CSPI01G10870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPseudouridine synthase family protein
LocationChr1 : 6796479 .. 6800675 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAGGATAGCTATAGCATCATCTTGGTCTCATCAGCCCATCCCAGCTCAAAGACTCCAAAGACTCTATAGGATGCTGGCTTCCATGAATATAGCTCTGGTGGCCACCCATGGTTGCCGTACCCTCAGTGGTACATCACCATCCCTGCTCCGCACATTGGCAAGACCTCGTGCTAGTCTCAGTGCTGCCAGTTCCCGCGATTACTTTGCTCCTCGGCGTTCTTTGGGTTCGAAAAGCAGCGCATTTCCTTGTAAATCCTCAATAACAGATGTTACAGTCAAAACTGCAACTAATTCTGCAGAGAATGGGTGCCGCTAATTTTCTTTTTCTTATTATACCTTCTTGTTTATTAGTTTGATTGATACTTTTTTTTAATTATTTATTTATATATATATAAGACGTTTGATTGATAGTTTGAGAAGTTACACTGCTGTTTAGCTGTGTATTAATAGTATAAATGTGACAAAACGACTTACATGTTTAAATTGTTTGAATGTTTATTTAGTTGTTTGTGGGAAATTTCATAGTTGGTTAGTTATTCTAAGATTTCTGGTTTATTTAAATCGATGAATTGGGTTAGTATCTTGTTTTTCTTGTGGTAAAAGTTGCAGAGTAAAAGCTAAAGTGGAAGGAAGAAGAAAAAAAGAAAGTTTGTAATATATTTGGACTACAAACTTACAAGCACTGAAAATTTGCATTAACTGACTTACTTGTTCGTAGGTCCAATTTAGTTTGCCTTCTGCTGTCAGATAAAAGAGGAATAAAGGGGTTTCCTAGAACCATCAATTCACCACAACCCAAAAGTTTAAGTTGATGAGTTGGAATAGATATTAATTGAAAGGAAATGACACTATAAGTTTAAACGCAGAACTGACCTCCTACCTTGATAGTATGTTAAATCAAATCACCATTCAACTCAGAAGCTCAAGTTGAATGGTGATTGGATTTTTTTCATTCTCCCAACCCCTTGTATTGGCTTCCCATTTTATGATTCTTTTGGGATTGGGCTTGCTGAGACTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAGTAAACCTCCACGAGTTGAACATATGGTCGTTTTGGAAGCAGGACCTGTCATGGAATATATCTGTAAATCATTGAACCTTCCTCCTCTGTAAGTTATACTGCTTTTTGTTGTTCATAATAATTTATTCTGCAACAAAAGGTCAAGTCTAATTTGGATGAAGCAATGAATTCATGCTTTCATTGTTTGAAGGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCTAAAACTGCAACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCATCATTCTTGAAAGGGCGAAAATCTATCAAAGGGAAAACTGTGAGAGAGGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTCGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGAAATCAGCTATTTGTTTTTTATTTAATAAAAAACGATGTTCATAGTGGAATGATGCTTGTTGACATTTACAATTAATCAGGTGCTATGAAATTGATTGGAAATCAAGAATAATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTCTGTAGTTGAACACTTGAACTGTTAATCTCTGGCTTGAGAAATTACTTTCACTGCCTTCTATTTGTGGCGACTCTTGATTTTTGCATTCTACCTTCCTGTGACAGTCTGAAAATTTGATCAAGATTGACATAGGCACTAGGCATTTTGGTGGTATGGATAAATTTACTGATCTTTCAGTAACATGCCACCTCTCAAGTAATAAAATTTGATGATGTAAACAATAAACCCTAATAGAGAATGCCACCATTCATTTGCATCATTTTCTTTTTGTTAATAAAACAATTTATTTACATAGTACCATCTAGCTGAACATTCACTTCTTAGGCTTTAAGTAAGACAAATATTCTGTCAGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTGGGATTAACATCTCCCTTGTGGACTACCCATCAGATCGACAACTGCACTGAAGGCTGGTAATTATGTTTCTTATATATATTTCTATGTCTAATTCTAATTCCTCTATTCAAAAGACTTGTTTTCACTCATTTACACTTTTGCAGCGTCATTTTTGCTAGGACAAAAGAATATTGCTCCATCTTCCATGGTAAAATCAGAGTAAGTTTCACGGTCTTATTTCTTGAGTTTGACCATTGCGGTTAGCTTACTTTACTAACTGGTAAAATTATTTCCAAGACAATGCTTAAAAGTGACAGCTCTATTCCCTTAATGTAAAGTAAAACTATCTTTTTAGCCATATTTAAATCTCTGTTTATTTTCTCCTTTTCCATTCTTTATTTGTGTTGTAATTTGGATATGGTGTAGTAAAATATTCCTGCCAAATCTTCATTGTGCTCACTATACTGGTAAAATGTAAAAATGGTCGTATTATTCCCTCTCTAAATATATTCTAATCTGTATGATAAAGATGTCTATTAAGGGAACAAGAATGTAGGCTAGTCCTTTGACTTTGCAGTTGAGATTGTCATTTTTAAGCACTTCACAACAAGGGGAGTTAAAATGAATTTTACTTGGCGATAATTCATGATAAAAAAGCTGCACGAGCTGATGAGTTATTTTATTTTCAGTGGCATTGGTAGACTTTCCATTAATCATCATACACATTTGAAATTTACTCGTTAAGTTATTTTTCTTGATGTTTTTCATCTCTTAATTTGATAGTAATGCTTTACAATTCTTCTTAATAGGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTTCTGCTGCTCCCGTCCCAATGGGAATAATAACACACTACATGCGGCCAATTAATATAGCTCCTAGACTTGTTTCAAAAGGTAAGTCTCCCGATCAAGCATTCAAATAATAATAGGCTATTGCCTTGAACAATTTGTTGCAATTTGATATGTTGAGGAACATATGCATACCGTTTAATTATTATTTTGCAGCCACAAACTCAAGCACTTAAAAAACTAATCTTAGCTTTTCTGCCAACTAATTATTAATATACAAATGGAATGGTCATCCCAGTCATATTAACGTTTTAACTCCCACCGAACCCGGCACCTACAATCTCAACCCCCAAACGTATCATGTATCCATAATAAGTATTAGATAGTATGTAGTTCCATTCAAAACCAATTGTCAATGAGAGGAGTCCCATCTATTTTATAAGGAGTGTGAGGTCCTTTGATTTTATCAATGTGGGATTCTTCTGGGTTCACCATTTCTTTTTTATTAGACCGAATACCCGTTTGGGTTTTTGAGGCTCTTATACCATATTAGATGATGTGAGATTTCATCTCAAAACCAATTGGCTACGAGAGGAGTAGTTCATCTACCTTATAAGAAGTGTGAGTTCCTTTGATCTTTCCCATGTGAGATTTCCAACGATAAAGCGTGCTTGGCAGAAGTTCTCTAGGTCGCTTTAAACTTTTTCTGCTTGCAGATTGTATTGATGGATGGATCATTTGTCAGCTTGAGGTGTTGGAATGCAGAGAGGTTTCATGGCCGGATGCGGATATTGAAGCAAAATACCGCGTTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCTTATGAATGTAGAATAAACCTCTTGACTGGTCGGACACATCAGGTTCTTAGTGTAGTCATTCTGTTTTGGTAGCTATCTATATAATTTTGAAACCATCTTCACAAATACTGCAGGCAGAGATGGGACATTGAAAACAGTTCTTAAAATGAATATGCTGTTTCCTCATATGCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCGTTGGTTGGTGATTCCATGTATATGCCTGCTGTGGTTGCAGAGATGGGTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACCAACGAAGAAGATAAAGAAACTGCTGTGGCGGAGTGGAGTGCTCTTCATGGAAAAGAACCAGCCATTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTCAAGGGAGCACAGTTACAATGCTGGTACTCCATGGTGGAGGCAGGAACAGTTGTAG

