CSPI01G12590 (gene) Wild cucumber (PI 183967)

NameCSPI01G12590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionARM repeat superfamily protein
LocationChr1 : 8030731 .. 8031778 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTGTATGCCAGCCTCAAAGCATATCACCCTTCGACCAAAGTGGGCCTAGAAGAAGGTATTTGACCTCAATTAAGGTCGAAGATGACTCTGGCCAAATACGAAACATGGGATGTCCCTCAATCAATGATAATATTGAGCCATTTGTGGTTCTTATTAAAGTGGCATGCTCATACTTCTAAGATTGTTAATAAGAAAAGTTTAAGCTTGGCCCCAAAGTGGTCACCTAGAAACAAGTTTATAGGAAAATGGGATCAATATAGTAAATAACAAGAAGAGACCATATTGTTTTTCTAATAAAACGCCTCGGAAGCTTGTCCATTCCCTTCAGGATCTAAACGAGGGGAAATCTGACTATGCTAGCGGAAGTAGCCGATGTAGGCATAGGAGTTTGTCATCAGGGAATTTGGAGTGGAGTCCTCCAAGAGCATTTCTAAATCAAAACGGTTTTGCCGATGAACCAAAACTCAGCAAAGAGGATGAAGATGGCTTAGGCAACGGTAATGGTGAGCAATCACAAGGTAGTTACGAATCGATCTCTTCAGCCGATGGTGCCCCTACCCATGTTGATGTCCAAGCTATACCTGTGGCAGTGGCTTGTCAAAGTAAAATGAAACCTCAATATTATGGCATGGAGATGGCATATAAGAAGACTGCTTTGAAATTGGTATGTGGCTTTTCATTTTTGCTTTTTACAATATTCACTTCATTGCTATGGATTGATGATCACGACCAAGGTTCCTATCTTGTACCAACATAATGTTCTTGTTGTGCTTCAACTAAAATTGGGTTGAAGCTGTTTGTTGTAAGTTTTGTTGAGTTCAAATGTTGTGTGTCAAGTAGCAAGAAAGGCATATAGAAGTTTGAAGCAAAAGCAAATGTATTAGATTAGATGGATTTGGACAATGACTCAATGTAAGAATCCCAGTGTGGTCAATGAAGTTCTTGACTACAATAGGTATCTTTCTACCTTTGCAAATTATAGAATATGCTCGCTTTCTAGATTGATGTTGTAACATTTAGTTTGAATAGAGTACTTAGCTC

mRNA sequence

ATGTTTTGTGTATGCCAGCCTCAAAGCATATCACCCTTCGACCAAAGTGGGCCTAGAAGAAGGTATTTGACCTCAATTAAGGTCGAAGATGACTCTGGCCAAATACGAAACATGGGATGTCCCTCAATCAATGATAATATTGAGCCATTTGTGGATCTAAACGAGGGGAAATCTGACTATGCTAGCGGAAGTAGCCGATGTAGGCATAGGAGTTTGTCATCAGGGAATTTGGAGTGGAGTCCTCCAAGAGCATTTCTAAATCAAAACGGTTTTGCCGATGAACCAAAACTCAGCAAAGAGGATGAAGATGGCTTAGGCAACGGTAATGGTGAGCAATCACAAGGTAGTTACGAATCGATCTCTTCAGCCGATGGTGCCCCTACCCATGTTGATGTCCAAGCTATACCTGTGGCAGTGGCTTGTCAAAGTAAAATGAAACCTCAATATTATGGCATGGAGATGGCATATAAGAAGACTGCTTTGAAATTGGTATGTGGCTTTTCATTTTTGCTTTTTACAATATTCACTTCATTGCTATGGATTGATGATCACGACCAAGGTTCCTATCTTGTACCAACATAA

Coding sequence (CDS)

