
Sbjct: 927 AQPLGYVQRGEEEK 938

[Close]
BLAST of CSPI01G13260 vs. NCBI nr
Match: gi|651219311|gb|AIC77183.1| (polyprotein [Gossypium barbadense])

HSP 1 Score: 418.7 bits (1075), Expect = 1.9e-113
Identity = 203/392 (51.79%), Postives = 284/392 (72.45%), Query Frame = 1 

Query: 271 ELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLKAKK 330
           +++ +D  G      +  F K++GI HQ T RRTPQQNGVAERKNR I+++ARSM+K K 
Sbjct: 608 KILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKH 667

Query: 331 LPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHISDE 390
           LP  FW   + V  A+YLLN+  T+SV+  TP+EAWSG KP V HL++FGCIAY+H+ ++
Sbjct: 668 LPRTFWA--EAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQ 727

Query: 391 KKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQNPL 450
           ++ KLDD+ EKCIF GY + SKAYRLYNP++KK+IISRDV+FDEA  W+W+   +    L
Sbjct: 728 QRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYWRWSEEEKKVEGL 787

Query: 451 HVDMD--GKKDARDLELEVTQPLTSPSSSHSTSDEETTPRKTRNIQEIYNTSRRILDEEH 510
             + D   +++  D +   T   +SP+SS  +S  +  P +TR++ +IYN++  +  E  
Sbjct: 788 FFNEDDNNQEEQGDDQSPGTTAPSSPTSSSGSSSLDEAPTRTRSLNDIYNSTEPV--ETQ 847

Query: 511 VDFALFA---NVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVKWI 570
            D++LF      DPV +EEAI++  WK AM++EI AIRRN+ WEL  LPE    +GVKW+
Sbjct: 848 FDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAAIRRNDTWELTSLPEGHSPIGVKWV 907

Query: 571 YRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKVHQ 630
           Y+TK  + G+V+KYKARLV KGYKQ+ G+DY E+FAPV R++T+RLL+A+AA+  WK++Q
Sbjct: 908 YKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLIAVAAQYKWKIYQ 967

Query: 631 MDVKSAFLNGYLEDEIYVEQPTGYAKIGEENK 658
           MDVKSAFLNGYLE+E+Y+EQP GY+  G+E+K
Sbjct: 968 MDVKSAFLNGYLEEEVYIEQPPGYSIQGKEDK 995

[Close]
BLAST of CSPI01G13260 vs. NCBI nr
Match: gi|1769898|emb|CAA69272.1| (lectin receptor kinase [Arabidopsis thaliana])

HSP 1 Score: 413.7 bits (1062), Expect = 6.1e-112
Identity = 211/398 (53.02%), Postives = 280/398 (70.35%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGVAERKNR I+E+ARSMLK
Sbjct: 85  LVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 144

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 145 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 204

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 205 PDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 264

Query: 448 NPL-HVDMDGKKDARDL--ELEVTQPLTSPSSSH-STSDEETTPRKTRNIQEIYNTSRRI 507
           N   H + D  +  R+     E T P TSP+SS    S  E TPR  R+IQE+Y  +   
Sbjct: 265 NFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR-FRSIQELYEVTEN- 324

Query: 508 LDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVK 567
             E    F LFA  +P+ F+EAI+ + W++AM++EI +I++N+ WEL  LP   +A+GVK
Sbjct: 325 -QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 384

Query: 568 WIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKV 627
           W+Y+ K    GEV++YKARLV KGY Q+ G+DY E+FAPV RLETVRL+++LAA+N WK+
Sbjct: 385 WVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKI 444

Query: 628 HQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           HQMDVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 445 HQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 477

[Close]
BLAST of CSPI01G13260 vs. NCBI nr
Match: gi|6996308|emb|CAB75469.1| (copia-type reverse transcriptase-like protein [Arabidopsis thaliana])

HSP 1 Score: 413.7 bits (1062), Expect = 6.1e-112
Identity = 211/398 (53.02%), Postives = 280/398 (70.35%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGVAERKNR I+E+ARSMLK
Sbjct: 588 LVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLK 647

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 648 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 707

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 708 PDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 767

Query: 448 NPL-HVDMDGKKDARDL--ELEVTQPLTSPSSSH-STSDEETTPRKTRNIQEIYNTSRRI 507
           N   H + D  +  R+     E T P TSP+SS    S  E TPR  R+IQE+Y  +   
Sbjct: 768 NFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR-FRSIQELYEVTEN- 827

Query: 508 LDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVK 567
             E    F LFA  +P+ F+EAI+ + W++AM++EI +I++N+ WEL  LP   +A+GVK
Sbjct: 828 -QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 887

Query: 568 WIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKV 627
           W+Y+ K    GEV++YKARLV KGY Q+ G+DY E+FAPV RLETVRL+++LAA+N WK+
Sbjct: 888 WVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKI 947

Query: 628 HQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           HQMDVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 948 HQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 980

[Close]
BLAST of CSPI01G13260 vs. NCBI nr
Match: gi|6850900|emb|CAB71063.1| (copia-type polyprotein [Arabidopsis thaliana])

HSP 1 Score: 411.4 bits (1056), Expect = 3.0e-111
Identity = 210/398 (52.76%), Postives = 279/398 (70.10%), Query Frame = 1 

