CSPI01G08140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G08140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 5129296 .. 5130206 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTCAGCAAGTGAGAAAGGGATCTATCCACTTGCAAAAGAAATTAAAGTCCCAAAATTATTCTTTGAAATTTTGAATTATGGAATCTCCCTTCAATCTTCTAATCAAATTATGTCACTAATCTCTCTCTCTCTTTCAAAGCAAAGAACCTCAACAAACACAGCTTATAAACATTATAAATCCAACTCAATTTCCTCTATGTTTCTTCATTCCATCCTTTTTTTTTTCTTCTTTTGCAATTGAATAAACAAAAATTCAACCAATCAATCAATTACCAAAGCTATGATCGGTAAAGAATCAAGATCCACGGAATCGCTATGTGAGAAGTCCATGTTGTTGGTAGCGAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCTAGGACGGCGAATAATGAACCAACCGCTGGATCATCTACGACCACGCGACGGCGATCGGGAGGAAATCCAGCGGCGACGCCTCTAATTCCGGGAAGTAAACGGCTGCAGGAGCCGCAGAGCCGAGCGAAGCCGATATACGTAACGAAGCCGGGCGGAGGTGGCTTCCAAATCGGACATGGATCGCCGTCGCCGAGGTATTCATCGTCGTCTTCTTCTTCTGTGATTTATGAAGAGAGTGATTTTGATGAGGGGAATGTGGATGGTTGGGCGTCTGAGTATATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACGATGAAGAAGCCAAAATCAATGGCTAAAAGTCGATTTCGTAGAACCAATTCCTCTGTTCTAAATTAGCTAGCTATAGCTTCTTTCCTCTCTATCTTTGAATTTTATCACTTTTTAAAAAAAAATTACGCAAGTGATGGTTCATTACTATGTGTTCATCTTCAAGTTCCACCATTTTAGGGTTTGGGATCCCATTTTTAATCTCTCA

mRNA sequence

ATGATCGGTAAAGAATCAAGATCCACGGAATCGCTATGTGAGAAGTCCATGTTGTTGGTAGCGAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCTAGGACGGCGAATAATGAACCAACCGCTGGATCATCTACGACCACGCGACGGCGATCGGGAGGAAATCCAGCGGCGACGCCTCTAATTCCGGGAAGTAAACGGCTGCAGGAGCCGCAGAGCCGAGCGAAGCCGATATACGTAACGAAGCCGGGCGGAGGTGGCTTCCAAATCGGACATGGATCGCCGTCGCCGAGGTATTCATCGTCGTCTTCTTCTTCTGTGATTTATGAAGAGAGTGATTTTGATGAGGGGAATGTGGATGGTTGGGCGTCTGAGTATATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACGATGAAGAAGCCAAAATCAATGGCTAAAAGTCGATTTCGTAGAACCAATTCCTCTGTTCTAAATTAG

Coding sequence (CDS)

ATGATCGGTAAAGAATCAAGATCCACGGAATCGCTATGTGAGAAGTCCATGTTGTTGGTAGCGAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCTAGGACGGCGAATAATGAACCAACCGCTGGATCATCTACGACCACGCGACGGCGATCGGGAGGAAATCCAGCGGCGACGCCTCTAATTCCGGGAAGTAAACGGCTGCAGGAGCCGCAGAGCCGAGCGAAGCCGATATACGTAACGAAGCCGGGCGGAGGTGGCTTCCAAATCGGACATGGATCGCCGTCGCCGAGGTATTCATCGTCGTCTTCTTCTTCTGTGATTTATGAAGAGAGTGATTTTGATGAGGGGAATGTGGATGGTTGGGCGTCTGAGTATATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACGATGAAGAAGCCAAAATCAATGGCTAAAAGTCGATTTCGTAGAACCAATTCCTCTGTTCTAAATTAG
Homology
[Close]
BLAST of CSPI01G08140 vs. TrEMBL
Match: A0A0A0LTD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045720 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-80
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60
           MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP
Sbjct: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60

Query: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD 120
           LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD
Sbjct: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD 120

Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 163
           GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN
Sbjct: 121 GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162

[Close]
BLAST of CSPI01G08140 vs. NCBI nr
Match: gi|700209178|gb|KGN64274.1| (hypothetical protein Csa_1G045720 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 3.4e-80
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60
           MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP
Sbjct: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60

Query: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD 120
           LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD
Sbjct: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSSVIYEESDFDEGNVD 120

Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 163
           GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN
Sbjct: 121 GWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162