ATGTTTTGTGTATGCCAGCCTCAAAGCATATCACCCTTCGACCAAAGTGGGCCTAGAAGAAGGTATTTGACCTCAATTAAGGTCGAAGATGACTCTGGCCAAATACGAAACATGGGATGTCCCTCAATCAATGATAATATTGAGCCATTTGTGGATCTAAACGAGGGGAAATCTGACTATGCTAGCGGAAGTAGCCGATGTAGGCATAGGAGTTTGTCATCAGGGAATTTGGAGTGGAGTCCTCCAAGAGCATTTCTAAATCAAAACGGTTTTGCCGATGAACCAAAACTCAGCAAAGAGGATGAAGATGGCTTAGGCAACGGTAATGGTGAGCAATCACAAGGTAGTTACGAATCGATCTCTTCAGCCGATGGTGCCCCTACCCATGTTGATGTCCAAGCTATACCTGTGGCAGTGGCTTGTCAAAGTAAAATGAAACCTCAATATTATGGCATGGAGATGGCATATAAGAAGACTGCTTTGAAATTGGTATGTGGCTTTTCATTTTTGCTTTTTACAATATTCACTTCATTGCTATGGATTGATGATCACGACCAAGGTTCCTATCTTGTACCAACATAA
BLAST of CSPI01G12590 vs. TrEMBL
Match: A0A0A0KYP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192160 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.6e-75
Identity = 152/189 (80.42%), Postives = 157/189 (83.07%), Query Frame = 1

Query: 13  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGS 72
           F  S PRRR   S      +  +R+    ++ D I            DLNEGKSDYASGS
Sbjct: 440 FQMSPPRRRLSRSTT----TSPLRSRSYINVEDMIFKTPRKLVHSLQDLNEGKSDYASGS 499

Query: 73  SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD 132
           SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD
Sbjct: 500 SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD 559

Query: 133 GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH 192
           GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH
Sbjct: 560 GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH 619

Query: 193 DQGSYLVPT 194
           DQGSYLVPT
Sbjct: 620 DQGSYLVPT 624

BLAST of CSPI01G12590 vs. TrEMBL
Match: K7MHI2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G152900 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKLSKEDEDGLGNGNG 111
           DLN+  SD +   +R R +SLSSGN++WSP   +  +QNG AD      ++   L  GNG
Sbjct: 477 DLNDEISDCSEKPNR-RIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSL-YGNG 536

Query: 112 E-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSF 171
           + Q QG  ES+SS D  P + D+Q  P  V  +S+   +   ME  ++KT  KLVCG SF
Sbjct: 537 DIQFQGGPESVSSTDDIPGNTDLQR-PSEVGPESRNGTETVLMEKPFQKTTHKLVCGISF 596

Query: 172 LLFTIFTSLLWIDDHDQGSYLVPT 194
            L  I T LLWI+  D+G +LVPT
Sbjct: 597 ALLAIATPLLWINSQDEGHFLVPT 617

BLAST of CSPI01G12590 vs. TrEMBL
Match: A0A0B2RE67_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024115 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKLSKEDEDGLGNGNG 111
           DLN+  SD +   +R R +SLSSGN++WSP   +  +QNG AD      ++   L  GNG
Sbjct: 469 DLNDEISDCSEKPNR-RIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSL-YGNG 528

Query: 112 E-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSF 171
           + Q QG  ES+SS D  P + D+Q  P  V  +S+   +   ME  ++KT  KLVCG SF
Sbjct: 529 DIQFQGGPESVSSTDDIPGNTDLQR-PSEVGPESRNGTETVLMEKPFQKTTHKLVCGISF 588

Query: 172 LLFTIFTSLLWIDDHDQGSYLVPT 194
            L  I T LLWI+  D+G +LVPT
Sbjct: 589 ALLAIATPLLWINSQDEGHFLVPT 609

BLAST of CSPI01G12590 vs. TrEMBL
Match: I1MNT9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G152900 PE=4 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKLSKEDEDGLGNGNG 111
           DLN+  SD +   +R R +SLSSGN++WSP   +  +QNG AD      ++   L  GNG
Sbjct: 469 DLNDEISDCSEKPNR-RIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSL-YGNG 528

Query: 112 E-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSF 171
           + Q QG  ES+SS D  P + D+Q  P  V  +S+   +   ME  ++KT  KLVCG SF
Sbjct: 529 DIQFQGGPESVSSTDDIPGNTDLQR-PSEVGPESRNGTETVLMEKPFQKTTHKLVCGISF 588

