CSPI01G10270 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G10270
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 6430160 .. 6430522 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGGAGTGCAGATGGCCGATATGGAAAGCTCAATAAATGATCTTTTTATTGAGGATGATGACACTAATTCCTCTTCTTCTGGTTCACAAAGCAGTGATAAATCTGAAGCTAACTACAGTTTGCCAGATCAGGACAATAGTGCTCCGCTGGCTGATGAAGTTGTCATCAATATAAACGATGGAGAAGAGGAAGATGAAGAAGACGAGAAGGACAAGGAAGAAGAGAGAAAACACGATTCCACGTCCGAGAAAGAAGAGATAAAAAACGATTCCACGTCCGAGAAAGAAGAAGAGGAGTACAAGGAAGAGAGCAACAACGATGGAGTAGAAGCTGAACTCATTCCAGATCCAGTCCCGTAA

mRNA sequence

ATGCGAGGAGTGCAGATGGCCGATATGGAAAGCTCAATAAATGATCTTTTTATTGAGGATGATGACACTAATTCCTCTTCTTCTGGTTCACAAAGCAGTGATAAATCTGAAGCTAACTACAGTTTGCCAGATCAGGACAATAGTGCTCCGCTGGCTGATGAAGTTGTCATCAATATAAACGATGGAGAAGAGGAAGATGAAGAAGACGAGAAGGACAAGGAAGAAGAGAGAAAACACGATTCCACGTCCGAGAAAGAAGAGATAAAAAACGATTCCACGTCCGAGAAAGAAGAAGAGGAGTACAAGGAAGAGAGCAACAACGATGGAGTAGAAGCTGAACTCATTCCAGATCCAGTCCCGTAA

Coding sequence (CDS)

ATGCGAGGAGTGCAGATGGCCGATATGGAAAGCTCAATAAATGATCTTTTTATTGAGGATGATGACACTAATTCCTCTTCTTCTGGTTCACAAAGCAGTGATAAATCTGAAGCTAACTACAGTTTGCCAGATCAGGACAATAGTGCTCCGCTGGCTGATGAAGTTGTCATCAATATAAACGATGGAGAAGAGGAAGATGAAGAAGACGAGAAGGACAAGGAAGAAGAGAGAAAACACGATTCCACGTCCGAGAAAGAAGAGATAAAAAACGATTCCACGTCCGAGAAAGAAGAAGAGGAGTACAAGGAAGAGAGCAACAACGATGGAGTAGAAGCTGAACTCATTCCAGATCCAGTCCCGTAA
Homology
[Close]
BLAST of CSPI01G10270 vs. TrEMBL
Match: A0A0A0LUM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058160 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.7e-22
Identity = 81/120 (67.50%), Postives = 92/120 (76.67%), Query Frame = 1 

Query: 6   MADMESSINDLFIEDDDTNSSSSGSQSSDKSEANYSLPDQDNSAPLADEVVININDGEEE 65
           MA  ESSINDL  EDDDTNSSSSGSQS  KSEANYS PDQDN+ P A++V ININ+GEEE
Sbjct: 1   MAIKESSINDLSQEDDDTNSSSSGSQSRGKSEANYSFPDQDNNTPPAEDVFININEGEEE 60

Query: 66  DEEDEKDKEEERKHDSTSEKEEIKNDSTSEKEEEEYK-----EESNNDGVEAELIPDPVP 121
           +E +E   EE  K+DSTS+KEE KNDSTSEKEE +       EES N+GVEAE IP+ VP
Sbjct: 61  EEGEE---EEISKNDSTSKKEESKNDSTSEKEESKNDSSSEIEESKNEGVEAEPIPNTVP 117

[Close]
BLAST of CSPI01G10270 vs. NCBI nr
Match: gi|778664834|ref|XP_011660364.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 81/120 (67.50%), Postives = 92/120 (76.67%), Query Frame = 1 

Query: 6   MADMESSINDLFIEDDDTNSSSSGSQSSDKSEANYSLPDQDNSAPLADEVVININDGEEE 65
           MA  ESSINDL  EDDDTNSSSSGSQS  KSEANYS PDQDN+ P A++V ININ+GEEE
Sbjct: 1   MAIKESSINDLSQEDDDTNSSSSGSQSRGKSEANYSFPDQDNNTPPAEDVFININEGEEE 60

Query: 66  DEEDEKDKEEERKHDSTSEKEEIKNDSTSEKEEEEYK-----EESNNDGVEAELIPDPVP 121
           +E +E   EE  K+DSTS+KEE KNDSTSEKEE +       EES N+GVEAE IP+ VP
Sbjct: 61  EEGEE---EEISKNDSTSKKEESKNDSTSEKEESKNDSSSEIEESKNEGVEAEPIPNTVP 117

[Close]
BLAST of CSPI01G10270 vs. NCBI nr
Match: gi|700209386|gb|KGN64482.1| (hypothetical protein Csa_1G058160 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 81/120 (67.50%), Postives = 92/120 (76.67%), Query Frame = 1 

Query: 6   MADMESSINDLFIEDDDTNSSSSGSQSSDKSEANYSLPDQDNSAPLADEVVININDGEEE 65
           MA  ESSINDL  EDDDTNSSSSGSQS  KSEANYS PDQDN+ P A++V ININ+GEEE
Sbjct: 1   MAIKESSINDLSQEDDDTNSSSSGSQSRGKSEANYSFPDQDNNTPPAEDVFININEGEEE 60

Query: 66  DEEDEKDKEEERKHDSTSEKEEIKNDSTSEKEEEEYK-----EESNNDGVEAELIPDPVP 121
           +E +E   EE  K+DSTS+KEE KNDSTSEKEE +       EES N+GVEAE IP+ VP
Sbjct: 61  EEGEE---EEISKNDSTSKKEESKNDSTSEKEESKNDSSSEIEESKNEGVEAEPIPNTVP 117

The following BLAST results are available for this feature:
BLAST of CSPI01G10270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G10270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUM9_CUCSA3.7e-2267.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058160 PE=4 SV=1[more]
BLAST of CSPI01G10270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G10270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778664834|ref|XP_011660364.1|5.3e-2267.50PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus][more]
gi|700209386|gb|KGN64482.1|5.3e-2267.50hypothetical protein Csa_1G058160 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10270.1CSPI01G10270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 64..91
scor