CSPI01G10480 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G10480
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LINE-1 reverse transcriptase isogeny
Location	Chr1 : 6598237 .. 6598824 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTCTCCCTCCCTCCCTTGCCTGATTCAGGATTTGACAATCCTCGTTGGACTTTAAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGGAAATCTATAACAACTTATGGAAATCTACCATCCCCGAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGTGTATCAATATAATGGATATTCTACAGAGAAGGGTCCCAACGTGGACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCACCCATTGCCCCTTCTCAACAATGCTCTGGAAGAAAGTTGAAGTTATTCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAACCATCAATCAACACCTGGTGGCTGCTACCCTTTGGAACATTTGGAATGGAAGAAACATAAGGATTTTTAAGGGGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTAG

mRNA sequence

ATGAAAGTCTCCCTCCCTCCCTTGCCTGATTCAGGATTTGACAATCCTCGTTGGACTTTAAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGGAAATCTATAACAACTTATGGAAATCTACCATCCCCGAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGTGTATCAATATAATGGATATTCTACAGAGAAGGGTCCCAACGTGGACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCACCCATTGCCCCTTCTCAACAATGCTCTGGAAGAAAGTTGAAGTTATTCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAACCATCAATCAACACCTGGTGGCTGCTACCCTTTGGAACATTTGGAATGGAAGAAACATAAGGATTTTTAAGGGGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTAG

Coding sequence (CDS)

ATGAAAGTCTCCCTCCCTCCCTTGCCTGATTCAGGATTTGACAATCCTCGTTGGACTTTAAACAACAATGGCAGCTTCACTGTGGCTTCCATCAAACTTGCAAGACCTCTAAACAACCAAGACGAGACCAACGAAGATGATGGGGAAATCTATAACAACTTATGGAAATCTACCATCCCCGAAAGATGCAAATTCTTCGTATGGACTCTCCTACATGAGTGTATCAATATAATGGATATTCTACAGAGAAGGGTCCCAACGTGGACTATAAAGCCCTCTTGGTGCATCCTCTGCAAAGCTGCTGAGGAAGACAGACAACATCTTTTCACCCATTGCCCCTTCTCAACAATGCTCTGGAAGAAAGTTGAAGTTATTCTGGGCAAACCCCTGCTCTTTCCAAATTCCACTGCCTTATGCAAAGATCTCTTCAAAACAAAAGGTAAAACAAAAAAGCAAACCATCAATCAACACCTGGTGGCTGCTACCCTTTGGAACATTTGGAATGGAAGAAACATAAGGATTTTTAAGGGGGAAGAAAAAAAAGTTGATTCCGTATGGGAAGACATACAAGCCATAACGGGTTTTTAG

Homology

[Close]

BLAST of CSPI01G10480 vs. TrEMBL
Match: M5XV38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 14  DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
           D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW   + 
Sbjct: 265 DRRSWEVEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANG 324

Query: 74  CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
            IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW K+   LG   + P
Sbjct: 325 RINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIP 384

Query: 134 NST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWEDIQ 191
                L     +  GK K+  I    LV A  WNIW  RN RIF+G    +V+ +W+ I+
Sbjct: 385 KGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIK 439

[Close]

BLAST of CSPI01G10480 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 14   DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
            D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW   + 
Sbjct: 1295 DRRSWEVEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANG 1354

Query: 74   CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
             IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW K+   LG   + P
Sbjct: 1355 RINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIP 1414

Query: 134  NST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWEDIQ 191
                 L     +  GK K+  I    LV A  WNIW  RN RIF+G    +V+ +W+ I+
Sbjct: 1415 KGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIK 1469

[Close]

BLAST of CSPI01G10480 vs. TrEMBL
Match: M5VH03_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019714mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 14  DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
           D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW   + 
Sbjct: 225 DQRSWEVEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANG 284

Query: 74  CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
            IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW ++   LG   + P
Sbjct: 285 RINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGVEWVIP 344

Query: 134 NST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWEDIQ 191
                L     +  GK K+  I    LV A  WNIW  RN + F+G  E +V+ +W+ I+
Sbjct: 345 KGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNRKKFQGHIEVRVEELWDRIK 399

[Close]

BLAST of CSPI01G10480 vs. TrEMBL
Match: M5X8A1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017388mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 62/183 (33.88%), Postives = 90/183 (49.18%), Query Frame = 1


Query: 11  SGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTL 70
           S  D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW  
Sbjct: 84  SRLDRRSWEIEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLA 143

Query: 71  LHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPL 130
            +  IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW ++   LG   
Sbjct: 144 ANGRINTCDCIQRRQPKICLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALGAEW 203

