CSPI01G10410 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10410
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 6561072 .. 6561974 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCATCTCGCAACAAACAAAGGAGAATGGTGGAATGCCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGTTCAAGGAGTTTGGGAAGCAACAGAGCCAGCGAGAGGAGCCGAAGTGGATGTTAAGAAAGACAAGAAGGCACGTGCATACATTCTCCAATACATCCCGGAAGATGTGCTTCTATAAATCGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCAATGATTTCGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGGGTTGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTCCCATTGTCGCCGGAATCGAGCAATTCCAAGATCTCGAAACTATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCATACGAGGAGCGAACAACACGACTCCGAGAAAACAATAACAACACCGATGGGCAACTCCTACTTACCCATGCCGAATGGAAAGCTAGACAAAAAGGACATAGTGGTGACAACTCTTCGATGAACAAAGGGCATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACATGGTCGTGGCTGTGGTCGTGACACTGAGCGTCAAAATAGTGCGGGAGACACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACATTAAGTGTTTCACTTGCAACAAGATGGAACATTACGCGTCGAAATGTCCTGGAAAAGGTCGTGACGACGAAGCTCATCTAA

mRNA sequence

ATGGCAAGCATCTCGCAACAAACAAAGGAGAATGGTGGAATGCCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGTTCAAGGAGTTTGGGAAGCAACAGAGCCAGCGAGAGGAGCCGAAAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCAATGATTTCGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGGGTTGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTCCCATTGTCGCCGGAATCGAGCAATTCCAAGATCTCGAAACTATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCATACGAGGAGCGAACAACACGACTCCGAGAAAACAATAACAACACCGATGGGCAACTCCTACTTACCCATGCCGAATGGAAAGCTAGACAAAAAGGACATAGTGGTGACAACTCTTCGATGAACAAAGGGCATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACATGGTCGTGGCTGTGGTCGTGACACTGAGCGTCAAAATAGTGCGGGAGACACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACATTAAGTGTTTCACTTGCAACAAGATGGAACATTACGCGTCGAAATGTCCTGGAAAAGGTCGTGACGACGAAGCTCATCTAA

Coding sequence (CDS)

ATGGCAAGCATCTCGCAACAAACAAAGGAGAATGGTGGAATGCCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGTTCAAGGAGTTTGGGAAGCAACAGAGCCAGCGAGAGGAGCCGAAAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGGGTGAAGATGGCGAGAGTTCAAACCTTGAAGAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCAATGATTTCGCAGGAAAAATCAGCGGATTAGCAAGCAAGTTCACCACCCTCGGGGTTGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTCCCATTGTCGCCGGAATCGAGCAATTCCAAGATCTCGAAACTATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCATACGAGGAGCGAACAACACGACTCCGAGAAAACAATAACAACACCGATGGGCAACTCCTACTTACCCATGCCGAATGGAAAGCTAGACAAAAAGGACATAGTGGTGACAACTCTTCGATGAACAAAGGGCATTTGGTGGTACCGATCGAGGAAGATGGCGAGGACATGGTCGTGGCTGTGGTCGTGACACTGAGCGTCAAAATAGTGCGGGAGACACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACATTAAGTGTTTCACTTGCAACAAGATGGAACATTACGCGTCGAAATGTCCTGGAAAAGGTCGTGACGACGAAGCTCATCTAA
Homology
[Close]
BLAST of CSPI01G10410 vs. TrEMBL
Match: B6TPM7_MAIZE (Retrotransposon protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 107/217 (49.31%), Postives = 144/217 (66.36%), Query Frame = 1 

Query: 18  YPMLTPHNYTVWTIKAEAILDVQGVWEATEP-------------ARG------------- 77
           YP+L+P +YT W IK E+ILD QG+WEA  P             AR              
Sbjct: 30  YPVLSPASYTAWAIKVESILDAQGLWEAVSPPDNGEVNAVKNKTARAQLLQALPDDILMQ 89

Query: 78  -AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETINDFAGKISGLASK 137
            + KKTA E+W SLKTR++G++RVK AR+ TLK EF+ L M++ E ++D+AGKISG+A++
Sbjct: 90  VSIKKTAAEVWASLKTRFVGADRVKTARLATLKGEFDKLYMEDEEALDDYAGKISGMAAR 149

Query: 138 FTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAIGRMKAYEERT-TR 197
           +  LG  L+D+++VKKLLD+VPD+  P+VAGIEQF D+ETMPFEEA+GR+KA++ER+  R
Sbjct: 150 YAGLGATLDDAAMVKKLLDTVPDRLFPVVAGIEQFCDVETMPFEEALGRLKAFDERSRRR 209