Query: 172 LLFTIFTSLLWIDDHDQGSYLVPT 194
            L  I T LLWI+  D+G +LVPT
Sbjct: 589 ALLAIATPLLWINSQDEGHFLVPT 609

BLAST of CSPI01G12590 vs. TrEMBL
Match: A0A0B2NYW8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000340 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-13
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKL-SKEDEDGLGNGN 111
           DLN+  SD +   +R R +SLSSGN++ SP   +  +QNG AD     SKE     G+G+
Sbjct: 470 DLNDEISDCSEKPNR-RIKSLSSGNIKLSPASYSKYDQNGIADHVNYDSKESGSLCGDGD 529

Query: 112 GE-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFS 171
           G+ Q QG  ES+SS D  P + D+Q  P  V  +S+   +   M   ++KT  KLV G S
Sbjct: 530 GDVQFQGGLESVSSTDDIPCNTDMQK-PSEVGPESRNGTETVLMGKPFQKTKHKLVYGIS 589

Query: 172 FLLFTIFTSLLWIDDHDQGSYLVPT 194
           F L  I T  LWI+  DQG +LVPT
Sbjct: 590 FALLAIATPFLWINSQDQGHFLVPT 612

BLAST of CSPI01G12590 vs. NCBI nr
Match: gi|449459646|ref|XP_004147557.1| (PREDICTED: uncharacterized protein LOC101207432 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 2.3e-75
Identity = 152/189 (80.42%), Postives = 157/189 (83.07%), Query Frame = 1

Query: 13  FDQSGPRRRYLTSIKVEDDSGQIRNMGCPSINDNI--------EPFVDLNEGKSDYASGS 72
           F  S PRRR   S      +  +R+    ++ D I            DLNEGKSDYASGS
Sbjct: 440 FQMSPPRRRLSRSTT----TSPLRSRSYINVEDMIFKTPRKLVHSLQDLNEGKSDYASGS 499

Query: 73  SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD 132
           SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD
Sbjct: 500 SRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESISSAD 559

Query: 133 GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH 192
           GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH
Sbjct: 560 GAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWIDDH 619

Query: 193 DQGSYLVPT 194
           DQGSYLVPT
Sbjct: 620 DQGSYLVPT 624

BLAST of CSPI01G12590 vs. NCBI nr
Match: gi|659082681|ref|XP_008441975.1| (PREDICTED: uncharacterized protein LOC103485976 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 3.1e-64
Identity = 140/192 (72.92%), Postives = 145/192 (75.52%), Query Frame = 1

Query: 13  FDQSGPRRRYLTS-----------IKVEDDSGQIRNMGCPSINDNIEPFVDLNEGKSDYA 72
           F  S PRRR   S           IKVED       M   +    +    DLNE  SDYA
Sbjct: 440 FQMSPPRRRLSRSTTTSPLRSRSYIKVED-------MIFKTPRKLVHSLQDLNETNSDYA 499

Query: 73  SGSSRCRHRSLSSGNLEWSPPRAFLNQNGFADEPKLSKEDEDGLGNGNGEQSQGSYESIS 132
           SGSSR RHRSLSSGNLEWSPPRAFLN+NG ADE KLSKEDEDGL   NGEQSQGS ESIS
Sbjct: 500 SGSSRRRHRSLSSGNLEWSPPRAFLNRNGSADERKLSKEDEDGLDIDNGEQSQGSSESIS 559

Query: 133 SADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWI 192
           S DG PTHVDVQA+PVAV CQSK+KPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWI
Sbjct: 560 STDGVPTHVDVQAMPVAVTCQSKIKPQYYGMEMAYKKTALKLVCGFSFLLFTIFTSLLWI 619

Query: 193 DDHDQGSYLVPT 194
           DDHDQGSYLVPT
Sbjct: 620 DDHDQGSYLVPT 624

BLAST of CSPI01G12590 vs. NCBI nr
Match: gi|947059082|gb|KRH08488.1| (hypothetical protein GLYMA_16G152900 [Glycine max])

HSP 1 Score: 92.4 bits (228), Expect = 9.1e-16
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKLSKEDEDGLGNGNG 111
           DLN+  SD +   +R R +SLSSGN++WSP   +  +QNG AD      ++   L  GNG
Sbjct: 477 DLNDEISDCSEKPNR-RIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSL-YGNG 536

Query: 112 E-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSF 171
           + Q QG  ES+SS D  P + D+Q  P  V  +S+   +   ME  ++KT  KLVCG SF
Sbjct: 537 DIQFQGGPESVSSTDDIPGNTDLQR-PSEVGPESRNGTETVLMEKPFQKTTHKLVCGISF 596

