CSPI01G05890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G05890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr1 : 3713890 .. 3715676 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTACGTCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCATTAGATGCAGCTATTCAAGAAATTCTGTTTGAAGAAAAGCGTCTTGGCATCAACTCTACTAAACAATCTGATGTTGTCCTTGCTAGCACATACACTCCCAGCAGAGCCGCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTAGTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGCCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAATTTTTACCAAACATGGTTCCTCATCTGTTGTTGCTGCGACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCCGCTCTGGCTGTTTCATCAGGTAATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACGTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGCTGATGGTAATTGTATGAACATCTCTCATACTGGTACCATTGATACTCCCAGTGTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTGGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCTTCTTCCATCTCTGCTTCGGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCCTCTGAAAAACTTCGTCATTTAATTTCTGTTAACAATTTGACTAATCTTACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTATCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATTTAGTGCATTCTGATATTTGGGGTCCTGCCCCAATTACTACTGTTCATGGTTATCGCTACTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACTGATAATGTTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGCTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTTCTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACGTGCCCGTCTCTGTTGTTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCTTTCTCTAGTCCTCAATCTTTCTTTACAAATACATCTGTTGA

mRNA sequence

ATGGGATTACGTCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCATTAGATGCAGCTATTCAAGAAATTCTGTTTGAAGAAAAGCGTCTTGGCATCAACTCTACTAAACAATCTGATGTTGTCCTTGCTAGCACATACACTCCCAGCAGAGCCGCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTAGTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGCCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAATTTTTACCAAACATGGTTCCTCATCTGTTGTTGCTGCGACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCCGCTCTGGCTGTTTCATCAGGTAATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACGTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGCTGATGGTAATTGTATGAACATCTCTCATACTGGTACCATTGATACTCCCAGTGTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTGGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCTTCTTCCATCTCTGCTTCGGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCCTCTGAAAAACTTCGTCATTTAATTTCTGTTAACAATTTGACTAATCTTACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTATCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATTTAGTGCATTCTGATATTTGGGGTCCTGCCCCAATTACTACTGTTCATGGTTATCGCTACTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACTGATAATGTTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGCTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTTCTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACGTGCCCGTCTCTGTTGTTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATTCCTCAATCTTTCTTTACAAATACATCTGTTGA

Coding sequence (CDS)

ATGGGATTACGTCCAGAATATGAATCTGTTAGAGCTGCTTTACTACACCGGAATCCCTTACCCTCATTAGATGCAGCTATTCAAGAAATTCTGTTTGAAGAAAAGCGTCTTGGCATCAACTCTACTAAACAATCTGATGTTGTCCTTGCTAGCACATACACTCCCAGCAGAGCCGCAAATATGTTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTAGTAACTGTCCTAAAATAGAGTGCAGGTACTGCCATAAACATGGCCACATTCTGGATAACTGCCCTACCAGACCACCCCGACCTCCTGGCACTTCCACAAAAGAGAAAATTTTTACCAAACATGGTTCCTCATCTGTTGTTGCTGCGACCTCGGATGATTCATCCCTCATTCAGATAAGTGATCTTCAGAGCTTATTGAATCAACTAATTTCATCATCCTCCGCTCTGGCTGTTTCATCAGGTAATCGATGGCTTCTTGATTCTGCCTGTTGTAATCATATGACCTCTGACGTTTCTCTTATGTCTACTTCTAGCCCTACAAAATCTTTACCTCCTATTTATGCTGCTGATGGTAATTGTATGAACATCTCTCATACTGGTACCATTGATACTCCCAGTGTACATCTTCCCCATACTTACTGTGTTCCTAACCTGACCTTTAATCTAGTGTCTGTTGGTCAATTATGTGATCTGGGCTTAAATGTTTCATTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGGGACAGACGATTGGAACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCACATCACTTCGGGTTTCATCTCCTTCTTCCATCTCTGCTTCGGTCACTGATTCTGACACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCCTCTGAAAAACTTCGTCATTTAATTTCTGTTAACAATTTGACTAATCTTACTAAGTTTGTTCCTTTTAATTGTTTGAATTGCAAACTTGCTAAACAACCTGCCTTATCTTTTTCTCAATCCATCTCTAATTGTGATAAACCTTTTGATTTAGTGCATTCTGATATTTGGGGTCCTGCCCCAATTACTACTGTTCATGGTTATCGCTACTATGTTTTATTCATTGATGACTACTCTCGATTTACATGGATTTACTTTCTAAAACATCGTTCTGAATTATCTCGCACATATATTGAGTTTGCTAACATGATTCGCACTCAATTTTCCTCTCCCATCAAAATTCTTCGCACTGATAATGTTTTGGAATATAAAGATTCCATCCTTCTTTCTTTTCTTTCCCAACAGGGCACTATTGTTCAGCGCTCTTGCCCTCATACCTCTCAACAAAATGGACGTGCTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTTCTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTATATACAATCAATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACGTGCCCGTCTCTGTTGTTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATTCCTCAATCTTTCTTTACAAATACATCTGTTGA
Homology
[Close]
BLAST of CSPI01G05890 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.5e-45
Identity = 149/573 (26.00%), Postives = 252/573 (43.98%), Query Frame = 1 