mRNA sequence

ATGCTGGCTTCCATGAATATAGCTCTGGTGGCCACCCATGGTTGCCGTACCCTCAGTGGTACATCACCATCCCTGCTCCGCACATTGGCAAGACCTCGTGCTAGTCTCAGTGCTGCCAGTTCCCGCGATTACTTTGCTCCTCGGCGTTCTTTGGGTTCGAAAAGCAGCGCATTTCCTTGTAAATCCTCAATAACAGATGTTACAGTCAAAACTGCAACTAATTCTGCAGAGAATGGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAGTAAACCTCCACGAGTTGAACATATGGTCGTTTTGGAAGCAGGACCTGTCATGGAATATATCTGTAAATCATTGAACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCTAAAACTGCAACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCATCATTCTTGAAAGGGCGAAAATCTATCAAAGGGAAAACTGTGAGAGAGGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTCGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATAATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTGGGATTAACATCTCCCTTGTGGACTACCCATCAGATCGACAACTGCACTGAAGGCTGCGTCATTTTTGCTAGGACAAAAGAATATTGCTCCATCTTCCATGGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTTCTGCTGCTCCCGTCCCAATGGGAATAATAACACACTACATGCGGCCAATTAATATAGCTCCTAGACTTGTTTCAAAAGATTGTATTGATGGATGGATCATTTGTCAGCTTGAGGTGTTGGAATGCAGAGAGGTTTCATGGCCGGATGCGGATATTGAAGCAAAATACCGCGTTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCTTATGAATGTAGAATAAACCTCTTGACTGGTCGGACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCGTTGGTTGGTGATTCCATGTATATGCCTGCTGTGGTTGCAGAGATGGGTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACCAACGAAGAAGATAAAGAAACTGCTGTGGCGGAGTGGAGTGCTCTTCATGGAAAAGAACCAGCCATTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTCAAGGGAGCACAGTTACAATGCTGGTACTCCATGGTGGAGGCAGGAACAGTTGTAG

Coding sequence (CDS)

ATGCTGGCTTCCATGAATATAGCTCTGGTGGCCACCCATGGTTGCCGTACCCTCAGTGGTACATCACCATCCCTGCTCCGCACATTGGCAAGACCTCGTGCTAGTCTCAGTGCTGCCAGTTCCCGCGATTACTTTGCTCCTCGGCGTTCTTTGGGTTCGAAAAGCAGCGCATTTCCTTGTAAATCCTCAATAACAGATGTTACAGTCAAAACTGCAACTAATTCTGCAGAGAATGGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAGTAAACCTCCACGAGTTGAACATATGGTCGTTTTGGAAGCAGGACCTGTCATGGAATATATCTGTAAATCATTGAACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCTAAAACTGCAACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCATCATTCTTGAAAGGGCGAAAATCTATCAAAGGGAAAACTGTGAGAGAGGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTCGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATAATCGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTGGGATTAACATCTCCCTTGTGGACTACCCATCAGATCGACAACTGCACTGAAGGCTGCGTCATTTTTGCTAGGACAAAAGAATATTGCTCCATCTTCCATGGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTTCTGCTGCTCCCGTCCCAATGGGAATAATAACACACTACATGCGGCCAATTAATATAGCTCCTAGACTTGTTTCAAAAGATTGTATTGATGGATGGATCATTTGTCAGCTTGAGGTGTTGGAATGCAGAGAGGTTTCATGGCCGGATGCGGATATTGAAGCAAAATACCGCGTTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCTTATGAATGTAGAATAAACCTCTTGACTGGTCGGACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCGTTGGTTGGTGATTCCATGTATATGCCTGCTGTGGTTGCAGAGATGGGTAGTCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACCAACGAAGAAGATAAAGAAACTGCTGTGGCGGAGTGGAGTGCTCTTCATGGAAAAGAACCAGCCATTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTCAAGGGAGCACAGTTACAATGCTGGTACTCCATGGTGGAGGCAGGAACAGTTGTAG
Homology
[Close]
BLAST of CSPI01G10870 vs. Swiss-Prot
Match: PUS6_ARATH (RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 1.3e-180
Identity = 319/471 (67.73%), Postives = 374/471 (79.41%), Query Frame = 1 

