CSPI01G11270 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G11270
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPolygalacturonase
LocationChr1 : 7011749 .. 7012054 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAAATTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACATAGATGGAATTCATGTGAGTAGTTCAGAAGAGATTAACATTCTCAATACCAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACGAACAGTTATTAGTGATGTTACTTGCGGACCGGGTCATGGAATTAACACAGGAAGTTGGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGA

mRNA sequence

ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAAATTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACATAGATGGAATTCATGTGAGTAGTTCAGAAGAGATTAACATTCTCAATACCAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACGAACAGTTATTAGTGATGTTACTTGCGGACCGGGTCATGGAATTAACACAGGAAGTTGGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGA

Coding sequence (CDS)

ATGGTAAAGGACATAACGTCATTAGATAGCAAGAATTATCATATTAAATTTTTGGGTTGCAAGAATCTTACCATTGACCACGTGACAATTATTGCATTGGAGAATAATCTCAACATAGATGGAATTCATGTGAGTAGTTCAGAAGAGATTAACATTCTCAATACCAATATCACTATCGAAGATGATTGTATATTTGTGAAAAATACCAACAAACGAACAGTTATTAGTGATGTTACTTGCGGACCGGGTCATGGAATTAACACAGGAAGTTGGGAAAAATATAGCAAGGAAAAAGAAGTGGTATGA
Homology
[Close]
BLAST of CSPI01G11270 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-24
Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +++D+T+LDSKN+H+  +GCKNLT +   I A E ++N DGIH+  S+ +NI+NT I   
Sbjct: 119 ILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTG 178

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI + + +K   I+++TCGPGHGI+ GS  +Y  E+ VV
Sbjct: 179 DDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVV 219

[Close]
BLAST of CSPI01G11270 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           MV+DITSL+SK +HI  L C+++T  HVT+ A   ++N DGIHV  S+ + I NT I   
Sbjct: 140 MVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATG 199

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DDCI +   ++   I+ V CGPGHGI+ GS  +Y+ EKEV
Sbjct: 200 DDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEV 239

[Close]
BLAST of CSPI01G11270 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-21
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +V+ +TS DSKN+H+   GCKN+T D  TI A  ++ N DGIH+  S ++ ILNTNI   
Sbjct: 159 IVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTG 218

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DDC+ + + +K+  +  V CGPGHG++ GS  K++ E+ V
Sbjct: 219 DDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENV 258

[Close]
BLAST of CSPI01G11270 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           +KD+TSLD+KN+H   +  KN+T D++ IIA   + N DGIH+   E + ILNT I   D
Sbjct: 151 IKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGD 210

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DCI V +  K  +I  V CGPGHGI+ GS  +Y  E++V
Sbjct: 211 DCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDV 249

[Close]
BLAST of CSPI01G11270 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-20
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +++DITS DSK +HI    CKN+T++ + I A + + N DGIH+  SE +NI+ ++I   
Sbjct: 161 LIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTG 220

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DDCI + +  K  VI ++TCGPGHGI+ GS  K+  E+ V
Sbjct: 221 DDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPV 260

[Close]
BLAST of CSPI01G11270 vs. TrEMBL
Match: A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A EN+ N DGIHVSSSE+INILNTNI   
Sbjct: 60  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSSEQINILNTNIATG 119

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KY+KEKEVV
Sbjct: 120 DDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYTKEKEVV 160

[Close]
BLAST of CSPI01G11270 vs. TrEMBL
Match: A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-32
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +V  ITSLDSKN+HI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   
Sbjct: 71  IVTGITSLDSKNFHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATG 130

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V ++NK+  ISDVTCGPGHGI+ GS  KY+KEKEVV
Sbjct: 131 DDCISVGDSNKQVAISDVTCGPGHGISIGSLGKYTKEKEVV 171

[Close]
BLAST of CSPI01G11270 vs. TrEMBL
Match: A0A0A0K6J6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKN+HI  LGCKN+T  HVTI A EN+ N DGIH+SSSE+INIL++ I+  
Sbjct: 84  IVKDITSLDSKNFHINLLGCKNVTFQHVTISAPENSPNTDGIHISSSEQINILDSKISTG 143

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDC+ V ++NK+  I++VTCGPGHGI+ GS  KY+KEK+VV
Sbjct: 144 DDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVV 184

[Close]
BLAST of CSPI01G11270 vs. TrEMBL
Match: A0A0A0K1X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037570 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-30
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           MVKDITSLDSKN+H   LGCKN+T  +VTIIA EN+ N DGIHVSSSE INI NT I+  
Sbjct: 1   MVKDITSLDSKNFHFNLLGCKNVTFQNVTIIAPENSPNTDGIHVSSSEVINIFNTRISTG 60

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DDCI V ++NK+  I++VTCGPGHGI+ GS  KY+KEKEV
Sbjct: 61  DDCISVGDSNKQITITNVTCGPGHGISIGSLGKYTKEKEV 100