Query: 3   LRPEYESVRAALLHRNPLPSLDAAIQEILFEEK-RLGINSTKQSDVVLASTYTPSRAANM 62
           L   Y+++   +LH      L      +L  EK R    +  Q+ +      +  R++N 
Sbjct: 152 LPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNN 211

Query: 63  FCKNCKLSGHKFSNCPKIE-CRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSVV 122
           + ++      K  +  ++  C  C++ GH   +CP  P +  G ++ +K           
Sbjct: 212 YGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPN-PRKGKGETSGQK----------- 271

Query: 123 AATSDDSSLIQISDLQSLLNQLISSSSALAVSSG-NRWLLDSACCNHMTSDVSLM----- 182
              +DD++   + +  +++  +      + +S   + W++D+A  +H T    L      
Sbjct: 272 ---NDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVA 331

Query: 183 ----STSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCD 242
               +      S   I      C+  +   T+    V       VP+L  NL+S   L  
Sbjct: 332 GDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRH-----VPDLRMNLISGIALDR 391

Query: 243 LGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHL 302
            G    F+    ++   +    I  G   G L+  T+  +     ++A+  +     WH 
Sbjct: 392 DGYESYFANQKWRLT--KGSLVIAKGVARGTLYR-TNAEICQ-GELNAAQDEISVDLWHK 451

Query: 303 RLGHASSEKLRHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFDLVHSD 362
           R+GH S + L+ L   + ++         C  C   KQ  +SF  S        DLV+SD
Sbjct: 452 RMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSD 511

Query: 363 IWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSSPIKIL 422
           + GP  I ++ G +Y+V FIDD SR  W+Y LK + ++ + + +F  ++  +    +K L
Sbjct: 512 VCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRL 571

Query: 423 RTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPE 482
           R+DN  EY       + S  G   +++ P T Q NG AER +R I++ VR++L  A  P+
Sbjct: 572 RSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPK 631

Query: 483 KFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKL 542
            FWGEA  T+ Y INR PS  L    P          YS LKVFG   F  +   +  KL
Sbjct: 632 SFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKL 691

Query: 543 EPRARLCCFLGYGTEHKGFRCWDPLSNRLRISR 564
           + ++  C F+GYG E  G+R WDP+  ++  SR
Sbjct: 692 DDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 700

[Close]
BLAST of CSPI01G05890 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-39
Identity = 129/502 (25.70%), Postives = 227/502 (45.22%), Query Frame = 1 

Query: 78  KIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSVVAATSDDSSLIQISDLQS 137
           K++C +C + GHI  +C     R      KE          V  ATS   +         
Sbjct: 229 KVKCHHCGREGHIKKDC-FHYKRILNNKNKEN------EKQVQTATSHGIAF-------- 288

Query: 138 LLNQLISSSSALAVSSGNRWLLDSACCNHMTSDVSLMSTSSPTKSLPPI---YAADGNCM 197
               ++   +  +V     ++LDS   +H+ +D SL + S   + +PP+    A  G  +
Sbjct: 289 ----MVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDS--VEVVPPLKIAVAKQGEFI 348

Query: 198 NISHTGTIDTPSVH---LPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQ 257
             +  G +   + H   L           NL+SV +L + G+++ F  +G  +       
Sbjct: 349 YATKRGIVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV 408

Query: 258 TIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQ-WHLRLGHASSEKL-----RHLIS 317
              +G        L ++ V +  + S +    + ++ WH R GH S  KL     +++ S
Sbjct: 409 VKNSGM-------LNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFS 468