Query: 172 LLFTIFTSLLWIDDHDQGSYLVPT 194
            L  I T LLWI+  D+G +LVPT
Sbjct: 597 ALLAIATPLLWINSQDEGHFLVPT 617

BLAST of CSPI01G12590 vs. NCBI nr
Match: gi|356559542|ref|XP_003548058.1| (PREDICTED: uncharacterized protein LOC100820627 [Glycine max])

HSP 1 Score: 92.4 bits (228), Expect = 9.1e-16
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKLSKEDEDGLGNGNG 111
           DLN+  SD +   +R R +SLSSGN++WSP   +  +QNG AD      ++   L  GNG
Sbjct: 469 DLNDEISDCSEKPNR-RIKSLSSGNIKWSPASYSKYDQNGIADHVNYDSKESGSL-YGNG 528

Query: 112 E-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFSF 171
           + Q QG  ES+SS D  P + D+Q  P  V  +S+   +   ME  ++KT  KLVCG SF
Sbjct: 529 DIQFQGGPESVSSTDDIPGNTDLQR-PSEVGPESRNGTETVLMEKPFQKTTHKLVCGISF 588

Query: 172 LLFTIFTSLLWIDDHDQGSYLVPT 194
            L  I T LLWI+  D+G +LVPT
Sbjct: 589 ALLAIATPLLWINSQDEGHFLVPT 609

BLAST of CSPI01G12590 vs. NCBI nr
Match: gi|734312494|gb|KHN00672.1| (hypothetical protein glysoja_000340 [Glycine soja])

HSP 1 Score: 82.4 bits (202), Expect = 9.5e-13
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1

Query: 52  DLNEGKSDYASGSSRCRHRSLSSGNLEWSPPR-AFLNQNGFADEPKL-SKEDEDGLGNGN 111
           DLN+  SD +   +R R +SLSSGN++ SP   +  +QNG AD     SKE     G+G+
Sbjct: 470 DLNDEISDCSEKPNR-RIKSLSSGNIKLSPASYSKYDQNGIADHVNYDSKESGSLCGDGD 529

Query: 112 GE-QSQGSYESISSADGAPTHVDVQAIPVAVACQSKMKPQYYGMEMAYKKTALKLVCGFS 171
           G+ Q QG  ES+SS D  P + D+Q  P  V  +S+   +   M   ++KT  KLV G S
Sbjct: 530 GDVQFQGGLESVSSTDDIPCNTDMQK-PSEVGPESRNGTETVLMGKPFQKTKHKLVYGIS 589

Query: 172 FLLFTIFTSLLWIDDHDQGSYLVPT 194
           F L  I T  LWI+  DQG +LVPT
Sbjct: 590 FALLAIATPFLWINSQDQGHFLVPT 612

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYP2_CUCSA1.6e-7580.42Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192160 PE=4 SV=1[more]
K7MHI2_SOYBN6.4e-1643.75Uncharacterized protein OS=Glycine max GN=GLYMA_16G152900 PE=4 SV=1[more]
A0A0B2RE67_GLYSO6.4e-1643.75Uncharacterized protein OS=Glycine soja GN=glysoja_024115 PE=4 SV=1[more]
I1MNT9_SOYBN6.4e-1643.75Uncharacterized protein OS=Glycine max GN=GLYMA_16G152900 PE=4 SV=2[more]
A0A0B2NYW8_GLYSO6.6e-1342.76Uncharacterized protein OS=Glycine soja GN=glysoja_000340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449459646|ref|XP_004147557.1|2.3e-7580.42PREDICTED: uncharacterized protein LOC101207432 [Cucumis sativus][more]
gi|659082681|ref|XP_008441975.1|3.1e-6472.92PREDICTED: uncharacterized protein LOC103485976 [Cucumis melo][more]
gi|947059082|gb|KRH08488.1|9.1e-1643.75hypothetical protein GLYMA_16G152900 [Glycine max][more]
gi|356559542|ref|XP_003548058.1|9.1e-1643.75PREDICTED: uncharacterized protein LOC100820627 [Glycine max][more]
gi|734312494|gb|KHN00672.1|9.5e-1342.76hypothetical protein glysoja_000340 [Glycine soja][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12590.1CSPI01G12590.1mRNA