Query: 12  THGCRTLSGTSP-SLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI-TDVTV 71
           T G R L  T+P SLLRTLA  R +     S  + +PR    S    F C S + TD   
Sbjct: 7   TGGYRNL--TAPVSLLRTLASTRVTTPLFRSNKH-SPR--FISSPKRFTCLSLLKTDSQN 66

Query: 72  KTATNSAEN-GYPQYHRLLPCPSFSKPPRVEHMVVLEAGP-VMEYICKSLNLPPLYVADL 131
           +T  +S+ N GY +Y+RL+PCP+++ PPR+EHMVVLE    V E+I K L+LPPLYVADL
Sbjct: 67  QTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADL 126

Query: 132 IHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVD 191
           I FGAV+YALVCP+PP TATPE+I LF++ T PS LK R SIKGKTVREAQKTFR+TH +
Sbjct: 127 IRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTN 186

Query: 192 EFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 251
           ++ E GTYLRVHVHPKR PRCYEIDWKSRI+AVT+SYV+LDKPAGT+VGGTTDNIEESCA
Sbjct: 187 QYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCA 246

Query: 252 TFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPV 311
           TFA+RAL L  PL TTHQIDNCTEGCV+FARTKEYCS+FH KIR K+V KLY AL+AAP+
Sbjct: 247 TFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPL 306

Query: 312 PMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPS 371
           P+GII+HYMRP N+APRLV++D I GW +CQLEVLEC+++ WPDA  E K+ +EDCGW S
Sbjct: 307 PIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTS 366

Query: 372 KKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYT 431
           K+ AYEC INLLTG+THQIRAQLA CGAPLVGDSMYMPA +AEMG+P  NP+GK KK YT
Sbjct: 367 KEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYT 426

Query: 432 NEED-KETAVAEWSALHGKEPAIAIGLQAYEISW--DSREHSYNAGTPWWR 476
            EE+ KETAVAEW   HGKEP + IGLQA +ISW  D  EH Y AGTPWWR
Sbjct: 427 MEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472

[Close]
BLAST of CSPI01G10870 vs. Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 6.7e-161
Identity = 275/464 (59.27%), Postives = 336/464 (72.41%), Query Frame = 1 

Query: 17  TLSGTSPSLLRTLARPRASLSAA-SSRDYFAPRRSLGSKSSAFPCKSSITDVTVKTATNS 76
           +L+   P L     +P   L  A SS      R      S A P  ++    +  T    
Sbjct: 7   SLASLLPQLWHRPVQPPPFLHRALSSSSPLLRRHRAALHSPAAPLSAAAVSTSAATVEAP 66

Query: 77  AENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYY 136
           A   YP Y RLLPCP    PPR+EH+V  E    +++I +SL LPPLYVADLI FGAVYY
Sbjct: 67  ATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVYY 126

Query: 137 ALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTY 196
           ALV PQPP  A PE +R+F++ TEPS L  RKSIKGKTVREAQKTFR+T  ++ +E GTY
Sbjct: 127 ALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTY 186

Query: 197 LRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALG 256
           LRVHVHPKRFPRCYEIDWKSR+IAVT++YVVLDKPA TSVGG TDNIEESC  F +RALG
Sbjct: 187 LRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALG 246

Query: 257 LTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHY 316
           L +PL TTHQIDNC+EGCV+ ++TKE+CS+FHG IREK+V K YLAL+ APV  GIITHY
Sbjct: 247 LETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITHY 306

Query: 317 MRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPSKKKAYECR 376
           MRPIN APRLVS+D I GW +CQ+E+L+C++V WP + I   ++V++CGWP ++ AYEC+
Sbjct: 307 MRPINRAPRLVSEDHIKGWHVCQMEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYECK 366

Query: 377 INLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTNEEDKETA 436
           INLLTG+THQIRAQLA  G P+VGDS YM A +A + +P +NPFG+  + Y +E++K  A
Sbjct: 367 INLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIVNPSINPFGRWGQNYDSEDEKAAA 426

Query: 437 VAEWSALHGKEPAIAIGLQAYEISWD--SREHSYNAGTPWWRQE 478
           V  W + HGKEP   IGLQA EISWD     HSY AG PWWRQ+
Sbjct: 427 VEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAGVPWWRQD 470

[Close]
BLAST of CSPI01G10870 vs. Swiss-Prot
Match: RLUD_XANAC (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-07
Identity = 60/229 (26.20%), Postives = 92/229 (40.17%), Query Frame = 1 

Query: 190 VEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV---GGTTDNIEESC 249
           V+V    + H  P+  P          ++   E  +V+DKPAG  V    G  D    + 
Sbjct: 73  VQVVLETQTHAAPQDIPLS--------VLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNA 132

Query: 250 ATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAP 309
             F   AL         H++D  T G ++ ART +  +    ++  ++V + YLA+    
Sbjct: 133 LLFRDPALASVPRAGVVHRLDKDTSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGA 192

Query: 310 VPMGIITHYMRPINIAPRLVSKDCI--DGWIICQLEVLECREVSWPDADIEAKYRVEDCG 369
           +  G   +   PI+  PR   K  +  DG                   D    YR+ +  
Sbjct: 193 LVSGGTAN--APIDRHPRDRLKMAVRDDG------------------RDAVTHYRLRERF 252

Query: 370 WPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGS 414
                 A EC   L TGRTHQIR  +A   +P+VGD +Y  A+    G+
Sbjct: 253 --RAHTALEC--RLETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGA 269