Query: 318 VNNLTNLTKFVPFNCLNCKLAKQPALSFSQ--SISNCDKPFDLVHSDIWGPAPITTVHGY 377
             +L N  +     C  C   KQ  L F Q    ++  +P  +VHSD+ GP    T+   
Sbjct: 469 DQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDK 528

Query: 378 RYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSIL 437
            Y+V+F+D ++ +   Y +K++S++   + +F       F+  +  L  DN  EY  + +
Sbjct: 529 NYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM 588

Query: 438 LSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYT 497
             F  ++G     + PHT Q NG +ER  R I +  R ++  A   + FWGEA LT+ Y 
Sbjct: 589 RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYL 648

Query: 498 INRLPSSVLQNTS--PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPRARLCCFLG 557
           INR+PS  L ++S  P+E  +   P    L+VFG+  +V +  ++  K + ++    F+G
Sbjct: 649 INRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVG 699

Query: 558 YGTEHKGFRCWDPLSNRLRISR 564
           Y  E  GF+ WD ++ +  ++R
Sbjct: 709 Y--EPNGFKLWDAVNEKFIVAR 699

[Close]
BLAST of CSPI01G05890 vs. Swiss-Prot
Match: YN11B_YEAST (Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-NL1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-19
Identity = 88/352 (25.00%), Postives = 153/352 (43.47%), Query Frame = 1 

Query: 206 SVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFEL 265
           S+ + HT   PN+ ++L+S+ +L  + +   F+ N  +  D   G  +    K G  F  
Sbjct: 513 SIKVLHT---PNIAYDLLSLNELAAVDITACFTKNVLERSD---GTVLAPIVKYGD-FYW 572

Query: 266 TSLRVSSPSSISASV-----TDSDTYQW-----HLRLGHASSEKLRHLISVNNLT----- 325
            S +   PS+IS        T   T ++     H  L HA+++ +R+ +  N +T     
Sbjct: 573 VSKKYLLPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNES 632

Query: 326 --NLTKFVPFNCLNCKLAKQPALSFSQS----ISNCDKPFDLVHSDIWGPAPITTVHGYR 385
             + +  + + C +C + K       +       N  +PF  +H+DI+GP          
Sbjct: 633 DVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPS 692

Query: 386 YYVLFIDDYSRFTWIYFLKHRSE--LSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSI 445
           Y++ F D+ ++F W+Y L  R E  +   +      I+ QF + + +++ D   EY +  
Sbjct: 693 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 752

Query: 446 LLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVY 505
           L  FL + G     +    S+ +G AER +R +LD  R  L  +  P   W  A   S  
Sbjct: 753 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 812

Query: 506 TINRLPSSVLQNTS-PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPR 534
             N L S   + ++     L G+  D S L  FG    V  H + ++K+ PR
Sbjct: 813 VRNSLASPKSKKSARQHAGLAGL--DISTLLPFGQPVIVNDH-NPNSKIHPR 854

[Close]
BLAST of CSPI01G05890 vs. Swiss-Prot
Match: YM13B_YEAST (Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR1 PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-19
Identity = 88/352 (25.00%), Postives = 153/352 (43.47%), Query Frame = 1 

Query: 206 SVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFEL 265
           S+ + HT   PN+ ++L+S+ +L  + +   F+ N  +  D   G  +    K G  F  
Sbjct: 513 SIKVLHT---PNIAYDLLSLNELAAVDITACFTKNVLERSD---GTVLAPIVKYGD-FYW 572

Query: 266 TSLRVSSPSSISASV-----TDSDTYQW-----HLRLGHASSEKLRHLISVNNLT----- 325
            S +   PS+IS        T   T ++     H  L HA+++ +R+ +  N +T     
Sbjct: 573 VSKKYLLPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNES 632

Query: 326 --NLTKFVPFNCLNCKLAKQPALSFSQS----ISNCDKPFDLVHSDIWGPAPITTVHGYR 385
             + +  + + C +C + K       +       N  +PF  +H+DI+GP          
Sbjct: 633 DVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPS 692

Query: 386 YYVLFIDDYSRFTWIYFLKHRSE--LSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSI 445
           Y++ F D+ ++F W+Y L  R E  +   +      I+ QF + + +++ D   EY +  
Sbjct: 693 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 752

Query: 446 LLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVY 505
           L  FL + G     +    S+ +G AER +R +LD  R  L  +  P   W  A   S  
Sbjct: 753 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 812

