CSPI01G07750 (gene) Wild cucumber (PI 183967)

NameCSPI01G07750
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description30S ribosomal protein S12, chloroplastic
LocationChr1 : 4910739 .. 4911122 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTGCTTATACGTGGTATTTGGCCATAATTTACAAGAACATTCCTTAATATATATTATAATTTGATACTTTAAAATTAATATTGTAAAAAATACAAAAATTGGGAATGCGGAAAGCGGTGACGAAAAGACAGAGTCCCATTCTTTGAAATGA

mRNA sequence

ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTGCTTATACGTGCGGTGACGAAAAGACAGAGTCCCATTCTTTGAAATGA

Coding sequence (CDS)

ATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCAAGATTTGAAATCACTGCTTATACGTGCGGTGACGAAAAGACAGAGTCCCATTCTTTGAAATGA
BLAST of CSPI01G07750 vs. Swiss-Prot
Match: RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-14
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1

Query: 32 TVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          T + SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITAY  G    ++ HS+
Sbjct: 35 TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSV 91

BLAST of CSPI01G07750 vs. Swiss-Prot
Match: RR12B_OLIPU (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-08
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query: 39 KGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          +G  +  +STITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Sbjct: 31 RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSV 80

BLAST of CSPI01G07750 vs. Swiss-Prot
Match: RR12_PINTH (30S ribosomal protein S12, chloroplastic OS=Pinus thunbergii GN=rps12 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-08
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G D   + HS+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIDHNLQEHSV 79

BLAST of CSPI01G07750 vs. Swiss-Prot
Match: RR12_PINKO (30S ribosomal protein S12, chloroplastic OS=Pinus koraiensis GN=rps12 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-08
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G D   + HS+
Sbjct: 33 TITPKKPNSALRKVARVRLTSGFEITAYIPGIDHNLQEHSV 73

BLAST of CSPI01G07750 vs. Swiss-Prot
Match: RR12_SOLBU (30S ribosomal protein S12, chloroplastic OS=Solanum bulbocastanum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G    ++ HS+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSV 79

BLAST of CSPI01G07750 vs. TrEMBL
Match: A0A0A0LR16_CUCSA (30S ribosomal protein S12-B OS=Cucumis sativus GN=Csa_1G044825 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.5e-31
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
          MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60

Query: 61 VAKVRLTSRFEITAYT 77
          VA+VRLTS FEITAYT
Sbjct: 61 VARVRLTSGFEITAYT 76

BLAST of CSPI01G07750 vs. TrEMBL
Match: U5CU38_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-22
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VAKVRLTSRFEITAYTCG-DEKTESHSL 88
           VA+VRLTS FEITAY  G    ++ HS+
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSV 101

BLAST of CSPI01G07750 vs. TrEMBL
Match: A0A0C5G6K8_IPOBA (Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-21
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 15 MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITA 74
          M SKELNEEPYEVKIS TVL SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITA
Sbjct: 1  MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75 YTCG-DEKTESHSL 88
          Y  G     + HS+
Sbjct: 61 YIPGIGHNLQEHSV 74

BLAST of CSPI01G07750 vs. TrEMBL
Match: A0A0D2V211_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G049000 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-21
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 1

Query: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
          +EEGRRFSNEEK+PMTSKELNEE YE         SGSKGDLSVNF TITPKKPNSALRK
Sbjct: 6  VEEGRRFSNEEKNPMTSKELNEESYE---------SGSKGDLSVNFFTITPKKPNSALRK 65

Query: 61 VAKVRLTSRFEITAYTCG-DEKTESHSL 88
          +AKVRLT  FEITAY       ++ HS+
Sbjct: 66 IAKVRLTYAFEITAYILDIGHNSQEHSI 84

BLAST of CSPI01G07750 vs. TrEMBL
Match: A0A0D2NAB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-21
Identity = 62/88 (70.45%), Postives = 66/88 (75.00%), Query Frame = 1

Query: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
          +EEGRRFSNEEKDPMTSKELNEEP              KGDLSVNFSTITPKKPNSALRK
Sbjct: 23 VEEGRRFSNEEKDPMTSKELNEEP--------------KGDLSVNFSTITPKKPNSALRK 82

Query: 61 VAKVRLTSRFEITAYTCG-DEKTESHSL 88
          VAKVRLTS FEITAY  G    ++ HS+
Sbjct: 83 VAKVRLTSGFEITAYIPGIGHNSQEHSV 96

BLAST of CSPI01G07750 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSV 79

BLAST of CSPI01G07750 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSV 79

BLAST of CSPI01G07750 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-08
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1

Query: 48 TITPKKPNSALRKVAKVRLTSRFEITAYTCG-DEKTESHSL 88
          TITPKKPNSALRKVA+VRLTS FEITAY  G     + HS+
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSV 79

BLAST of CSPI01G07750 vs. NCBI nr
Match: gi|700209137|gb|KGN64233.1| (30S ribosomal protein S12-B [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-31
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1

Query: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
          MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK
Sbjct: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60

Query: 61 VAKVRLTSRFEITAYT 77
          VA+VRLTS FEITAYT
Sbjct: 61 VARVRLTSGFEITAYT 76

BLAST of CSPI01G07750 vs. NCBI nr
Match: gi|548832465|gb|ERM95251.1| (hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda])