The following BLAST results are available for this feature:
BLAST of CSPI01G08140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G08140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTD3_CUCSA2.4e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045720 PE=4 SV=1[more]
BLAST of CSPI01G08140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G08140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209178|gb|KGN64274.1|3.4e-80100.00hypothetical protein Csa_1G045720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G08140.1CSPI01G08140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G08140Cla008321Watermelon (97103) v1cpiwmB042
CSPI01G08140Csa1G045720Cucumber (Chinese Long) v2cpicuB000
CSPI01G08140MELO3C002227Melon (DHL92) v3.5.1cpimeB024
CSPI01G08140ClCG01G014220Watermelon (Charleston Gray)cpiwcgB024
CSPI01G08140Lsi02G003390Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G08140MELO3C002227.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G08140CsaV3_1G008100Cucumber (Chinese Long) v3cpicucB001
CSPI01G08140Cla97C01G013220Watermelon (97103) v2cpiwmbB010
CSPI01G08140Bhi08G001190Wax gourdcpiwgoB028
CSPI01G08140Cucsa.098100Cucumber (Gy14) v1cgycpiB107
CSPI01G08140CmaCh18G001400Cucurbita maxima (Rimu)cmacpiB394
CSPI01G08140Cp4.1LG20g02110Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G08140Cp4.1LG09g10580Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G08140CsGy1G008040Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G08140Melon (DHL92) v3.6.1cpimedB003
CSPI01G08140Melon (DHL92) v3.6.1cpimedB041
CSPI01G08140Cucumber (Gy14) v2cgybcpiB009
CSPI01G08140Cucumber (Gy14) v2cgybcpiB206
CSPI01G08140Cucumber (Gy14) v2cgybcpiB205
CSPI01G08140Silver-seed gourdcarcpiB0288
CSPI01G08140Silver-seed gourdcarcpiB0397
CSPI01G08140Silver-seed gourdcarcpiB0531
CSPI01G08140Silver-seed gourdcarcpiB0647
CSPI01G08140Silver-seed gourdcarcpiB1043
CSPI01G08140Cucumber (Chinese Long) v3cpicucB012
CSPI01G08140Cucumber (Chinese Long) v3cpicucB029
CSPI01G08140Cucumber (Chinese Long) v3cpicucB048
CSPI01G08140Cucumber (Chinese Long) v3cpicucB049
CSPI01G08140Watermelon (97103) v2cpiwmbB017
CSPI01G08140Watermelon (97103) v2cpiwmbB059
CSPI01G08140Watermelon (97103) v2cpiwmbB072
CSPI01G08140Watermelon (97103) v2cpiwmbB089
CSPI01G08140Wax gourdcpiwgoB003
CSPI01G08140Wax gourdcpiwgoB069
CSPI01G08140Wax gourdcpiwgoB088
CSPI01G08140Wild cucumber (PI 183967)cpicpiB002
CSPI01G08140Wild cucumber (PI 183967)cpicpiB035
CSPI01G08140Wild cucumber (PI 183967)cpicpiB036
CSPI01G08140Cucumber (Gy14) v1cgycpiB232
CSPI01G08140Cucumber (Gy14) v1cgycpiB312
CSPI01G08140Cucumber (Gy14) v1cgycpiB425
CSPI01G08140Cucurbita maxima (Rimu)cmacpiB063
CSPI01G08140Cucurbita maxima (Rimu)cmacpiB093
CSPI01G08140Cucurbita maxima (Rimu)cmacpiB218
CSPI01G08140Cucurbita maxima (Rimu)cmacpiB235
CSPI01G08140Cucurbita maxima (Rimu)cmacpiB698
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB056
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB095
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB204
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB222
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB383
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB689
CSPI01G08140Cucurbita moschata (Rifu)cmocpiB690
CSPI01G08140Cucumber (Chinese Long) v2cpicuB007
CSPI01G08140Cucumber (Chinese Long) v2cpicuB042
CSPI01G08140Cucumber (Chinese Long) v2cpicuB043
CSPI01G08140Melon (DHL92) v3.5.1cpimeB000
CSPI01G08140Melon (DHL92) v3.5.1cpimeB002
CSPI01G08140Melon (DHL92) v3.5.1cpimeB047
CSPI01G08140Melon (DHL92) v3.5.1cpimeB068
CSPI01G08140Watermelon (Charleston Gray)cpiwcgB001
CSPI01G08140Watermelon (Charleston Gray)cpiwcgB006
CSPI01G08140Watermelon (Charleston Gray)cpiwcgB063
CSPI01G08140Watermelon (Charleston Gray)cpiwcgB075
CSPI01G08140Watermelon (97103) v1cpiwmB000
CSPI01G08140Watermelon (97103) v1cpiwmB006
CSPI01G08140Watermelon (97103) v1cpiwmB036
CSPI01G08140Watermelon (97103) v1cpiwmB091
CSPI01G08140Cucurbita pepo (Zucchini)cpecpiB357
CSPI01G08140Cucurbita pepo (Zucchini)cpecpiB596
CSPI01G08140Cucurbita pepo (Zucchini)cpecpiB645
CSPI01G08140Bottle gourd (USVL1VR-Ls)cpilsiB028
CSPI01G08140Bottle gourd (USVL1VR-Ls)cpilsiB050
CSPI01G08140Bottle gourd (USVL1VR-Ls)cpilsiB066