Query: 506 TINRLPSSVLQNTS-PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPR 534
             N L S   + ++     L G+  D S L  FG    V  H + ++K+ PR
Sbjct: 813 VRNSLASPKSKKSARQHAGLAGL--DISTLLPFGQPVIVNDH-NPNSKIHPR 854

[Close]
BLAST of CSPI01G05890 vs. Swiss-Prot
Match: YB11B_YEAST (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-19
Identity = 88/352 (25.00%), Postives = 153/352 (43.47%), Query Frame = 1 

Query: 206 SVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFEL 265
           S+ + HT   PN+ ++L+S+ +L  + +   F+ N  +  D   G  +    K G  F  
Sbjct: 513 SIKVLHT---PNIAYDLLSLNELAAVDITACFTKNVLERSD---GTVLAPIVKYGD-FYW 572

Query: 266 TSLRVSSPSSISASV-----TDSDTYQW-----HLRLGHASSEKLRHLISVNNLT----- 325
            S +   PS+IS        T   T ++     H  L HA+++ +R+ +  N +T     
Sbjct: 573 VSKKYLLPSNISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNES 632

Query: 326 --NLTKFVPFNCLNCKLAKQPALSFSQS----ISNCDKPFDLVHSDIWGPAPITTVHGYR 385
             + +  + + C +C + K       +       N  +PF  +H+DI+GP          
Sbjct: 633 DVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPS 692

Query: 386 YYVLFIDDYSRFTWIYFLKHRSE--LSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSI 445
           Y++ F D+ ++F W+Y L  R E  +   +      I+ QF + + +++ D   EY +  
Sbjct: 693 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 752

Query: 446 LLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVY 505
           L  FL + G     +    S+ +G AER +R +LD  R  L  +  P   W  A   S  
Sbjct: 753 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 812

Query: 506 TINRLPSSVLQNTS-PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPR 534
             N L S   + ++     L G+  D S L  FG    V  H + ++K+ PR
Sbjct: 813 VRNSLASPKSKKSARQHAGLAGL--DISTLLPFGQPVIVNDH-NPNSKIHPR 854

[Close]
BLAST of CSPI01G05890 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 2.1e-163
Identity = 297/571 (52.01%), Postives = 376/571 (65.85%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPSRAAN 60
           M L  +YE VRA+LLH+ PLP+L+ A+  +  EE RLG+   K       ST     +  
Sbjct: 38  MALTDDYEPVRASLLHQEPLPTLEDALPRLQSEETRLGLLCAKPDMAFAVST-----SKG 97

Query: 61  MFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSVV 120
            +C NC+ SGH +  CP IEC +C K GHI  NC   P R P  S+   +F ++      
Sbjct: 98  NYCGNCRQSGHVYIECPIIECHHCRKKGHIAPNC---PTRDPNRSST--LFCRYCK---- 157

Query: 121 AATSDDSSLIQISDLQSLLNQLISSSSALAVSSGNRWLLDSACCNHMTSDVSLMSTSSPT 180
                            L+  +I   +        RW  DSACCNHMTS   + S  S  
Sbjct: 158 -----------------LVGHIIDHCNT-------RWYFDSACCNHMTSASHVFSDLSSR 217

Query: 181 KSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPN 240
             +  I+ ADG+ M +SH G I TPS+ +P  Y +P L FNLVSVGQLCDLG  ++FS  
Sbjct: 218 DRISHIHTADGSLMEVSHKGPISTPSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSST 277

Query: 241 GCQVQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKL 300
           GC VQDP+TG+ IG GRK+GR+FELT+L V S +++ A+ T S  + WH RLGH S  KL
Sbjct: 278 GCSVQDPRTGKIIGNGRKIGRMFELTTLHVPSSNNLCAASTPSSIHLWHQRLGHTSLSKL 337

Query: 301 RHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFDLVHSDIWGPAPITTV 360
           R LIS+ +L ++ K    +C  C+ AKQ AL F+ S S+    FDLVH D+WGPAP  T+
Sbjct: 338 RPLISMGSLGSI-KEDKLDCTACQTAKQAALPFNDSTSSSVSLFDLVHYDVWGPAPTPTM 397

Query: 361 HGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSSPIKILRTDNVLEYKD 420
            G RY+++FIDD+SRFTWIY +K RSE+ + YI FA MIRTQFS  IK  R DN  EY+D
Sbjct: 398 GGCRYFIIFIDDFSRFTWIYLMKSRSEIPQIYINFATMIRTQFSKCIKTFRRDNASEYRD 457