Query: 268 LIFELVHTDLCGPMRTTTHGDFLKENGIKHQKTVRRTPQQNGVAERKNRIIMELARSMLK 327
           L+ + + +D  G   +     + ++NGI+ Q TV R+PQQNGV ERKNR I+E+ARSMLK
Sbjct: 588 LVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLK 647

Query: 328 AKKLPDQFWGWGDTVTYAIYLLNRASTESVQCITPQEAWSGLKPTVSHLRMFGCIAYSHI 387
           +K+LP + W   + V  A+YLLNR+ T+SV   TPQEAWSG KP VSHLR+FG IA++H+
Sbjct: 648 SKRLPKELWA--EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHV 707

Query: 388 SDEKKGKLDDKSEKCIFAGYSENSKAYRLYNPISKKVIISRDVKFDEAKLWQWNAPNEDQ 447
            DEK+ KLDDKSEK IF GY  NSK Y+LYNP +KK IISR++ FDE   W WN+  ED 
Sbjct: 708 PDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDY 767

Query: 448 NPL-HVDMDGKKDARDL--ELEVTQPLTSPSSSH-STSDEETTPRKTRNIQEIYNTSRRI 507
           N   H + D  +  R+     E T P TSP+SS    S  E TPR  R+IQE+Y  +   
Sbjct: 768 NFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPR-FRSIQELYEVTEN- 827

Query: 508 LDEEHVDFALFANVDPVYFEEAIQDENWKDAMNQEIDAIRRNEIWELVKLPENKRALGVK 567
             E    F LFA  +P+ F++AI+ + W++AM++EI +I++N+ WEL  LP   +A+GVK
Sbjct: 828 -QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 887

Query: 568 WIYRTKLKQNGEVQKYKARLVVKGYKQKFGMDYKEVFAPVTRLETVRLLLALAAKNNWKV 627
           W+Y+ K    GEV++YKARLV KGY Q+ G+DY EVFAPV RLETVRL+++LAA+N WK+
Sbjct: 888 WVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKI 947

Query: 628 HQMDVKSAFLNGYLEDEIYVEQPTGYAKIGEENKKMSI 662
           HQMDVKSAFLNG LE+E+Y+EQP GY   GEE+K + +
Sbjct: 948 HQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRL 980

The following BLAST results are available for this feature:
BLAST of CSPI01G13260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC6.2e-6435.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME2.3e-2631.23Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M820_ARATH3.7e-1643.48Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
M710_ARATH6.3e-0836.78Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CSPI01G13260 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YTD9_CUCME2.4e-13163.37Integrase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A068B703_GOSBA1.3e-11351.79Polyprotein OS=Gossypium barbadense PE=4 SV=1[more]
V9H0W6_ARATH4.3e-11253.02Lectin receptor kinase (Fragment) OS=Arabidopsis thaliana PE=4 SV=1[more]
Q9M197_ARATH4.3e-11253.02Copia-type reverse transcriptase-like protein OS=Arabidopsis thaliana GN=T16L24.... [more]
Q9C536_ARATH3.3e-10449.87Copia-type polyprotein, putative OS=Arabidopsis thaliana GN=T18I24.5 PE=4 SV=1[more]
BLAST of CSPI01G13260 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.14.8e-3038.34 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00820.12.1e-1743.48ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
AT1G48720.13.0e-1642.39 unknown protein[more]
ATMG00710.13.5e-0936.78ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CSPI01G13260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|150036244|gb|ABR67407.1|3.4e-13163.37integrase [Cucumis melo subsp. melo][more]
gi|651219311|gb|AIC77183.1|1.9e-11351.79polyprotein [Gossypium barbadense][more]
gi|1769898|emb|CAA69272.1|6.1e-11253.02lectin receptor kinase [Arabidopsis thaliana][more]
gi|6996308|emb|CAB75469.1|6.1e-11253.02copia-type reverse transcriptase-like protein [Arabidopsis thaliana][more]
gi|6850900|emb|CAB71063.1|3.0e-11152.76copia-type polyprotein [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13260.1CSPI01G13260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 210..370
score: 13
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 234..373
score: 1.6
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 271..379
score: 1.02
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 545..658
score: 6.6
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..657
score: 1.9E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 11..657
score: 1.9E
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 63..136
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G13260Cucurbita maxima (Rimu)cmacpiB205
CSPI01G13260Cucurbita maxima (Rimu)cmacpiB434
CSPI01G13260Cucurbita moschata (Rifu)cmocpiB192
CSPI01G13260Cucurbita moschata (Rifu)cmocpiB425
CSPI01G13260Cucumber (Chinese Long) v2cpicuB000
CSPI01G13260Melon (DHL92) v3.5.1cpimeB011
CSPI01G13260Watermelon (Charleston Gray)cpiwcgB040
CSPI01G13260Watermelon (97103) v1cpiwmB012
CSPI01G13260Cucurbita pepo (Zucchini)cpecpiB518
CSPI01G13260Cucurbita pepo (Zucchini)cpecpiB530
CSPI01G13260Bottle gourd (USVL1VR-Ls)cpilsiB046
CSPI01G13260Melon (DHL92) v3.6.1cpimedB011
CSPI01G13260Cucumber (Gy14) v2cgybcpiB001
CSPI01G13260Silver-seed gourdcarcpiB0477
CSPI01G13260Silver-seed gourdcarcpiB1105
CSPI01G13260Cucumber (Chinese Long) v3cpicucB001
CSPI01G13260Watermelon (97103) v2cpiwmbB034
CSPI01G13260Wax gourdcpiwgoB017
CSPI01G13260Wax gourdcpiwgoB049