Query: 131 LFPNST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWE 190
           + P     L     +  GK K+  I    LV A  WNIW  R  RIF+G    +V+ +W+
Sbjct: 204 VIPKGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERYRRIFQGHIGVRVEELWD 261

[Close]

BLAST of CSPI01G10480 vs. TrEMBL
Match: M5XJT6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-21
Identity = 61/185 (32.97%), Postives = 89/185 (48.11%), Query Frame = 1


Query: 14  DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
           D  RW L ++GSFT  S +       + ET       ++ +WK+  P + K FVW +   
Sbjct: 90  DRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPP----FSLVWKAKSPPKVKVFVWLVALG 149

Query: 74  CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
            +N  D++QR+ P   + P WC+LCK  EE   HLF HCPFS  LW  +   +G   + P
Sbjct: 150 KVNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIP 209

Query: 134 N--STALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKG-EEKKVDSVWEDIQ 193
              S  LC D           T+   LV +  W IW  RN RIF+  +  +V  +W+ ++
Sbjct: 210 KGCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFEDYKGVRVSDLWDRVK 269

Query: 194 AITGF 196
               F
Sbjct: 270 YWAAF 270

[Close]

BLAST of CSPI01G10480 vs. TAIR10
Match: AT1G43730.1 (AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 42/144 (29.17%), Postives = 69/144 (47.92%), Query Frame = 1


Query: 51  YNNLW-KSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIK-PSWCILCKAAEEDRQHL 110
           Y  +W K+ +P+   F  W +    ++  D    R+ +W +  P+ C+LC + +E R HL
Sbjct: 152 YKAVWFKNHVPKHA-FICWVVAWNRLHTRD----RLRSWGLSIPAVCLLCNSHDESRAHL 211

Query: 111 FTHCPFSTMLWKKVEVILGKPLLFPNSTAL-CKDLFKTKGKTKKQTINQHLV-AATLWNI 170
           F  CPF   +W+      G+  LFP +  + C        + K  T+   L   A ++ I
Sbjct: 212 FFECPFCGAVWR---FFTGRANLFPPAQLMYCLIWLLNPSRDKNTTLIIRLAFQAYVYAI 271

Query: 171 WNGRNIRIFKGEEKKVDSVWEDIQ 191
           W  RN+ +  G  +  DSV +DIQ
Sbjct: 272 WRERNLCLHTGVARVFDSVLKDIQ 287

[Close]

BLAST of CSPI01G10480 vs. TAIR10
Match: AT4G04650.1 (AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 37/140 (26.43%), Postives = 64/140 (45.71%), Query Frame = 1


Query: 55  WKSTIPERCKFFVWTLLHECINIMDILQRRVPTWTIK-PSWCILCKAAEEDRQHLFTHCP 114
           +K+ +P+   F  W +    ++  D LQ     W +  P+ C+LC A ++ R HLF  C 
Sbjct: 135 FKNHVPKHA-FICWVVAWNRLHTRDRLQN----WGLSIPAECLLCNAHDDSRAHLFFECQ 194

Query: 115 FSTMLWKKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLV-AATLWNIWNGRNI 174
           FS ++W+         L  P     C +   +  + K   +   L   + ++ IW  RN 
Sbjct: 195 FSGVVWRFFTA--STNLNPPAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQ 254

Query: 175 RIFKGEEKKVDSVWEDIQAI 193
           R+  G  +  +S+ +DIQ I
Sbjct: 255 RLHSGVSRSTESILKDIQLI 267

[Close]

BLAST of CSPI01G10480 vs. TAIR10
Match: AT1G45063.1 (AT1G45063.1 copper ion binding;electron carriers)

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-08
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 1


Query: 84  RVPTWTIK-PSWCILCKAAEEDRQHLFTHCPFSTMLWKKV--EVILGKPLLFPNSTALCK 143
           R  +W I+ PS C+LC A +E RQH+F  CPFS  +W        +  P +F +S    +
Sbjct: 272 RFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVTPPRMFKDSARWLR 331

Query: 144 DLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRI 175
              + K   K   I +    A++++IW  RNIR+
Sbjct: 332 HPCRDK---KVAFILKLAYQASVYHIWRERNIRL 362

[Close]

BLAST of CSPI01G10480 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 172.2 bits (435), Expect = 9.2e-40
Identity = 80/195 (41.03%), Postives = 109/195 (55.90%), Query Frame = 1


Query: 1   MKVSLP-PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTI 60
           +K SLP PLP+ G   P W LN+N  F  AS+K A         N     +Y  LWK   
Sbjct: 191 IKASLPTPLPNRGHPKPLWKLNSNNIFDTASVKRALAEAPISPANFHPN-LYKTLWKVEF 250