HSP 1 Score: 111.7 bits (278), Expect = 6.7e-22
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 1

Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRK
Sbjct: 23  VEEGRRFSSEEKDPITSKELNEEPYE---------SDSKGDLSVNFSTITPKKPNSALRK 82

Query: 61  VAKVRLTSRFEITAYTCG-DEKTESHSL 88
           VA+VRLTS FEITAY  G    ++ HS+
Sbjct: 83  VARVRLTSGFEITAYIPGIGHNSQEHSV 101

BLAST of CSPI01G07750 vs. NCBI nr
Match: gi|1009172427|ref|XP_015867265.1| (PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1

Query: 1   MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
           +EEG+RFSNEE D MTSKELNEEPYE+KIS  VL +G KGDLS+NFS I PKKPNSAL K
Sbjct: 17  VEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDLSINFSIIIPKKPNSALSK 76

Query: 61  VAKVRLTSRFEITAYTCG-DEKTESHSL 88
           VA+VRLT  FE+T +  G     + HS+
Sbjct: 77  VARVRLTFGFEMTTFIPGIGHNLQKHSV 104

BLAST of CSPI01G07750 vs. NCBI nr
Match: gi|772657602|ref|YP_009128437.1| (ribosomal protein S12 (chloroplast) [Ipomoea batatas])

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-21
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 15 MTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVAKVRLTSRFEITA 74
          M SKELNEEPYEVKIS TVL SGSKGDLSVNFSTITPKKPNSALRKVA+VRLTS FEITA
Sbjct: 1  MNSKELNEEPYEVKISCTVLKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITA 60

Query: 75 YTCG-DEKTESHSL 88
          Y  G     + HS+
Sbjct: 61 YIPGIGHNLQEHSV 74

BLAST of CSPI01G07750 vs. NCBI nr
Match: gi|763808727|gb|KJB75629.1| (hypothetical protein B456_012G049000, partial [Gossypium raimondii])

HSP 1 Score: 107.8 bits (268), Expect = 9.6e-21
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 1

Query: 1  MEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRK 60
          +EEGRRFSNEEK+PMTSKELNEE YE         SGSKGDLSVNF TITPKKPNSALRK
Sbjct: 6  VEEGRRFSNEEKNPMTSKELNEESYE---------SGSKGDLSVNFFTITPKKPNSALRK 65

Query: 61 VAKVRLTSRFEITAYTCG-DEKTESHSL 88
          +AKVRLT  FEITAY       ++ HS+
Sbjct: 66 IAKVRLTYAFEITAYILDIGHNSQEHSI 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RR12B_POPTR6.7e-1473.6830S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=... [more]
RR12B_OLIPU9.4e-0862.0030S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B ... [more]
RR12_PINTH9.4e-0873.1730S ribosomal protein S12, chloroplastic OS=Pinus thunbergii GN=rps12 PE=3 SV=1[more]
RR12_PINKO9.4e-0873.1730S ribosomal protein S12, chloroplastic OS=Pinus koraiensis GN=rps12 PE=3 SV=2[more]
RR12_SOLBU3.6e-0770.7330S ribosomal protein S12, chloroplastic OS=Solanum bulbocastanum GN=rps12-A PE=... [more]
Match NameE-valueIdentityDescription
A0A0A0LR16_CUCSA5.5e-3197.3730S ribosomal protein S12-B OS=Cucumis sativus GN=Csa_1G044825 PE=4 SV=1[more]
U5CU38_AMBTC4.7e-2271.59Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02071p00004290 PE=4 SV=... [more]
A0A0C5G6K8_IPOBA5.1e-2179.73Ribosomal protein S12 OS=Ipomoea batatas GN=rps12 PE=4 SV=1[more]
A0A0D2V211_GOSRA6.7e-2169.32Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G049000 PE=... [more]
A0A0D2NAB6_GOSRA8.8e-2170.45Uncharacterized protein OS=Gossypium raimondii GN=B456_005G100800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00065.13.4e-0870.73ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.4e-0870.73ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.13.4e-0870.73ATCG00905.1 ribosomal protein S12C[more]
Match NameE-valueIdentityDescription
gi|700209137|gb|KGN64233.1|7.9e-3197.3730S ribosomal protein S12-B [Cucumis sativus][more]
gi|548832465|gb|ERM95251.1|6.7e-2271.59hypothetical protein AMTR_s02071p00004290 [Amborella trichopoda][more]
gi|1009172427|ref|XP_015867265.1|5.6e-2165.91PREDICTED: 30S ribosomal protein S12, chloroplastic-like [Ziziphus jujuba][more]
gi|772657602|ref|YP_009128437.1|7.4e-2179.73ribosomal protein S12 (chloroplast) [Ipomoea batatas][more]
gi|763808727|gb|KJB75629.1|9.6e-2169.32hypothetical protein B456_012G049000, partial [Gossypium raimondii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G07750.1CSPI01G07750.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 51..66
score: 1.9E-9coord: 36..51
score: 1.9E-9coord: 67..86
score: 1.
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 48..75
score: 1.9
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 39..80
score: 2.4
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 52..59
scor
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 42..81
score: 1.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 44..80
score: 1.8
NoneNo IPR availablePANTHERPTHR11652:SF17SUBFAMILY NOT NAMEDcoord: 48..75
score: 1.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None