[Close]
BLAST of CSPI01G10870 vs. Swiss-Prot
Match: Y292_MYCPN (Uncharacterized RNA pseudouridine synthase MG209 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_292 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-06
Identity = 61/246 (24.80%), Postives = 100/246 (40.65%), Query Frame = 1 

Query: 165 GRKSIKGKTVRE----AQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAV 224
           G  S+ GK + +     Q   R+ HV+   E+   + V V P  FP    +D    I+  
Sbjct: 35  GLVSVNGKKITKNGWLVQPEDRV-HVNWSEELFEKVPVEVQPYDFP----LD----ILYE 94

Query: 225 TESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTK 284
            E  +V++KP G     T+ N  ES    A        P++  H++D  T G ++ A+ +
Sbjct: 95  DEQIMVVNKPNGLISHPTSFNESESLLGAALFHCN-HQPVFLVHRLDRDTSGVIMLAKNQ 154

Query: 285 EYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLE 344
                   +++++ + + YLAL   P+                     D + G I   LE
Sbjct: 155 SSLLHLQKQLQQRVMKRYYLALVHFPL---------------------DSLSGTISAPLE 214

Query: 345 VLECREVSWPDADIEAKYRVEDCGWP---SKKKAYECRINLLTGRTHQIRAQLADCGAPL 404
            +   +V W   +   K +     +      +KA   +  LLTGRTHQIR  L     P+
Sbjct: 215 RVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPV 249

[Close]
BLAST of CSPI01G10870 vs. Swiss-Prot
Match: RLUD_XANCP (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=rluD PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-06
Identity = 58/229 (25.33%), Postives = 89/229 (38.86%), Query Frame = 1 

Query: 190 VEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSV---GGTTDNIEESC 249
           V+V    + H  P+  P          ++   +  +V+DKPAG  V    G  D    + 
Sbjct: 73  VQVVLETQTHAAPQDIPL--------NVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNA 132

Query: 250 ATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAP 309
             F    L         H++D  T G ++ ART +  +    ++  + V + YLA+    
Sbjct: 133 LLFRDPNLAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGA 192

Query: 310 VPMGIITHYMRPINIAPRLVSKDCI--DGWIICQLEVLECREVSWPDADIEAKYRVEDCG 369
           +  G       PI+  PR   K  +  DG                   D    YR+ +  
Sbjct: 193 LVSGGTAD--APIDRHPRDRLKMAVRDDG------------------RDAVTHYRLRERF 252

Query: 370 WPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGS 414
                 A EC   L TGRTHQIR  +A   +P+VGD +Y  A+    G+
Sbjct: 253 --RAHTALEC--RLETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGA 269

[Close]
BLAST of CSPI01G10870 vs. TrEMBL
Match: A0A0A0LX47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064140 PE=4 SV=1)

HSP 1 Score: 984.6 bits (2544), Expect = 4.4e-284
Identity = 477/479 (99.58%), Postives = 478/479 (99.79%), Query Frame = 1 

Query: 1   MLASMNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60
           MLASMNIALVATHGCRTLS TSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC
Sbjct: 1   MLASMNIALVATHGCRTLSSTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60

Query: 61  KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP 120
           KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP
Sbjct: 61  KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP 120

Query: 121 PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 180
           PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT
Sbjct: 121 PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 180

Query: 181 FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240
           FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD
Sbjct: 181 FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240

Query: 241 NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL 300
           NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL
Sbjct: 241 NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL 300

Query: 301 ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV 360
           ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV
Sbjct: 301 ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV 360

Query: 361 EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG 420
           EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG
Sbjct: 361 EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG 420

Query: 421 KCKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KCKKEYTNEEDKETAVAEWSALHGKEPA+AIGLQAYEISWDSREHSYNAGTPWWRQEQL
Sbjct: 421 KCKKEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQEQL 479

[Close]
BLAST of CSPI01G10870 vs. TrEMBL
Match: A0A0A0LU97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063630 PE=4 SV=1)

HSP 1 Score: 818.5 bits (2113), Expect = 4.2e-234
Identity = 395/476 (82.98%), Postives = 430/476 (90.34%), Query Frame = 1 

Query: 5   MNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI 64
           M+++LVA HGC  LS TS +L R +AR RA+LSA+ S   FA  RS    S AFPC+SS 
Sbjct: 1   MDVSLVAAHGCPGLS-TSLNLPREVARTRANLSASISSTCFAALRSFSFNSKAFPCESST 60

Query: 65  TDVTV-KTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY 124
           TDV V +TATNSAENGYPQYHRLLPC SF+ PPRVEH+VVLE GPVMEYI KSL+LPP+Y
Sbjct: 61  TDVNVTQTATNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMY 120

Query: 125 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 184
           VADLIHFGAVYYALVCPQPP TA+ E+IRLFKKFT+PSFL GRKSIKGKT+REAQKTFRI
Sbjct: 121 VADLIHFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRI 180

Query: 185 THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 244
           TH+DEFVEVGTYLRV+VHPKRFPRCYE+DWKSRIIAVT+SYVVLDKPAGTSVGGTT+NIE
Sbjct: 181 THIDEFVEVGTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIE 240

Query: 245 ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS 304
           E+C TFATRALGLTSPLWTTHQIDNCTEGCVI ARTKEYCSIFH KIREKKV KLYLAL 
Sbjct: 241 ETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALV 300

Query: 305 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC 364
           A P+P GI+THYMRP N+APRLVS+DCIDGW +CQLEVLECREVSWPDADIEAKY +EDC
Sbjct: 301 AVPLPKGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDC 360

Query: 365 GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 424
           GWPSKKKA+EC+INLLTGRTHQIRAQLAD GAPLVGDS+YMPA VAEM +PGLNPFGKCK
Sbjct: 361 GWPSKKKAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCK 420

