CSPI01G12880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LOB domain-containing protein, putative
Location	Chr1 : 8397631 .. 8398867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTCGTCTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCCACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGTACTTCCTTGATCCCTAATTTTCTGTTTCTCTCTTTCAAATTTCGCTGTCTTTTCTTCTTGTTTCTATGTTTGAAAATTATGAATTCCGTTCTTGAAATTGAAAATTGACCTTAACAACTTAACGAAAAACCATCGTTCTGGCTGGAATGAAGTTTGACGAATTCACAATCCTATTATGTTTGATTGCTTTTGCTTGATGAAAATTTGGAGCTATTACGTTCATACATCATGAAAATTGGTAGAATCAAATGAAAACACCCAACTGTTCGATTAATGCCCTCGAACAATCCATCATATTGAATGTTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTGAATAGAATATAGGAAAGTTAAGTAGTTGAATATTGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGGGAAGAAAAAGGGATGATGTTTACTAGATAGAG

mRNA sequence

ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Coding sequence (CDS)

ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Homology

[Close]

BLAST of CSPI01G12880 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-50
Identity = 107/211 (50.71%), Postives = 137/211 (64.93%), Query Frame = 1


Query: 11  TSTLLLSHSPSPSPSPSPPPT----VQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDP 70
           T T    +SPSP+ SP PPP+     Q  VV++PCAACKILRRRC  KCVLAPYFPP+DP
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 71  LKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQI 130
            KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGC GAI  LQ+Q+
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 131 NELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLPEHRALDNSFNIVA 190
           +ELQA+LAKTQ ELV +   +++L+ LI   E  +          +    + ++    ++
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 191 TPQSYQGYTSLFGDSN--------IWDPLWT 209
           +P           D+N         WDPLWT
Sbjct: 202 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CSPI01G12880 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.6e-48
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1


Query: 19  SPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGA 78
           +P  S S SPPP++   VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGA
Sbjct: 12  TPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGA 71

Query: 79  SNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQA 138
           SNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGC GAI  LQ+Q++ELQA+LAK Q 
Sbjct: 72  SNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 131

Query: 139 ELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFG 198
           E+VN+   ++NL+ LI     Q      + S      + D  F      +S    + L+ 
Sbjct: 132 EMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF----ESNDLGF---LEDKSNTNSSMLW- 189

Query: 199 DSNIWDPLWT 209
               WDPLWT
Sbjct: 192 ----WDPLWT 189

[Close]

BLAST of CSPI01G12880 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-35
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICK 158
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 159 ELAQTPPPMSSSSLLPE 174
           +   +    SS  + P+
Sbjct: 132 DSPSSSGSPSSKQVSPQ 148

[Close]

BLAST of CSPI01G12880 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-35
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNI 144
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of CSPI01G12880 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 24  PSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 83
           P   PP T+     +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLNT---ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 84  LLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELV 142
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

[Close]

BLAST of CSPI01G12880 vs. TrEMBL
Match: A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-83
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1


Query: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 112 VYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 171
           VYGC GAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 69  VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 172 PEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           PEHR+LDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CSPI01G12880 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 130/216 (60.19%), Postives = 156/216 (72.22%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPP------PTVQAHVVVTPCAACKILRRRCTQK 60
           ME ++  +S T+    ++S SPS S SPP      P     VVV+PCAACKILRRRC  K
Sbjct: 1   MEYSEAAASNTAAAAATNSSSPSSSASPPQTPTFTPPPPVPVVVSPCAACKILRRRCADK 60

Query: 61  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 120
           CVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVYG
Sbjct: 61  CVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYG 120

Query: 121 CTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK--ELAQTPPPMSSSSLLP 180
           C GAIC LQKQI+ELQA+LAK QAELVN+ C Q NLVA++C   E+AQ+P   S  S+  
Sbjct: 121 CAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSSEQSV-- 180