Query: 421 SILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTS 480
           S LL FL++QGT  + SCP TSQQNGRAERKHRHILDS+RA+L+S+SCPE+ WGEAALT+
Sbjct: 458 SKLLHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTA 517

Query: 481 VYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPRARLCCFL 540
           VY INRLPSSVL + +PFE+L+G  P Y  L+VFG ACFVLL PHE+ KL+PRARLCCFL
Sbjct: 518 VYVINRLPSSVLGDKTPFERLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFL 569

Query: 541 GYGTEHKGFRCWDPLSNRLRISRHSSIFLYK 572
           GYGTEHKG+R WDP+S  +RISRH   + +K
Sbjct: 578 GYGTEHKGYRVWDPISQCIRISRHVVFWEHK 569

[Close]
BLAST of CSPI01G05890 vs. TrEMBL
Match: A0A151UDP3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047550 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 1.3e-160
Identity = 298/555 (53.69%), Postives = 374/555 (67.39%), Query Frame = 1 

Query: 40  NSTKQSDVVLAST--YTPSRAANMFCKNCKLSGHKFSNCPK--------IECRYCHKHGH 99
           + TK  + ++A T  Y P RA+          GH   NCP         + CRYC   GH
Sbjct: 29  DGTKLIEFLMALTDDYEPVRASLK-------KGHIAPNCPTRGPNRSSTLFCRYCKLAGH 88

Query: 100 ILDNCPTRPPRPPGTSTKEKIFTKHGSSSVVAAT-------SDDSSLIQISDLQSLLNQL 159
           I+D+CPTRPPR   T ++ +      S  V+A T       SD  +L+ + DL+S+L Q+
Sbjct: 89  IIDHCPTRPPRSAHTRSQRRSAGSSSSRPVLATTPTNEGQSSDAQALVSVGDLESILKQV 148

Query: 160 ISSSS-----ALAVSSGN-RWLLDSACCNHMTSDVSLMSTSSPTKSLPPIYAADGNCMNI 219
           +S SS     ALA + GN RW  DS CCNHMTS   + S  S    +  I+ ADG+ M +
Sbjct: 149 LSISSSNPPTALATTPGNTRWYFDSTCCNHMTSSSHVFSDLSSRDRISHIHTADGSLMEV 208

Query: 220 SHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQTIGTG 279
           SH G I  PS+ +P  Y +P L FNLVSVGQLCDLG  ++FS  GC VQDP+TG+ IG G
Sbjct: 209 SHKGPISIPSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSSTGCSVQDPRTGKIIGNG 268

Query: 280 RKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHLISVNNLTNLTKFV 339
           RK+GR+FELT+L V S +++ A+ T S  + WH  LGH S  KLR LIS+ +L ++ K  
Sbjct: 269 RKIGRMFELTTLHVPSSNNLCATSTPSSIHLWHQGLGHTSLSKLRPLISMGSLGSI-KED 328

Query: 340 PFNCLNCKLAKQPALSFSQSISNCDKPFDLVHSDIWGPAPITTVHGYRYYVLFIDDYSRF 399
             +C  C+  KQ AL F+ SIS+   PFDLVHSD+WG AP  T+ G RY+V+ IDD+SRF
Sbjct: 329 KLDCTACQTTKQAALLFNDSISSSISPFDLVHSDVWGSAPTPTMGGCRYFVILIDDFSRF 388

Query: 400 TWIYFLKHRSELSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSILLSFLSQQGTIVQR 459
           TWIY +K RSE+ + YI FA MIRTQFS  IK  R DN  EY+DS LL FL++QGT  + 
Sbjct: 389 TWIYLMKSRSEIPQIYINFATMIRTQFSKCIKTFRRDNASEYRDSKLLHFLAEQGTTSEF 448

Query: 460 SCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTS 519
           SCP TSQQNGRAERKHRHILDS+RA+L+S+SCPE+ WGEAALT+VY INRLPSSVL N +
Sbjct: 449 SCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYVINRLPSSVLGNKT 508

Query: 520 PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPRARLCCFLGYGTEHKGFRCWDPLS 572
           PFE L+G  P Y  L+VFG ACFVLL PHE+ KL+PRARLCCFLGYGTEHKG+R WDP+S
Sbjct: 509 PFECLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPIS 568