Query: 425 KEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KEYT+EEDKE AVAEW ALHGKEPA+AIGLQAYEISWDS EH YNAGTPWWRQEQL
Sbjct: 421 KEYTSEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAGTPWWRQEQL 475

[Close]
BLAST of CSPI01G10870 vs. TrEMBL
Match: M5WN99_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020640mg PE=4 SV=1)

HSP 1 Score: 698.4 bits (1801), Expect = 6.3e-198
Identity = 339/478 (70.92%), Postives = 395/478 (82.64%), Query Frame = 1 

Query: 2   LASMNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSS----A 61
           + S++   +  +GCR+ S    +L+RTLA    +LS  ++ +Y   + +  S+SS     
Sbjct: 1   MGSVSFTSMLANGCRSFSAPV-ALVRTLALTHVALSEHAN-NYKHVKVACFSRSSKKRTT 60

Query: 62  FPCKSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSL 121
           F C+S    VT  T+ +S  NGYP+Y RLLPCPS + PPRVEH+VV E GPV+EYICK+L
Sbjct: 61  FACESLKQGVTQPTSVSSV-NGYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTL 120

Query: 122 NLPPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREA 181
           +LPP +VADLIHFGAVYYALVCP+PP TATPEQ+R+FK+ T PS LK R SIKGKTVREA
Sbjct: 121 DLPPQFVADLIHFGAVYYALVCPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREA 180

Query: 182 QKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGG 241
           QKTFRITH DEFVE GTYLRVHVHPKRFPRCY+IDWKSRIIAV+E +VVLDKPAGT+VGG
Sbjct: 181 QKTFRITHADEFVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGG 240

Query: 242 TTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMK 301
           TTDNIEESCATFATRALGLT+PL TTHQIDNCTEGCV+ ARTKEYCS+FHGKIREKKV K
Sbjct: 241 TTDNIEESCATFATRALGLTTPLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKK 300

Query: 302 LYLALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAK 361
           LYLAL+AAPVP GIITHYMRPIN+APRL+S+D I+ W +CQLEV+EC+E+ WP+A +E K
Sbjct: 301 LYLALAAAPVPTGIITHYMRPINVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEK 360

Query: 362 YRVEDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLN 421
           Y VEDCGWPSK  AYEC+INLLTGRTHQ+RAQLA CGAP+VGDSMYMPA VAEM SPGLN
Sbjct: 361 YCVEDCGWPSKDYAYECKINLLTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLN 420

Query: 422 PFGKCKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWR 476
           PFG+ KK YT E DKETAVAEW A HGKEP +AIGLQA +ISWD  +H++ A  PWWR
Sbjct: 421 PFGQYKKHYTTENDKETAVAEWIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475

[Close]
BLAST of CSPI01G10870 vs. TrEMBL
Match: B9RXP6_RICCO (Ribosomal pseudouridine synthase, putative OS=Ricinus communis GN=RCOM_0905350 PE=4 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 7.7e-196
Identity = 336/474 (70.89%), Postives = 390/474 (82.28%), Query Frame = 1 

Query: 2   LASMNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCK 61
           ++S+++A +   G R+   T  ++LRTLA   A             R SL S    F C+
Sbjct: 1   MSSLSLASIFAGGYRSFV-TPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCE 60

Query: 62  SSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPP 121
           SS  +V   T T S  NG   Y RLLPCPS+++PPR+EH+VVLE GPV++YICK+L+LPP
Sbjct: 61  SSKPEVAYTTNT-SCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPP 120

Query: 122 LYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTF 181
           L+VADLI FGAV+YALVCP+PP TATPEQIRLF+KFT PS LK R SIKGKTVREAQKTF
Sbjct: 121 LFVADLIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTF 180

Query: 182 RITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDN 241
           RITHVD+++E GTYLRVHVHPKRFPRCY+IDWKSRIIAVT+ YVVLDKPAGTSVGGT DN
Sbjct: 181 RITHVDQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADN 240

Query: 242 IEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLA 301
           IEESCATFATRALGLT+PL TTHQIDNCTEGCV+ AR+KEYCS+FHGKIREKKV KLYLA
Sbjct: 241 IEESCATFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLA 300

Query: 302 LSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVE 361
           L+A+PVP+G+I +YMRP+NIAPRL+S++ ++GW +CQLEVLECR+V WPDA IE KY VE
Sbjct: 301 LAASPVPVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVE 360

Query: 362 DCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGK 421
           DCGWPSK  AYEC+INLLTGRTHQIRAQLA  GAPLVGDSMYMPA VAEM +PGLNPFGK
Sbjct: 361 DCGWPSKDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGK 420

Query: 422 CKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWR 476
            +K+YTNE D+  AVAEW A HGKEP +AIGLQA EISWD  +H Y AG+PWWR
Sbjct: 421 HRKQYTNESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472

[Close]
BLAST of CSPI01G10870 vs. TrEMBL
Match: B9H1E8_POPTR (Pseudouridine synthase family protein OS=Populus trichocarpa GN=POPTR_0004s01870g PE=4 SV=2)

HSP 1 Score: 683.3 bits (1762), Expect = 2.1e-193
Identity = 333/475 (70.11%), Postives = 391/475 (82.32%), Query Frame = 1 

Query: 2   LASMNIALVATHGCRTLSGTSPSLLRTLARPRA-SLSAASSRDYFAPRRSLGSKSSAFPC 61
           +AS+N+A + ++  R+ S    +LLRTLA  RA SL+  +       +R L        C
Sbjct: 1   MASLNLASIFSYSYRSFSAPV-TLLRTLAFTRAYSLNKKALVWCSLSKRKLS-------C 60

Query: 62  KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP 121
           +S   D+   TAT+S  NGYP+Y RLLPCPS + PPR+EH+VV E GPV++YICK+L+LP
Sbjct: 61  ESLKQDIACTTATSSV-NGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLP 120