Query: 61  PERCKFFVWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLW 120
           P++CKFF+WTL+H CIN  D LQ+R+P WT+ P+WC +C  ++ED  HLF HCP+S  LW
Sbjct: 251 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 310

Query: 121 KKVEVILGKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNIWNGRNIRIFKGEE 180
            K + +L       +  +L +++     + +K  I  +  A  LW IW  RN RIFK +E
Sbjct: 311 SKAKALLNWNSTPTDVQSLVQNICSLNTRNQKGLITFNTNATILWKIWLERNNRIFKQQE 370

Query: 181 KKVDSVWEDIQAITG 195
           K    +WED  A  G
Sbjct: 371 KAPQDLWEDTLAQIG 384

[Close]

BLAST of CSPI01G10480 vs. NCBI nr
Match: gi|659071582|ref|XP_008460744.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 1


Query: 7   PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFF 66
           P P+ G     W LN+NG F++AS+K A      D+        +N+LWKS IP+RCKFF
Sbjct: 109 PHPNKGAPKSFWKLNSNGGFSIASVKKALNSIEIDDNIAIQASTFNSLWKSEIPKRCKFF 168

Query: 67  VWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVIL 126
           +WTL+HECIN  + LQ+R+P + + P WC +CK+  ED  HLF  CP++  +W K   IL
Sbjct: 169 IWTLIHECINTAEKLQKRLPNYNLCPQWCSMCKSNAEDINHLFIQCPYAQTIWNKARHIL 228

Query: 127 GKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVAATLWNI 167
                  +  +LCKD        +K++I  +L+A TLW I
Sbjct: 229 NWNQQPTSVRSLCKDFCGFNTANRKRSITFNLIAVTLWKI 268

[Close]

BLAST of CSPI01G10480 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 1


Query: 7   PLPDSGFDNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFF 66
           P  + G   P WT ++N SF+ AS K+           +   ++   +WKSTIP + KFF
Sbjct: 265 PRSNRGSSKPTWTPDSNNSFSTASAKVLISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 324

Query: 67  VWTLLHECINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVIL 126
           +W L+   IN M+++Q+R+P   ++P+WC+LCK   E   HL   C     LW      L
Sbjct: 325 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDNESGTHLLLRCEAVKPLWS----FL 384

Query: 127 GKPLLFPNSTALCKDLFKTKGKTKKQTINQHLVA-----ATLWNIWNGRNIRIF--KGEE 186
              L F  +T   +D+F +   + K +I +H V      A  W IW  RN+RIF      
Sbjct: 385 QHSLNFALNTDELEDVF-SFFSSLKCSIPKHKVVFCGIIALFWEIWCERNLRIFGTSSSH 444

Query: 187 KKVDSVWEDIQAITG 195
           K   ++WED + + G
Sbjct: 445 KTTANMWEDCKILIG 454

[Close]

BLAST of CSPI01G10480 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 14   DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
            D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW   + 
Sbjct: 1295 DRRSWEVEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANG 1354

Query: 74   CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
             IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW K+   LG   + P
Sbjct: 1355 RINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIP 1414

Query: 134  NST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWEDIQ 191
                 L     +  GK K+  I    LV A  WNIW  RN RIF+G    +V+ +W+ I+
Sbjct: 1415 KGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIK 1469

[Close]

BLAST of CSPI01G10480 vs. NCBI nr
Match: gi|596232261|ref|XP_007224309.1| (hypothetical protein PRUPE_ppa019854mg [Prunus persica])

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 63/180 (35.00%), Postives = 90/180 (50.00%), Query Frame = 1


Query: 14  DNPRWTLNNNGSFTVASIKLARPLNNQDETNEDDGEIYNNLWKSTIPERCKFFVWTLLHE 73
           D   W +   GSF+  S +     +    T  D    ++++WK+  P + +FFVW   + 
Sbjct: 265 DRRSWEVEEQGSFSCKSFR-----SFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANG 324

Query: 74  CINIMDILQRRVPTWTIKPSWCILCKAAEEDRQHLFTHCPFSTMLWKKVEVILGKPLLFP 133
            IN  D +QRR P   + PSWC+LCK   E+  HLF HC +S  LW K+   LG   + P
Sbjct: 325 RINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALGVEWVIP 384

Query: 134 NST-ALCKDLFKTKGKTKKQTI-NQHLVAATLWNIWNGRNIRIFKGE-EKKVDSVWEDIQ 191
                L     +  GK K+  I    LV A  WNIW  RN RIF+G    +V+ +W+ I+
Sbjct: 385 KGCFELLSINLRISGKGKRAGILRDCLVHAIFWNIWMERNQRIFQGHIGVRVEELWDRIK 439