[Close]
BLAST of CSPI01G05890 vs. TrEMBL
Match: A5BVC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 5.7e-129
Identity = 252/588 (42.86%), Postives = 357/588 (60.71%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLAST-YTPSRAA 60
           M L  ++E +R  LL+R+  PSLD A+ E++ EE RL     +    +LA T  TP    
Sbjct: 177 MSLHKDFEPIRGQLLNRSXAPSLDTAVNELVREEARLATLQAQNKLNILAITPSTPLIEQ 236

Query: 61  NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTR----------PPRPPGTSTKEK 120
                +   S ++     K  C YC + GH ++ C  R           P PP  ST + 
Sbjct: 237 PQQLGDFSGSNNRRKQNNKKFCNYCKRPGHTIETCYRRNKSTATVANTAPTPPTVSTSQS 296

Query: 121 IFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSALAVSSGNRWLLDSACCNHMTS 180
                 S S +  +S +   I    ++ + N  +S++ ++       WL DSACCNHMT 
Sbjct: 297 ------SGSTINLSSTELQEIIAQAVRMVGNASLSTALSVLPGKSQTWLFDSACCNHMTP 356

Query: 181 DVSLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLC 240
             SL +   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVGQL 
Sbjct: 357 HSSLFTNLDPAPHPLNIHIADGSTMHGNSLGFVSTSTLSVPGVFHVPDLSYNLCSVGQLA 416

Query: 241 DLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVS--SPSSISASVTDSDTYQ 300
           +LG  + F  +GC VQD +TGQ +GTG +VGR+F + +L +   +P S++A+     +  
Sbjct: 417 ELGYRLIFXYSGCIVQDXRTGQELGTGPRVGRMFPVNNLHLPPVAPVSVAAATAAVSSLP 476

Query: 301 ----WHLRLGHASSEKLRHLISVNNLTNLTKFV-------PFNCLNCKLAKQPALSFSQS 360
               WH RLGHA S +++ L+S   L ++++ +        F+C +C+L KQPAL F+ S
Sbjct: 477 SLALWHSRLGHAPSSRVQQLVSRGLLGSVSRGLLGSVSKDNFDCTSCQLGKQPALPFNNS 536

Query: 361 ISNCDKPFDLVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFA 420
            S     F+L+HSD+WGP+P+ ++ G RY+V+FIDDYSR++WI+ +K RSE+   Y  FA
Sbjct: 537 DSISKSIFELIHSDVWGPSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFA 596

Query: 421 NMIRTQFSSPIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHIL 480
            M+ TQFS  IK  R+DN LEY        L   GTI   +CP TSQQNGRAERK RHIL
Sbjct: 597 KMVETQFSKRIKTFRSDNALEYTQHAFQXLLHSYGTIHHLTCPGTSQQNGRAERKLRHIL 656

Query: 481 DSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGS 540
           D VRALLLSA  P  FWGEA+L +V+ INR+PS+V+ N +P+E+L+G  P+Y  L+ FGS
Sbjct: 657 DXVRALLLSAKIPAPFWGEASLHAVHAINRIPSTVIHNQTPYERLFGSPPNYHHLRSFGS 716

Query: 541 ACFVLLHPHEHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
            CFVLL PHEHNKLEPR+RLCCFLGYG   KG+RC+DP+S+RLR+SR+
Sbjct: 717 XCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRN 758

[Close]
BLAST of CSPI01G05890 vs. TrEMBL
Match: A5AF15_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021305 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 5.7e-129
Identity = 253/579 (43.70%), Postives = 362/579 (62.52%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLG-INSTKQSDVVLASTYTPSRAA 60
           M L  ++E +   LL+R+P PSLD A+ E++ EE RL  + + K+ +V+  +  TP    
Sbjct: 149 MSLHKDFEPIHGQLLNRSPAPSLDTAVNELVREEARLATLQAQKKFNVLAITPSTPLIEQ 208

Query: 61  NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSV 120
                +   S ++     K  C YC + GH ++ C  R       +  E       S+SV
Sbjct: 209 PQQSGDSYGSSNRRKQTNKKFCNYCKRPGHTIETCYRRNKSTAAIANIEPT-PPMASTSV 268

Query: 121 VAATSDDSSLIQISDLQSLLNQLI------SSSSALAVSSGNR--WLLDSACCNHMTSDV 180
            + +S  +  +  ++LQ ++ Q I      S S+AL++  G    W  DSACCNHMT   
Sbjct: 269 ESKSSRSTINLSSTELQEIIAQAIRMAGNASLSTALSILPGKSQTWFFDSACCNHMTPHS 328