Query: 198 LRENNNNTDGQLLLTHAEWKARQKGHSGDNSSMNKGH 207
                   D QLLLT AEWKAR+K  S      N G+
Sbjct: 210 THAGGERRDDQLLLTEAEWKARKKKKSTIGKCFNCGN 246

[Close]
BLAST of CSPI01G10410 vs. TrEMBL
Match: Q2QVG3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12910 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.0e-48
Identity = 109/207 (52.66%), Postives = 139/207 (67.15%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   GG+ + YPMLT  NY+ W IK EA ++ QG+W+A E A               
Sbjct: 8   ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 67

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A KKTAKE W+SLKTR+LG +RVK ARVQTLKSEF  L MK+TETI
Sbjct: 68  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 127

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+  + LG  + D  LVKKLLDSVP+K+L I+A IEQF DL+TMPFEEAI
Sbjct: 128 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 187

[Close]
BLAST of CSPI01G10410 vs. TrEMBL
Match: Q0JH75_ORYSJ (Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 104/210 (49.52%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   G + + YP+LT  NY+ W IK EA ++ QG+W+A EPA               
Sbjct: 17  ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 76

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A+KKTAKE+W+SLKTR+LG ERVK ARVQTLKS+F  L MK+TE+I
Sbjct: 77  CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 136

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+K + LGV ++D   VKKLLDSVPDK+L ++A IEQF DL++MPF+EAI
Sbjct: 137 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 196

Query: 185 GRMKAYEERTTRLRENNNNTDGQLLLTHAE 188
           GR+KAYEE   R+R+ ++     LL T  +
Sbjct: 197 GRLKAYEE---RIRKRDDKNGEHLLFTSGD 223

[Close]
BLAST of CSPI01G10410 vs. TrEMBL
Match: Q2QUP7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g15530 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 104/210 (49.52%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   G + + YP+LT  NY+ W IK EA ++ QG+W+A EPA               
Sbjct: 430 ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 489

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A+KKTAKE+W+SLKTR+LG ERVK ARVQTLKS+F  L MK+TE+I
Sbjct: 490 CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 549

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+K + LGV ++D   VKKLLDSVPDK+L ++A IEQF DL++MPF+EAI
Sbjct: 550 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 609

Query: 185 GRMKAYEERTTRLRENNNNTDGQLLLTHAE 188
           GR+KAYEE   R+R+ ++     LL T  +
Sbjct: 610 GRLKAYEE---RIRKRDDKNGEHLLFTSGD 636

[Close]
BLAST of CSPI01G10410 vs. TrEMBL
Match: Q0IZT5_ORYSJ (Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.5e-47
Identity = 118/259 (45.56%), Postives = 156/259 (60.23%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   GG+ + YPMLT  NY+ W IK EA ++ QG+W+A E A               
Sbjct: 17  ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 76

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A KKTAKE W+SLKTR+LG +RVK ARVQTLKSEF  L MK+TETI
Sbjct: 77  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 136

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+  + LG  + D  LVKKLLDSVP+K+L I+A IEQF DL+TMPFEEAI
Sbjct: 137 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 196

Query: 185 GRMKAYEERTTRLRENNNNTDGQLLLTHA---EWKARQKGHSGDNSSM------NKGHLV 228
           GR+KA+EE   R+R++++N   QLLLT     +   R +G   D S +        GH  
Sbjct: 197 GRLKAFEE---RIRKHSDNDGEQLLLTTRNTDDGAGRARGKRFDKSKVMCYHCQELGHFA 256

[Close]
BLAST of CSPI01G10410 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 6.3e-87
Identity = 175/233 (75.11%), Postives = 185/233 (79.40%), Query Frame = 1 

Query: 1   MASISQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG--------- 60
           MAS+SQQTKENG MPI YPML PHNYT+WTIK EAILD Q VWEA EP RG         
Sbjct: 1   MASVSQQTKENGRMPIFYPMLCPHNYTMWTIKTEAILDTQEVWEAIEPIRGLEVDVKKDK 60

Query: 61  ------------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
                             A+KK+AKEIWD+LKTRYLGSERVKMARV  LKSEFNVL+MKE
Sbjct: 61  KACVYILQCILEDVLLQIAKKKSAKEIWDNLKTRYLGSERVKMARVGILKSEFNVLRMKE 120

Query: 121 TETINDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPF 180
           TETI++FAGKIS LASKFTTLGVALEDSSLVKKLLDSVPDKYL IV  IEQFQDLETMPF
Sbjct: 121 TETIDEFAGKISKLASKFTTLGVALEDSSLVKKLLDSVPDKYLLIVTRIEQFQDLETMPF 180