[Close]
BLAST of CSPI01G11270 vs. TrEMBL
Match: A0A0A0KPH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 9.1e-30
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKN+HI  LGCKN+T +HVTI A EN+ N DGIH+SSSE+I ILNT I+  
Sbjct: 53  IVKDITSLDSKNFHINLLGCKNITFEHVTISAPENSPNTDGIHISSSEQIRILNTKISTG 112

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DDC+ V ++NK   I DVTCGPGHGI+ GS  KY+KEK V
Sbjct: 113 DDCVSVGDSNKDITIRDVTCGPGHGISIGSLGKYTKEKAV 152

[Close]
BLAST of CSPI01G11270 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-22
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           ++DI+S+D+KN+HI  LG KN+T++++ I+A E++ N DGIH+  S+ + ILN+ I+  D
Sbjct: 151 IRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGD 210

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DCI V +  K   +  VTCGPGHGI+ GS  +Y  E++V
Sbjct: 211 DCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDV 249

[Close]
BLAST of CSPI01G11270 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-22
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           ++DI+S+D+KN+HI  LG KN+T D+V +IA   + N DGIH+  SE + ILN+ I   D
Sbjct: 152 IRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGD 211

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DCI V +  K   + +V CGPGHGI+ GS  +Y  E++V
Sbjct: 212 DCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDV 250

[Close]
BLAST of CSPI01G11270 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-21
Identity = 47/99 (47.47%), Postives = 67/99 (67.68%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           ++ ITSLD+K++HI  +G KN+T + V IIA   + N DGIHV  S+ I I+N+ I+  D
Sbjct: 151 IRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGD 210

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DC+ V +  K  ++  VTCGPGHGI+ GS  +YS E+ V
Sbjct: 211 DCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENV 249

[Close]
BLAST of CSPI01G11270 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-20
Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           ++DI+S+D+KN+HI  +G KN+T D+V I+A   + N DGIH+  S  ++I+N+ I+  D
Sbjct: 152 IRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGD 211

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DC+ V +     ++ +V CGPGHGI+ GS  +Y  E++V
Sbjct: 212 DCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDV 250

[Close]
BLAST of CSPI01G11270 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-18
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 2   VKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIED 61
           +  ITS +SK +H+  L CKN+T+  + I A   +LN DGIH+  S  +N++   I   D
Sbjct: 202 INSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGD 261

Query: 62  DCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEV 101
           DC+ + +  +  ++ +V CGPGHGI+ GS  +Y  E+ V
Sbjct: 262 DCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPV 300

[Close]
BLAST of CSPI01G11270 vs. NCBI nr
Match: gi|778658546|ref|XP_011652893.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A EN+ N DGIHVSSSE+INILNTNI   
Sbjct: 158 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSSEQINILNTNIATG 217

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KY+KEKEVV
Sbjct: 218 DDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYTKEKEVV 258

[Close]
BLAST of CSPI01G11270 vs. NCBI nr
Match: gi|700209485|gb|KGN64581.1| (hypothetical protein Csa_1G066500 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A EN+ N DGIHVSSSE+INILNTNI   
Sbjct: 60  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPENSPNTDGIHVSSSEQINILNTNIATG 119

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KY+KEKEVV
Sbjct: 120 DDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYTKEKEVV 160

[Close]
BLAST of CSPI01G11270 vs. NCBI nr
Match: gi|659134134|ref|XP_008467043.1| (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-35
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   
Sbjct: 117 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATG 176

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEVV
Sbjct: 177 DDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVV 217

[Close]
BLAST of CSPI01G11270 vs. NCBI nr
Match: gi|659133875|ref|XP_008466933.1| (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-35
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A  N+ N DGIHVSSSE+INILNTNI   
Sbjct: 51  IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATG 110

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEVV
Sbjct: 111 DDCISVGDTNKQVVISDVTCGPGHGISIGSLGKYSKEKEVV 151

[Close]
BLAST of CSPI01G11270 vs. NCBI nr
Match: gi|659067859|ref|XP_008441641.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 7.9e-35
Identity = 78/101 (77.23%), Postives = 84/101 (83.17%), Query Frame = 1 

Query: 1   MVKDITSLDSKNYHIKFLGCKNLTIDHVTIIALENNLNIDGIHVSSSEEINILNTNITIE 60
           +VKDITSLDSKNYHI  LGCKNLT DHVTI A  ++ N DGIHVSSSEEINILNTNI   
Sbjct: 156 IVKDITSLDSKNYHINLLGCKNLTFDHVTITAPGDSPNTDGIHVSSSEEINILNTNIATG 215

Query: 61  DDCIFVKNTNKRTVISDVTCGPGHGINTGSWEKYSKEKEVV 102
           DDCI V +TNK+ VISDVTCGPGHGI+ GS  KYSKEKEVV
Sbjct: 216 DDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYSKEKEVV 256