Query: 181 SLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDL 240
           SL S   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVG L +L
Sbjct: 329 SLFSKLDPAPHPLNIHIADGSTMHGNCLGFVSTSNLSVPGVFHVPDLSYNLFSVGXLAEL 388

Query: 241 GLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSIS-----ASVTDSDTY 300
           G ++ F  +GC VQDP+TGQ + TG +VGR+F + +L +   + +S     A+V+   ++
Sbjct: 389 GYHLIFYYSGCIVQDPRTGQELXTGPRVGRMFPVINLHLPPVAPVSIATAAAAVSSLPSF 448

Query: 301 Q-WHLRLGHASSEKLRHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFD 360
             WH RLGHASS +++ L+S   L +++K + F C +C++ KQPAL F+ S S     F+
Sbjct: 449 ALWHSRLGHASSSRVQQLVSRGLLGSVSKDI-FYCTSCQIGKQPALPFNNSESISHSIFE 508

Query: 361 LVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSS 420
           L+HSD+WGP+P+ ++ G RY+V+FIDDYSR++WI+ +K RSE+   Y  FA MI TQFS 
Sbjct: 509 LIHSDVWGPSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFAKMIETQFSK 568

Query: 421 PIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLS 480
            IK  R+DN LEY      + L   GT+   +CP TSQQNGR ERK RHILD+VRALLLS
Sbjct: 569 RIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQNGRVERKLRHILDTVRALLLS 628

Query: 481 ASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPH 540
           A  P  FWGEAAL +V+ INR+PS+V+ N +P+E L+G  P Y  L+ FGSACF LL  H
Sbjct: 629 AKIPAPFWGEAALHAVHAINRIPSAVIHNQTPYEHLFGSPPVYHHLRSFGSACFFLLQSH 688

Query: 541 EHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
           EHNKLEPR+RLCCFLGYG   KG+RC+DP+S+RLR+SR+
Sbjct: 689 EHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRN 725

[Close]
BLAST of CSPI01G05890 vs. TrEMBL
Match: A5BT22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035210 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.3e-125
Identity = 251/581 (43.20%), Postives = 349/581 (60.07%), Query Frame = 1 

Query: 1    MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLAST-YTPSRAA 60
            M L  ++E +R  LL+R+P PSLD A+ E++ EE  L     +    VLA T  TP    
Sbjct: 1300 MSLHKDFEPIRGQLLNRSPAPSLDTAVNELVREEAXLATLQAQNKFNVLAITPSTPLIEQ 1359

Query: 61   NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTR----------PPRPPGTSTKEK 120
                 +   S ++     K  C YC + GH ++ C  R           P PP  ST  K
Sbjct: 1360 PQQSGDSYGSSNRRKQTNKKFCNYCKRPGHTIETCYRRNKSTAAVANIEPTPPMASTSVK 1419

Query: 121  IFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSALAVSSGNRWLLDSACCNHMTS 180
                  S S +  +S +   I    ++   N  +S++ ++       WL DSAC NHMT 
Sbjct: 1420 ---SKSSGSTINLSSTELQEIXAQAVRMAGNASLSTALSVLPGKSQTWLFDSACXNHMTP 1479

Query: 181  DVSLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLC 240
              SL S   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVGQL 
Sbjct: 1480 HSSLFSKLDPAPHPLNIHIADGSTMHGNSLGFVSTSNLSVPGVFHVPDLSYNLCSVGQLA 1539

Query: 241  DLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVS--SPSSISASVTDSDTYQ 300
            +LG  + F  +GC VQDP+TG  +GTG +VG +F +++L +   +P SI+ +     +  
Sbjct: 1540 ELGYRLIFXYSGCIVQDPRTGXELGTGPRVGXMFPVSNLHLPPVAPVSIATAAAAVSSLP 1599

Query: 301  ----WHLRLGHASSEKLRHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKP 360
                 H RLGH SS +++ L+S   L + +K + F C +C L KQPAL F+   S  +  
Sbjct: 1600 SLALXHSRLGHXSSSRVQQLVSRGLLGSXSKDI-FXCTSCXLXKQPALPFNNXESISNSI 1659

Query: 361  FDLVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQF 420
            F+L+HSD+WGP+P+ ++   RY+V+FIDDYSR++WI+ +K RSE+   Y  FA MI TQF
Sbjct: 1660 FELIHSDVWGPSPVASIGXSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFAKMIETQF 1719