Query: 181 EEAIGRMKAYEERTTRLRENNNNTDGQLLLTHAEWKARQKGHSGDNSSMNKGH 207
           EE IGRM  YEERTT+L  NNNNTDGQLLLTHAEWKARQK +SG NSSMNKGH
Sbjct: 181 EETIGRMMVYEERTTQLLGNNNNTDGQLLLTHAEWKARQKENSGGNSSMNKGH 233

[Close]
BLAST of CSPI01G10410 vs. NCBI nr
Match: gi|226500000|ref|NP_001150428.1| (retrotransposon protein [Zea mays])

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 107/217 (49.31%), Postives = 144/217 (66.36%), Query Frame = 1 

Query: 18  YPMLTPHNYTVWTIKAEAILDVQGVWEATEP-------------ARG------------- 77
           YP+L+P +YT W IK E+ILD QG+WEA  P             AR              
Sbjct: 30  YPVLSPASYTAWAIKVESILDAQGLWEAVSPPDNGEVNAVKNKTARAQLLQALPDDILMQ 89

Query: 78  -AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETINDFAGKISGLASK 137
            + KKTA E+W SLKTR++G++RVK AR+ TLK EF+ L M++ E ++D+AGKISG+A++
Sbjct: 90  VSIKKTAAEVWASLKTRFVGADRVKTARLATLKGEFDKLYMEDEEALDDYAGKISGMAAR 149

Query: 138 FTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAIGRMKAYEERT-TR 197
           +  LG  L+D+++VKKLLD+VPD+  P+VAGIEQF D+ETMPFEEA+GR+KA++ER+  R
Sbjct: 150 YAGLGATLDDAAMVKKLLDTVPDRLFPVVAGIEQFCDVETMPFEEALGRLKAFDERSRRR 209

Query: 198 LRENNNNTDGQLLLTHAEWKARQKGHSGDNSSMNKGH 207
                   D QLLLT AEWKAR+K  S      N G+
Sbjct: 210 THAGGERRDDQLLLTEAEWKARKKKKSTIGKCFNCGN 246

[Close]
BLAST of CSPI01G10410 vs. NCBI nr
Match: gi|77553519|gb|ABA96315.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 199.9 bits (507), Expect = 5.7e-48
Identity = 109/207 (52.66%), Postives = 139/207 (67.15%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   GG+ + YPMLT  NY+ W IK EA ++ QG+W+A E A               
Sbjct: 8   ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 67

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A KKTAKE W+SLKTR+LG +RVK ARVQTLKSEF  L MK+TETI
Sbjct: 68  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 127

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+  + LG  + D  LVKKLLDSVP+K+L I+A IEQF DL+TMPFEEAI
Sbjct: 128 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 187

[Close]
BLAST of CSPI01G10410 vs. NCBI nr
Match: gi|113534520|dbj|BAF06903.1| (Os01g0879800 [Oryza sativa Japonica Group])

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 104/210 (49.52%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   G + + YP+LT  NY+ W IK EA ++ QG+W+A EPA               
Sbjct: 17  ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 76

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A+KKTAKE+W+SLKTR+LG ERVK ARVQTLKS+F  L MK+TE+I
Sbjct: 77  CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 136

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+K + LGV ++D   VKKLLDSVPDK+L ++A IEQF DL++MPF+EAI
Sbjct: 137 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 196

Query: 185 GRMKAYEERTTRLRENNNNTDGQLLLTHAE 188
           GR+KAYEE   R+R+ ++     LL T  +
Sbjct: 197 GRLKAYEE---RIRKRDDKNGEHLLFTSGD 223

[Close]
BLAST of CSPI01G10410 vs. NCBI nr
Match: gi|77554492|gb|ABA97288.1| (retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 104/210 (49.52%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 5   SQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDVQGVWEATEPARG------------- 64
           + ++   G + + YP+LT  NY+ W IK EA ++ QG+W+A EPA               
Sbjct: 430 ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 489

Query: 65  --------------AEKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
                         A+KKTAKE+W+SLKTR+LG ERVK ARVQTLKS+F  L MK+TE+I
Sbjct: 490 CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 549

Query: 125 NDFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVAGIEQFQDLETMPFEEAI 184
           ++FAGKISGLA+K + LGV ++D   VKKLLDSVPDK+L ++A IEQF DL++MPF+EAI
Sbjct: 550 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 609

Query: 185 GRMKAYEERTTRLRENNNNTDGQLLLTHAE 188
           GR+KAYEE   R+R+ ++     LL T  +
Sbjct: 610 GRLKAYEE---RIRKRDDKNGEHLLFTSGD 636