The following BLAST results are available for this feature:
BLAST of CSPI01G11270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_OENOR3.7e-2447.52Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR2_PLAAC1.0e-2149.00Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_MEDSA3.8e-2145.00Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_BRANA2.5e-2047.47Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR_GOSHI3.2e-2045.00Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
BLAST of CSPI01G11270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX75_CUCSA1.1e-3577.23Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1[more]
A0A0A0KF15_CUCSA4.4e-3271.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1[more]
A0A0A0K6J6_CUCSA3.1e-3064.36Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037450 PE=3 SV=1[more]
A0A0A0K1X5_CUCSA5.3e-3068.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037570 PE=3 SV=1[more]
A0A0A0KPH7_CUCSA9.1e-3066.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266870 PE=3 SV=1[more]
BLAST of CSPI01G11270 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07820.12.1e-2246.46 Pectin lyase-like superfamily protein[more]
AT3G07840.14.8e-2247.47 Pectin lyase-like superfamily protein[more]
AT5G48140.14.0e-2147.47 Pectin lyase-like superfamily protein[more]
AT3G07830.11.2e-2042.42 Pectin lyase-like superfamily protein[more]
AT3G07850.13.2e-1838.38 Pectin lyase-like superfamily protein[more]
BLAST of CSPI01G11270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658546|ref|XP_011652893.1|1.6e-3577.23PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700209485|gb|KGN64581.1|1.6e-3577.23hypothetical protein Csa_1G066500 [Cucumis sativus][more]
gi|659134134|ref|XP_008467043.1|3.5e-3577.23PREDICTED: exopolygalacturonase-like, partial [Cucumis melo][more]
gi|659133875|ref|XP_008466933.1|3.5e-3577.23PREDICTED: polygalacturonase-like, partial [Cucumis melo][more]
gi|659067859|ref|XP_008441641.1|7.9e-3577.23PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004106 chorismate mutase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G11270.1CSPI01G11270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 2..99
score: 1.7
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..96
score: 5.66
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..96
score: 2.5
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..101
score: 1.7
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..101
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G11270Watermelon (97103) v2cpiwmbB001
CSPI01G11270Watermelon (97103) v2cpiwmbB016
CSPI01G11270Watermelon (97103) v2cpiwmbB030
CSPI01G11270Watermelon (97103) v2cpiwmbB032
CSPI01G11270Watermelon (97103) v2cpiwmbB061
CSPI01G11270Wax gourdcpiwgoB023
CSPI01G11270Wax gourdcpiwgoB044
CSPI01G11270Wax gourdcpiwgoB051
CSPI01G11270Wild cucumber (PI 183967)cpicpiB038
CSPI01G11270Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G11270Wild cucumber (PI 183967)cpicpiB050
CSPI01G11270Cucumber (Gy14) v1cgycpiB016
CSPI01G11270Cucumber (Gy14) v1cgycpiB090
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB009
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB219
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB324
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB395
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB508
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB656
CSPI01G11270Cucurbita maxima (Rimu)cmacpiB865
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB000
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB205
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB383
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB423
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB498
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB648
CSPI01G11270Cucurbita moschata (Rifu)cmocpiB845
CSPI01G11270Cucumber (Chinese Long) v2cpicuB000
CSPI01G11270Cucumber (Chinese Long) v2cpicuB044
CSPI01G11270Cucumber (Chinese Long) v2cpicuB050
CSPI01G11270Melon (DHL92) v3.5.1cpimeB024
CSPI01G11270Melon (DHL92) v3.5.1cpimeB040
CSPI01G11270Melon (DHL92) v3.5.1cpimeB086
CSPI01G11270Watermelon (Charleston Gray)cpiwcgB016
CSPI01G11270Watermelon (Charleston Gray)cpiwcgB036
CSPI01G11270Watermelon (Charleston Gray)cpiwcgB038
CSPI01G11270Watermelon (97103) v1cpiwmB010
CSPI01G11270Watermelon (97103) v1cpiwmB043
CSPI01G11270Watermelon (97103) v1cpiwmB072
CSPI01G11270Cucurbita pepo (Zucchini)cpecpiB235
CSPI01G11270Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G11270Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G11270Cucurbita pepo (Zucchini)cpecpiB771
CSPI01G11270Bottle gourd (USVL1VR-Ls)cpilsiB011
CSPI01G11270Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G11270Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G11270Melon (DHL92) v3.6.1cpimedB023
CSPI01G11270Melon (DHL92) v3.6.1cpimedB076
CSPI01G11270Cucumber (Gy14) v2cgybcpiB001
CSPI01G11270Cucumber (Gy14) v2cgybcpiB247
CSPI01G11270Cucumber (Gy14) v2cgybcpiB299
CSPI01G11270Silver-seed gourdcarcpiB0670
CSPI01G11270Silver-seed gourdcarcpiB0908
CSPI01G11270Silver-seed gourdcarcpiB0834
CSPI01G11270Silver-seed gourdcarcpiB0937
CSPI01G11270Silver-seed gourdcarcpiB0968
CSPI01G11270Silver-seed gourdcarcpiB1044
CSPI01G11270Cucumber (Chinese Long) v3cpicucB001
CSPI01G11270Cucumber (Chinese Long) v3cpicucB051
CSPI01G11270Cucumber (Chinese Long) v3cpicucB061