Query: 181 EHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
                    N ++TPQSYQ       +SN+W+PLWT
Sbjct: 181 --------DNFISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of CSPI01G12880 vs. TrEMBL
Match: A0A0S3SCU3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G190300 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.1e-61
Identity = 133/219 (60.73%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSP---SPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVL 60
           MES+DT + PTS+  LSHSP   S SP P PPPTV    V++PCAACKILRRRC +KCVL
Sbjct: 1   MESSDTYT-PTSSAPLSHSPTSSSSSPPPPPPPTV----VMSPCAACKILRRRCAEKCVL 60

Query: 61  APYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTG 120
           APYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAV+S+VYEASARIRDPVYGC G
Sbjct: 61  APYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAG 120

Query: 121 AICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRAL 180
           AICQLQKQ+NELQA+LAK+QAELV +   Q NLVALIC E+AQ+P      S+       
Sbjct: 121 AICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSV------- 180

Query: 181 DNSFNIVATPQSYQGYTSLFGD--------SNIWDPLWT 209
               N ++TP    GY S   +        +++W+PLWT
Sbjct: 181 ---DNFISTPPHTGGYQSGVNNFFEENTSPNSLWEPLWT 204

[Close]

BLAST of CSPI01G12880 vs. TrEMBL
Match: A0A0L9V6W4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g155500 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.1e-61
Identity = 133/219 (60.73%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSP---SPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVL 60
           MES+DT + PTS+  LSHSP   S SP P PPPTV    V++PCAACKILRRRC +KCVL
Sbjct: 1   MESSDTYT-PTSSAPLSHSPTSSSSSPPPPPPPTV----VMSPCAACKILRRRCAEKCVL 60

Query: 61  APYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTG 120
           APYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAV+S+VYEASARIRDPVYGC G
Sbjct: 61  APYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAG 120

Query: 121 AICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRAL 180
           AICQLQKQ+NELQA+LAK+QAELV +   Q NLVALIC E+AQ+P      S+       
Sbjct: 121 AICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSV------- 180

Query: 181 DNSFNIVATPQSYQGYTSLFGD--------SNIWDPLWT 209
               N ++TP    GY S   +        +++W+PLWT
Sbjct: 181 ---DNFISTPPHTGGYQSGVNNFFEENTSPNSLWEPLWT 204

[Close]

BLAST of CSPI01G12880 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.0e-61
Identity = 128/211 (60.66%), Postives = 152/211 (72.04%), Query Frame = 1


Query: 3   STDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAH-VVVTPCAACKILRRRCTQKCVLAPYF 62
           +T T SSP S    S + S SP P PP T     VV++PCAACKILRRRC  KCVLAPYF
Sbjct: 17  TTTTTSSPQSLSPNSSNSSSSPPPPPPTTTSTPPVVISPCAACKILRRRCADKCVLAPYF 76

Query: 63  PPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQ 122
           PP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVYGC GAICQ
Sbjct: 77  PPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQ 136

Query: 123 LQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSF 182
           LQKQ+NELQA+LAK QAE+VN+   Q NLVAL+C E+AQ+P P S  S+           
Sbjct: 137 LQKQVNELQAQLAKAQAEVVNMQLQQANLVALLCVEMAQSPQPNSQQSV----------D 196

Query: 183 NIVATPQSYQGYTSLFGDSN----IWDPLWT 209
             +++P SYQ       D+N    +W+PLWT
Sbjct: 197 TFISSPPSYQSNPGFLEDNNNLGSLWEPLWT 217

[Close]

BLAST of CSPI01G12880 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-51
Identity = 107/211 (50.71%), Postives = 137/211 (64.93%), Query Frame = 1


Query: 11  TSTLLLSHSPSPSPSPSPPPT----VQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDP 70
           T T    +SPSP+ SP PPP+     Q  VV++PCAACKILRRRC  KCVLAPYFPP+DP
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 71  LKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQI 130
            KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGC GAI  LQ+Q+
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 131 NELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLPEHRALDNSFNIVA 190
           +ELQA+LAKTQ ELV +   +++L+ LI   E  +          +    + ++    ++
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 191 TPQSYQGYTSLFGDSN--------IWDPLWT 209
           +P           D+N         WDPLWT
Sbjct: 202 SPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CSPI01G12880 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-49
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1