Query: 122 PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 181
           PL+VADLIHFGAV+YALVCPQPP+TATPEQIR+F++ T PS LK R SIKGKTVREAQKT
Sbjct: 121 PLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKT 180

Query: 182 FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 241
           FRITHVD+F+E G YLRVHVHPKRFPRCY+IDWKSRII VTES+VVLDKPAGTSVGGTTD
Sbjct: 181 FRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTD 240

Query: 242 NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL 301
           NIEESCATFATRALGLT+PL TTHQIDNCTEGCV+ ART+E CS+FHGKIREK V KLY+
Sbjct: 241 NIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYI 300

Query: 302 ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV 361
           AL+A+PVP+G++ HYMRPIN+APRLVS++ I GW +CQLEV+EC+ V WPDA +E KY V
Sbjct: 301 ALAASPVPIGVVNHYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCV 360

Query: 362 EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG 421
           +DCGWPSK  AYEC+INLLTGRTHQIRAQLA  GAPLVGDSMYMPA VAEM SPG NPFG
Sbjct: 361 QDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFG 420

Query: 422 KCKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWR 476
           K KK+YT+E+DK  AV EW   HGKEP +AIGLQA +ISWD  +H YNAG+PWWR
Sbjct: 421 KYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466

[Close]
BLAST of CSPI01G10870 vs. TAIR10
Match: AT4G21770.1 (AT4G21770.1 Pseudouridine synthase family protein)

HSP 1 Score: 634.0 bits (1634), Expect = 7.4e-182
Identity = 319/471 (67.73%), Postives = 374/471 (79.41%), Query Frame = 1 

Query: 12  THGCRTLSGTSP-SLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI-TDVTV 71
           T G R L  T+P SLLRTLA  R +     S  + +PR    S    F C S + TD   
Sbjct: 7   TGGYRNL--TAPVSLLRTLASTRVTTPLFRSNKH-SPR--FISSPKRFTCLSLLKTDSQN 66

Query: 72  KTATNSAEN-GYPQYHRLLPCPSFSKPPRVEHMVVLEAGP-VMEYICKSLNLPPLYVADL 131
           +T  +S+ N GY +Y+RL+PCP+++ PPR+EHMVVLE    V E+I K L+LPPLYVADL
Sbjct: 67  QTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADL 126

Query: 132 IHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVD 191
           I FGAV+YALVCP+PP TATPE+I LF++ T PS LK R SIKGKTVREAQKTFR+TH +
Sbjct: 127 IRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTN 186

Query: 192 EFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCA 251
           ++ E GTYLRVHVHPKR PRCYEIDWKSRI+AVT+SYV+LDKPAGT+VGGTTDNIEESCA
Sbjct: 187 QYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCA 246

Query: 252 TFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPV 311
           TFA+RAL L  PL TTHQIDNCTEGCV+FARTKEYCS+FH KIR K+V KLY AL+AAP+
Sbjct: 247 TFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRALAAAPL 306

Query: 312 PMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPS 371
           P+GII+HYMRP N+APRLV++D I GW +CQLEVLEC+++ WPDA  E K+ +EDCGW S
Sbjct: 307 PIGIISHYMRPKNMAPRLVAEDSIQGWHLCQLEVLECKKIPWPDAATEKKHDIEDCGWTS 366

Query: 372 KKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYT 431
           K+ AYEC INLLTG+THQIRAQLA CGAPLVGDSMYMPA +AEMG+P  NP+GK KK YT
Sbjct: 367 KEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMPAAIAEMGNPDTNPYGKAKKHYT 426

Query: 432 NEED-KETAVAEWSALHGKEPAIAIGLQAYEISW--DSREHSYNAGTPWWR 476
            EE+ KETAVAEW   HGKEP + IGLQA +ISW  D  EH Y AGTPWWR
Sbjct: 427 MEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 472

[Close]
BLAST of CSPI01G10870 vs. NCBI nr
Match: gi|778658457|ref|XP_004151517.2| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 984.6 bits (2544), Expect = 6.3e-284
Identity = 477/479 (99.58%), Postives = 478/479 (99.79%), Query Frame = 1 

Query: 1   MLASMNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60
           MLASMNIALVATHGCRTLS TSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC
Sbjct: 1   MLASMNIALVATHGCRTLSSTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60

Query: 61  KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP 120
           KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP
Sbjct: 61  KSSITDVTVKTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLP 120

Query: 121 PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 180
           PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT
Sbjct: 121 PLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 180

Query: 181 FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240
           FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD
Sbjct: 181 FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240

Query: 241 NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL 300
           NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL
Sbjct: 241 NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYL 300

Query: 301 ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV 360
           ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV
Sbjct: 301 ALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRV 360

Query: 361 EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG 420
           EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG
Sbjct: 361 EDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFG 420

Query: 421 KCKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KCKKEYTNEEDKETAVAEWSALHGKEPA+AIGLQAYEISWDSREHSYNAGTPWWRQEQL
Sbjct: 421 KCKKEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQEQL 479

[Close]
BLAST of CSPI01G10870 vs. NCBI nr
Match: gi|659067778|ref|XP_008441255.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 916.4 bits (2367), Expect = 2.1e-263
Identity = 450/480 (93.75%), Postives = 458/480 (95.42%), Query Frame = 1 

Query: 1   MLASMNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPC 60
           MLASMNIALVATHGCR L  TS SLLRTLAR RAS SAAS  DYFAPRRS  S SSAFPC
Sbjct: 1   MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 61  KSSITDVTV-KTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNL 120
           KSSITDVTV KTAT+SAENGYPQYHRLLPCPSFSK PRVEHMVVLEAGPVMEYICKSL+L
Sbjct: 61  KSSITDVTVTKTATDSAENGYPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEYICKSLDL 120

Query: 121 PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 180
           PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK
Sbjct: 121 PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 180