The following BLAST results are available for this feature:

BLAST of CSPI01G10480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G10480 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XV38_PRUPE	2.1e-22	35.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019854mg PE=4 SV=1	[more]
M5WJ76_PRUPE	2.1e-22	35.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S...	[more]
M5VH03_PRUPE	1.0e-21	33.89	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019714mg PE=4 S...	[more]
M5X8A1_PRUPE	2.3e-21	33.88	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017388mg PE=4 S...	[more]
M5XJT6_PRUPE	5.1e-21	32.97	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027084mg PE=4 S...	[more]

BLAST of CSPI01G10480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G43730.1	2.5e-11	29.17	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT4G04650.1	5.2e-09	26.43	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT1G45063.1	9.8e-08	34.04	copper ion binding;electron carriers	[more]

BLAST of CSPI01G10480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122972\|ref\|XP_008461420.1\|	9.2e-40	41.03	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659071582\|ref\|XP_008460744.1\|	4.9e-33	41.25	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659086627\|ref\|XP_008444035.1\|	5.4e-24	32.82	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|595882371\|ref\|XP_007212580.1\|	3.0e-22	35.00	hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica]	[more]
gi\|596232261\|ref\|XP_007224309.1\|	3.0e-22	35.00	hypothetical protein PRUPE_ppa019854mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G10480.1	CSPI01G10480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 47..119 score: 1.9
None	No IPR available	PANTHER	PTHR25952	FAMILY NOT NAMED	coord: 1..188 score: 5.5
None	No IPR available	PANTHER	PTHR25952:SF208	SUBFAMILY NOT NAMED	coord: 1..188 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G10480	Silver-seed gourd	carcpiB0531
CSPI01G10480	Silver-seed gourd	carcpiB0670
CSPI01G10480	Silver-seed gourd	carcpiB0968
CSPI01G10480	Silver-seed gourd	carcpiB1044
CSPI01G10480	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G10480	Cucumber (Chinese Long) v3	cpicucB009
CSPI01G10480	Cucumber (Chinese Long) v3	cpicucB010
CSPI01G10480	Cucumber (Chinese Long) v3	cpicucB017
CSPI01G10480	Cucumber (Chinese Long) v3	cpicucB051
CSPI01G10480	Watermelon (97103) v2	cpiwmbB001
CSPI01G10480	Watermelon (97103) v2	cpiwmbB032
CSPI01G10480	Watermelon (97103) v2	cpiwmbB041
CSPI01G10480	Wax gourd	cpiwgoB033
CSPI01G10480	Wax gourd	cpiwgoB047
CSPI01G10480	Wild cucumber (PI 183967)	cpicpiB038
CSPI01G10480	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G10480	Cucumber (Gy14) v1	cgycpiB016
CSPI01G10480	Cucumber (Gy14) v1	cgycpiB090
CSPI01G10480	Cucurbita maxima (Rimu)	cmacpiB219
CSPI01G10480	Cucurbita maxima (Rimu)	cmacpiB401
CSPI01G10480	Cucurbita maxima (Rimu)	cmacpiB656
CSPI01G10480	Cucurbita maxima (Rimu)	cmacpiB865
CSPI01G10480	Cucurbita moschata (Rifu)	cmocpiB205
CSPI01G10480	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G10480	Cucurbita moschata (Rifu)	cmocpiB648
CSPI01G10480	Cucurbita moschata (Rifu)	cmocpiB845
CSPI01G10480	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G10480	Cucumber (Chinese Long) v2	cpicuB044
CSPI01G10480	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G10480	Melon (DHL92) v3.5.1	cpimeB036
CSPI01G10480	Melon (DHL92) v3.5.1	cpimeB086
CSPI01G10480	Watermelon (Charleston Gray)	cpiwcgB016
CSPI01G10480	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G10480	Watermelon (97103) v1	cpiwmB010
CSPI01G10480	Watermelon (97103) v1	cpiwmB043
CSPI01G10480	Cucurbita pepo (Zucchini)	cpecpiB050
CSPI01G10480	Cucurbita pepo (Zucchini)	cpecpiB474
CSPI01G10480	Cucurbita pepo (Zucchini)	cpecpiB506
CSPI01G10480	Bottle gourd (USVL1VR-Ls)	cpilsiB018
CSPI01G10480	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G10480	Bottle gourd (USVL1VR-Ls)	cpilsiB030
CSPI01G10480	Melon (DHL92) v3.6.1	cpimedB020
CSPI01G10480	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G10480	Melon (DHL92) v3.6.1	cpimedB076
CSPI01G10480	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G10480	Cucumber (Gy14) v2	cgybcpiB247