Query: 19  SPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGA 78
           +P  S S SPPP++   VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGA
Sbjct: 12  TPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGA 71

Query: 79  SNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQA 138
           SNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGC GAI  LQ+Q++ELQA+LAK Q 
Sbjct: 72  SNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 131

Query: 139 ELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFG 198
           E+VN+   ++NL+ LI     Q      + S      + D  F      +S    + L+ 
Sbjct: 132 EMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF----ESNDLGF---LEDKSNTNSSMLW- 189

Query: 199 DSNIWDPLWT 209
               WDPLWT
Sbjct: 192 ----WDPLWT 189

[Close]

BLAST of CSPI01G12880 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-36
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 1


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICK 158
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 159 ELAQTPPPMSSSSLLPE 174
           +   +    SS  + P+
Sbjct: 132 DSPSSSGSPSSKQVSPQ 148

[Close]

BLAST of CSPI01G12880 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-36
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNI 144
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

[Close]

BLAST of CSPI01G12880 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 24  PSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 83
           P   PP T+     +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLNT---ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 84  LLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELV 142
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

[Close]

BLAST of CSPI01G12880 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.5e-112
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY
Sbjct: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHR+LDNS
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of CSPI01G12880 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 2.4e-99
Identity = 190/208 (91.35%), Postives = 196/208 (94.23%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MES + KSSPTSTLL   S SPSPSPSPPPTVQA VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESREVKSSPTSTLL---SQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSS SLLP+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 181 FNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of CSPI01G12880 vs. NCBI nr
Match: gi|700209659|gb|KGN64755.1| (hypothetical protein Csa_1G088450 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 1


Query: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 112 VYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 171
           VYGC GAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 69  VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 172 PEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           PEHR+LDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of CSPI01G12880 vs. NCBI nr
Match: gi|802551592|ref|XP_012064881.1| (PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas])

HSP 1 Score: 246.1 bits (627), Expect = 5.3e-62
Identity = 130/216 (60.19%), Postives = 156/216 (72.22%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPP------PTVQAHVVVTPCAACKILRRRCTQK 60
           ME ++  +S T+    ++S SPS S SPP      P     VVV+PCAACKILRRRC  K
Sbjct: 1   MEYSEAAASNTAAAAATNSSSPSSSASPPQTPTFTPPPPVPVVVSPCAACKILRRRCADK 60

Query: 61  CVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYG 120
           CVLAPYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAVSS+VYEASARIRDPVYG
Sbjct: 61  CVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYG 120

Query: 121 CTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK--ELAQTPPPMSSSSLLP 180
           C GAIC LQKQI+ELQA+LAK QAELVN+ C Q NLVA++C   E+AQ+P   S  S+  
Sbjct: 121 CAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCMEMAQSPQQSSEQSV-- 180

Query: 181 EHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
                    N ++TPQSYQ       +SN+W+PLWT
Sbjct: 181 --------DNFISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of CSPI01G12880 vs. NCBI nr
Match: gi|950940353|ref|XP_014492929.1| (PREDICTED: LOB domain-containing protein 1-like [Vigna radiata var. radiata])

HSP 1 Score: 243.8 bits (621), Expect = 2.6e-61
Identity = 135/219 (61.64%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 1   MESTDTKSSPTSTLLLSHSP---SPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVL 60
           MES+DT + PTS+  LSHSP   S SP P PPPTV    V++PCAACKILRRRC +KCVL
Sbjct: 1   MESSDTYT-PTSSAPLSHSPTSSSSSPPPPPPPTV----VMSPCAACKILRRRCAEKCVL 60

Query: 61  APYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTG 120
           APYFPP++P KFTIAHR+FGASNIIK L +LP+SQRADAV+S+VYEASARIRDPVYGC G
Sbjct: 61  APYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAG 120

Query: 121 AICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRAL 180
           AICQLQKQ+NELQA+LAK+QAELV +   Q NLVALIC E+AQ+P      S+       
Sbjct: 121 AICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSV------- 180