Query: 181 TFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT 240
           TFRITHVDEFVEVGTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAGTSVGGTT
Sbjct: 181 TFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTT 240

Query: 241 DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLY 300
           DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVI ARTKEYCSIFH KIREK+VMK Y
Sbjct: 241 DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHY 300

Query: 301 LALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYR 360
           LALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWI+CQLEVLECREVSWPD DIEAKY 
Sbjct: 301 LALSAAPVPMGIITHYMRPINIAPRLVSKDCIDGWILCQLEVLECREVSWPDVDIEAKYC 360

Query: 361 VEDCGWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPF 420
            ED GWPSKKKAYEC+INLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPF
Sbjct: 361 FEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPF 420

Query: 421 GKCKKEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           GKCKKEYT+EEDKETAVAEW ALHGKEPA+AIGLQAYEISWDSREH YNAGTPWWRQEQL
Sbjct: 421 GKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWRQEQL 480

[Close]
BLAST of CSPI01G10870 vs. NCBI nr
Match: gi|778658473|ref|XP_011652789.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 908.7 bits (2347), Expect = 4.4e-261
Identity = 444/476 (93.28%), Postives = 454/476 (95.38%), Query Frame = 1 

Query: 5   MNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI 64
           M+++LVA HGC  LS TS +L R +AR RA+LSA+ S   FA  RS    S AFPC+SS 
Sbjct: 1   MDVSLVAAHGCPGLS-TSLNLPREVARTRANLSASISSTCFAALRSFSFNSKAFPCESST 60

Query: 65  TDVTV-KTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY 124
           TDV V +TATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY
Sbjct: 61  TDVNVTQTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY 120

Query: 125 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 184
           VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI
Sbjct: 121 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 180

Query: 185 THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 244
           THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181 THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 240

Query: 245 ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS 304
           ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS
Sbjct: 241 ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS 300

Query: 305 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC 364
           AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC
Sbjct: 301 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC 360

Query: 365 GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 424
           GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK
Sbjct: 361 GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 420

Query: 425 KEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KEYTNEEDKETAVAEWSALHGKEPA+AIGLQAYEISWDSREHSYNAGTPWWRQEQL
Sbjct: 421 KEYTNEEDKETAVAEWSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQEQL 475

[Close]
BLAST of CSPI01G10870 vs. NCBI nr
Match: gi|659067784|ref|XP_008441277.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 875.5 bits (2261), Expect = 4.1e-251
Identity = 430/476 (90.34%), Postives = 445/476 (93.49%), Query Frame = 1 

Query: 5   MNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI 64
           M+++LVA HGCR LS TS +LLR +AR RA+LSA  S   F  RRS    SSAFP +SS 
Sbjct: 1   MDVSLVAAHGCRGLS-TSLTLLREVARTRANLSAPISTTCFTARRSFSLNSSAFPGESST 60

Query: 65  TDVTV-KTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY 124
           TDV V +TATNSAENGYPQYHRLLPCPSFSK PRVEHMVVLEAGPVMEYICKSL+LPPLY
Sbjct: 61  TDVNVTQTATNSAENGYPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEYICKSLDLPPLY 120

Query: 125 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 184
           VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI
Sbjct: 121 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 180

Query: 185 THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 244
           THVDEFVEVGTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE
Sbjct: 181 THVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 240

Query: 245 ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS 304
           ESCATFATRALGLTSPLWTTHQIDNCTEGCVI ARTKEYCSIFH KIREK+VMK YLALS
Sbjct: 241 ESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHYLALS 300

Query: 305 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC 364
           AAPVPMGIITHYMRPINIAPRLVSKDCIDGWI+CQLEVLECREVSWPD DIEAKY  ED 
Sbjct: 301 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWILCQLEVLECREVSWPDVDIEAKYCFEDG 360

Query: 365 GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 424
           GWPSKKKAYEC+INLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK
Sbjct: 361 GWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 420

Query: 425 KEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KEYT+EEDKETAVAEW ALHGKEPA+AIGLQAYEISWDSREH YNAGTPWWRQEQL
Sbjct: 421 KEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWRQEQL 475

[Close]
BLAST of CSPI01G10870 vs. NCBI nr
Match: gi|659067780|ref|XP_008441263.1| (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 825.5 bits (2131), Expect = 4.9e-236
Identity = 398/476 (83.61%), Postives = 434/476 (91.18%), Query Frame = 1 

Query: 5   MNIALVATHGCRTLSGTSPSLLRTLARPRASLSAASSRDYFAPRRSLGSKSSAFPCKSSI 64
           M+++LVA HGCR LS TS +LLR +AR RA+LSA  S   F  RRS    SSAFP +SS 
Sbjct: 1   MDVSLVAAHGCRGLS-TSLTLLREVARTRANLSAPISTTCFTARRSFSLNSSAFPGESST 60

Query: 65  TDVTV-KTATNSAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLY 124
           TDV V +TATNSAENGYP+YHRLLPC SF+ PPRVEH+VVLE GPVMEYI KSL+LPP+Y
Sbjct: 61  TDVNVTQTATNSAENGYPEYHRLLPCTSFNAPPRVEHLVVLEGGPVMEYISKSLDLPPMY 120

Query: 125 VADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRI 184
           VADLIHFGAVYYALVCPQPP TA+ E+IRLFKKFT+PSFL GRKSIKGKT+REAQKTFRI
Sbjct: 121 VADLIHFGAVYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRI 180

Query: 185 THVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIE 244
           TH+DEFVEVGTYLRV+VHPKRFPRCYEIDWKSRIIAVT+SYVVLDKPAGTSVGGTT+NIE
Sbjct: 181 THIDEFVEVGTYLRVYVHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIE 240

Query: 245 ESCATFATRALGLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALS 304
           E+C TFATRALGLTSPLWTTHQIDNCTEGCVI ARTKEYCSIFH KIREKKVMKLYLAL+
Sbjct: 241 ETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALA 300