The following BLAST results are available for this feature:
BLAST of CSPI01G10410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10410 vs. TrEMBL
Match NameE-valueIdentityDescription
B6TPM7_MAIZE1.4e-4849.31Retrotransposon protein OS=Zea mays PE=2 SV=1[more]
Q2QVG3_ORYSJ4.0e-4852.66Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
Q0JH75_ORYSJ1.2e-4749.52Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1[more]
Q2QUP7_ORYSJ1.2e-4749.52Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa... [more]
Q0IZT5_ORYSJ1.5e-4745.56Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1[more]
BLAST of CSPI01G10410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722274|ref|XP_011658449.1|6.3e-8775.11PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus][more]
gi|226500000|ref|NP_001150428.1|2.0e-4849.31retrotransposon protein [Zea mays][more]
gi|77553519|gb|ABA96315.1|5.7e-4852.66retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|113534520|dbj|BAF06903.1|1.7e-4749.52Os01g0879800 [Oryza sativa Japonica Group][more]
gi|77554492|gb|ABA97288.1|1.7e-4749.52retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa J... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10410.1CSPI01G10410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 153..173
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..194
score: 5.2
NoneNo IPR availablePANTHERPTHR11439:SF172SUBFAMILY NOT NAMEDcoord: 1..194
score: 5.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 52..167
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G10410Cucumber (Chinese Long) v3cpicucB001
CSPI01G10410Cucumber (Chinese Long) v3cpicucB009
CSPI01G10410Cucumber (Chinese Long) v3cpicucB010
CSPI01G10410Cucumber (Chinese Long) v3cpicucB017
CSPI01G10410Cucumber (Chinese Long) v3cpicucB051
CSPI01G10410Watermelon (97103) v2cpiwmbB001
CSPI01G10410Watermelon (97103) v2cpiwmbB032
CSPI01G10410Watermelon (97103) v2cpiwmbB041
CSPI01G10410Wax gourdcpiwgoB033
CSPI01G10410Wax gourdcpiwgoB047
CSPI01G10410Wild cucumber (PI 183967)cpicpiB038
CSPI01G10410Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G10410Cucumber (Gy14) v1cgycpiB016
CSPI01G10410Cucumber (Gy14) v1cgycpiB090
CSPI01G10410Cucurbita maxima (Rimu)cmacpiB219
CSPI01G10410Cucurbita maxima (Rimu)cmacpiB401
CSPI01G10410Cucurbita maxima (Rimu)cmacpiB656
CSPI01G10410Cucurbita maxima (Rimu)cmacpiB865
CSPI01G10410Cucurbita moschata (Rifu)cmocpiB205
CSPI01G10410Cucurbita moschata (Rifu)cmocpiB383
CSPI01G10410Cucurbita moschata (Rifu)cmocpiB648
CSPI01G10410Cucurbita moschata (Rifu)cmocpiB845
CSPI01G10410Cucumber (Chinese Long) v2cpicuB013
CSPI01G10410Cucumber (Chinese Long) v2cpicuB000
CSPI01G10410Cucumber (Chinese Long) v2cpicuB044
CSPI01G10410Melon (DHL92) v3.5.1cpimeB024
CSPI01G10410Melon (DHL92) v3.5.1cpimeB036
CSPI01G10410Melon (DHL92) v3.5.1cpimeB086
CSPI01G10410Watermelon (Charleston Gray)cpiwcgB016
CSPI01G10410Watermelon (Charleston Gray)cpiwcgB038
CSPI01G10410Watermelon (97103) v1cpiwmB010
CSPI01G10410Watermelon (97103) v1cpiwmB043
CSPI01G10410Cucurbita pepo (Zucchini)cpecpiB050
CSPI01G10410Cucurbita pepo (Zucchini)cpecpiB474
CSPI01G10410Cucurbita pepo (Zucchini)cpecpiB506
CSPI01G10410Bottle gourd (USVL1VR-Ls)cpilsiB018
CSPI01G10410Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G10410Bottle gourd (USVL1VR-Ls)cpilsiB030
CSPI01G10410Melon (DHL92) v3.6.1cpimedB020
CSPI01G10410Melon (DHL92) v3.6.1cpimedB023
CSPI01G10410Melon (DHL92) v3.6.1cpimedB076
CSPI01G10410Cucumber (Gy14) v2cgybcpiB001
CSPI01G10410Cucumber (Gy14) v2cgybcpiB247
CSPI01G10410Silver-seed gourdcarcpiB0531
CSPI01G10410Silver-seed gourdcarcpiB0670
CSPI01G10410Silver-seed gourdcarcpiB0968
CSPI01G10410Silver-seed gourdcarcpiB1044