Query: 181 DNSFNIVATPQSYQGYTS----LFGDSN----IWDPLWT 209
               N ++TP    GY S     F D+     +W+PLWT
Sbjct: 181 ---DNFISTPPHTGGYQSGMNNFFEDNTSPNALWEPLWT 204

The following BLAST results are available for this feature:

BLAST of CSPI01G12880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD11_ARATH	3.6e-50	50.71	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD1_ARATH	2.6e-48	54.74	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD4_ARATH	5.5e-35	54.74	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	7.2e-35	62.86	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD15_ARATH	1.8e-33	55.93	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of CSPI01G12880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS55_CUCSA	1.3e-83	98.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088450 PE=4 SV=1	[more]
A0A067LHN9_JATCU	3.7e-62	60.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1	[more]
A0A0S3SCU3_PHAAN	3.1e-61	60.73	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G190300 PE=...	[more]
A0A0L9V6W4_PHAAN	3.1e-61	60.73	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g155500 PE=4 SV=1	[more]
A0A061GTD1_THECC	7.0e-61	60.66	LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1	[more]

BLAST of CSPI01G12880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28500.1	2.0e-51	50.71	LOB domain-containing protein 11	[more]
AT1G07900.1	1.4e-49	54.74	LOB domain-containing protein 1	[more]
AT1G31320.1	3.1e-36	54.74	LOB domain-containing protein 4	[more]
AT2G30130.1	4.1e-36	62.86	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	1.0e-34	55.93	LOB domain-containing protein 15	[more]

BLAST of CSPI01G12880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459130\|ref\|XP_004147299.1\|	2.5e-112	99.04	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659072131\|ref\|XP_008463550.1\|	2.4e-99	91.35	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|700209659\|gb\|KGN64755.1\|	1.9e-83	98.09	hypothetical protein Csa_1G088450 [Cucumis sativus]	[more]
gi\|802551592\|ref\|XP_012064881.1\|	5.3e-62	60.19	PREDICTED: LOB domain-containing protein 11-like [Jatropha curcas]	[more]
gi\|950940353\|ref\|XP_014492929.1\|	2.6e-61	61.64	PREDICTED: LOB domain-containing protein 1-like [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12880.1	CSPI01G12880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 40..137 score: 9.9
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 39..140 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 119..146 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 14..207 score: 5.0E
None	No IPR available	PANTHER	PTHR31301:SF6	SUBFAMILY NOT NAMED	coord: 14..207 score: 5.0E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G12880	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12880	Cucumber (Chinese Long) v3	cpicucB059
CSPI01G12880	Watermelon (97103) v2	cpiwmbB029
CSPI01G12880	Watermelon (97103) v2	cpiwmbB034
CSPI01G12880	Wax gourd	cpiwgoB019
CSPI01G12880	Wax gourd	cpiwgoB049
CSPI01G12880	Wild cucumber (PI 183967)	cpicpiB048
CSPI01G12880	Cucumber (Gy14) v1	cgycpiB327
CSPI01G12880	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G12880	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G12880	Cucurbita maxima (Rimu)	cmacpiB586
CSPI01G12880	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G12880	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G12880	Cucurbita moschata (Rifu)	cmocpiB574
CSPI01G12880	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12880	Cucumber (Chinese Long) v2	cpicuB048
CSPI01G12880	Melon (DHL92) v3.5.1	cpimeB010
CSPI01G12880	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G12880	Watermelon (Charleston Gray)	cpiwcgB035
CSPI01G12880	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G12880	Watermelon (97103) v1	cpiwmB012
CSPI01G12880	Watermelon (97103) v1	cpiwmB077
CSPI01G12880	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G12880	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G12880	Bottle gourd (USVL1VR-Ls)	cpilsiB004
CSPI01G12880	Bottle gourd (USVL1VR-Ls)	cpilsiB023
CSPI01G12880	Melon (DHL92) v3.6.1	cpimedB009
CSPI01G12880	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G12880	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12880	Silver-seed gourd	carcpiB0477