Query: 305 AAPVPMGIITHYMRPINIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDC 364
           A P+P GI+THYMRPIN+APRLVS+DCIDGW +CQLEVLECREVSWPDADIEAKY +EDC
Sbjct: 301 AVPLPKGIMTHYMRPINLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDC 360

Query: 365 GWPSKKKAYECRINLLTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCK 424
           GWPSKKKA+EC+INLLTGRTHQIRAQLAD GAPLVGDS+YMPA VAEM +PGLNPFGKCK
Sbjct: 361 GWPSKKKAFECKINLLTGRTHQIRAQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCK 420

Query: 425 KEYTNEEDKETAVAEWSALHGKEPAIAIGLQAYEISWDSREHSYNAGTPWWRQEQL 480
           KEYT+EEDKE AVAEW ALHGKEPA+AIGLQAYEISWDS +H YNAGTPWWRQEQL
Sbjct: 421 KEYTSEEDKENAVAEWIALHGKEPAVAIGLQAYEISWDSGKHIYNAGTPWWRQEQL 475

The following BLAST results are available for this feature:
BLAST of CSPI01G10870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PUS6_ARATH1.3e-18067.73RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770... [more]
PUS6_ORYSJ6.7e-16159.27RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=O... [more]
RLUD_XANAC1.0e-0726.20Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. c... [more]
Y292_MYCPN1.9e-0624.80Uncharacterized RNA pseudouridine synthase MG209 homolog OS=Mycoplasma pneumonia... [more]
RLUD_XANCP2.5e-0625.33Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. c... [more]
BLAST of CSPI01G10870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX47_CUCSA4.4e-28499.58Uncharacterized protein OS=Cucumis sativus GN=Csa_1G064140 PE=4 SV=1[more]
A0A0A0LU97_CUCSA4.2e-23482.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063630 PE=4 SV=1[more]
M5WN99_PRUPE6.3e-19870.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020640mg PE=4 SV=1[more]
B9RXP6_RICCO7.7e-19670.89Ribosomal pseudouridine synthase, putative OS=Ricinus communis GN=RCOM_0905350 P... [more]
B9H1E8_POPTR2.1e-19370.11Pseudouridine synthase family protein OS=Populus trichocarpa GN=POPTR_0004s01870... [more]
BLAST of CSPI01G10870 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21770.17.4e-18267.73 Pseudouridine synthase family protein[more]
BLAST of CSPI01G10870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658457|ref|XP_004151517.2|6.3e-28499.58PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis sativ... [more]
gi|659067778|ref|XP_008441255.1|2.1e-26393.75PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Cucumis melo][more]
gi|778658473|ref|XP_011652789.1|4.4e-26193.28PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis sativ... [more]
gi|659067784|ref|XP_008441277.1|4.1e-25190.34PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X3 [Cucumis melo][more]
gi|659067780|ref|XP_008441263.1|4.9e-23683.61PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluD
IPR020103PsdUridine_synth_cat_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10870.1CSPI01G10870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 224..391
score: 6.5
IPR020103Pseudouridine synthase, catalytic domainunknownSSF55120Pseudouridine synthasecoord: 208..333
score: 8.63E-29coord: 364..410
score: 8.63
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASEcoord: 439..479
score: 4.8E-95coord: 216..421
score: 4.8E-95coord: 172..182
score: 4.8
NoneNo IPR availablePANTHERPTHR11079:SF79RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTICcoord: 216..421
score: 4.8E-95coord: 439..479
score: 4.8E-95coord: 172..182
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10870Cucurbita maxima (Rimu)cmacpiB009
CSPI01G10870Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10870Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10870Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10870Cucurbita maxima (Rimu)cmacpiB865
CSPI01G10870Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10870Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10870Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10870Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10870Cucumber (Chinese Long) v2cpicuB000
CSPI01G10870Cucumber (Chinese Long) v2cpicuB044
CSPI01G10870Melon (DHL92) v3.5.1cpimeB024
CSPI01G10870Melon (DHL92) v3.5.1cpimeB086
CSPI01G10870Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10870Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10870Watermelon (97103) v1cpiwmB010
CSPI01G10870Watermelon (97103) v1cpiwmB043
CSPI01G10870Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10870Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10870Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G10870Bottle gourd (USVL1VR-Ls)cpilsiB011
CSPI01G10870Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10870Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10870Melon (DHL92) v3.6.1cpimedB023
CSPI01G10870Melon (DHL92) v3.6.1cpimedB076
CSPI01G10870Cucumber (Gy14) v2cgybcpiB001
CSPI01G10870Cucumber (Gy14) v2cgybcpiB247
CSPI01G10870Cucumber (Gy14) v2cgybcpiB299
CSPI01G10870Silver-seed gourdcarcpiB0531
CSPI01G10870Silver-seed gourdcarcpiB0670
CSPI01G10870Silver-seed gourdcarcpiB0908
CSPI01G10870Silver-seed gourdcarcpiB0968
CSPI01G10870Silver-seed gourdcarcpiB1044
CSPI01G10870Cucumber (Chinese Long) v3cpicucB001
CSPI01G10870Cucumber (Chinese Long) v3cpicucB051
CSPI01G10870Cucumber (Chinese Long) v3cpicucB061
CSPI01G10870Watermelon (97103) v2cpiwmbB001
CSPI01G10870Watermelon (97103) v2cpiwmbB032
CSPI01G10870Watermelon (97103) v2cpiwmbB061
CSPI01G10870Wax gourdcpiwgoB023
CSPI01G10870Wax gourdcpiwgoB047
CSPI01G10870Wax gourdcpiwgoB051
CSPI01G10870Wild cucumber (PI 183967)cpicpiB038
CSPI01G10870Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10870Wild cucumber (PI 183967)cpicpiB050
CSPI01G10870Cucumber (Gy14) v1cgycpiB016
CSPI01G10870Cucumber (Gy14) v1cgycpiB090