Query: 421  SSPIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALL 480
            S  IK  R+DN LEY      + L   GT+   +CP TSQQNGRAERK RHILD+VRALL
Sbjct: 1720 SKRIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQNGRAERKLRHILDTVRALL 1779

Query: 481  LSASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLH 540
            LSA  P  FWGEAAL +V+ INR+PS+V+ N +P+E+L+G  P Y  L+ FGSACFVLL 
Sbjct: 1780 LSAKIPAPFWGEAALHAVHAINRIPSAVIHNQTPYERLFGSPPVYHHLRSFGSACFVLLQ 1839

Query: 541  PHEHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
             HEHNKLEPR+RLCCFLGYG   KG+RC+DP+S+ LR+SR+
Sbjct: 1840 SHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHXLRVSRN 1876

[Close]
BLAST of CSPI01G05890 vs. NCBI nr
Match: gi|1012344626|gb|KYP55818.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 583.9 bits (1504), Expect = 3.0e-163
Identity = 297/571 (52.01%), Postives = 376/571 (65.85%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLASTYTPSRAAN 60
           M L  +YE VRA+LLH+ PLP+L+ A+  +  EE RLG+   K       ST     +  
Sbjct: 38  MALTDDYEPVRASLLHQEPLPTLEDALPRLQSEETRLGLLCAKPDMAFAVST-----SKG 97

Query: 61  MFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSVV 120
            +C NC+ SGH +  CP IEC +C K GHI  NC   P R P  S+   +F ++      
Sbjct: 98  NYCGNCRQSGHVYIECPIIECHHCRKKGHIAPNC---PTRDPNRSST--LFCRYCK---- 157

Query: 121 AATSDDSSLIQISDLQSLLNQLISSSSALAVSSGNRWLLDSACCNHMTSDVSLMSTSSPT 180
                            L+  +I   +        RW  DSACCNHMTS   + S  S  
Sbjct: 158 -----------------LVGHIIDHCNT-------RWYFDSACCNHMTSASHVFSDLSSR 217

Query: 181 KSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPN 240
             +  I+ ADG+ M +SH G I TPS+ +P  Y +P L FNLVSVGQLCDLG  ++FS  
Sbjct: 218 DRISHIHTADGSLMEVSHKGPISTPSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSST 277

Query: 241 GCQVQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKL 300
           GC VQDP+TG+ IG GRK+GR+FELT+L V S +++ A+ T S  + WH RLGH S  KL
Sbjct: 278 GCSVQDPRTGKIIGNGRKIGRMFELTTLHVPSSNNLCAASTPSSIHLWHQRLGHTSLSKL 337

Query: 301 RHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFDLVHSDIWGPAPITTV 360
           R LIS+ +L ++ K    +C  C+ AKQ AL F+ S S+    FDLVH D+WGPAP  T+
Sbjct: 338 RPLISMGSLGSI-KEDKLDCTACQTAKQAALPFNDSTSSSVSLFDLVHYDVWGPAPTPTM 397

Query: 361 HGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSSPIKILRTDNVLEYKD 420
            G RY+++FIDD+SRFTWIY +K RSE+ + YI FA MIRTQFS  IK  R DN  EY+D
Sbjct: 398 GGCRYFIIFIDDFSRFTWIYLMKSRSEIPQIYINFATMIRTQFSKCIKTFRRDNASEYRD 457

Query: 421 SILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTS 480
           S LL FL++QGT  + SCP TSQQNGRAERKHRHILDS+RA+L+S+SCPE+ WGEAALT+
Sbjct: 458 SKLLHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTA 517

Query: 481 VYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPRARLCCFL 540
           VY INRLPSSVL + +PFE+L+G  P Y  L+VFG ACFVLL PHE+ KL+PRARLCCFL
Sbjct: 518 VYVINRLPSSVLGDKTPFERLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFL 569

Query: 541 GYGTEHKGFRCWDPLSNRLRISRHSSIFLYK 572
           GYGTEHKG+R WDP+S  +RISRH   + +K
Sbjct: 578 GYGTEHKGYRVWDPISQCIRISRHVVFWEHK 569

[Close]
BLAST of CSPI01G05890 vs. NCBI nr
Match: gi|1012366229|gb|KYP77410.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 574.7 bits (1480), Expect = 1.8e-160
Identity = 298/555 (53.69%), Postives = 374/555 (67.39%), Query Frame = 1 

Query: 40  NSTKQSDVVLAST--YTPSRAANMFCKNCKLSGHKFSNCPK--------IECRYCHKHGH 99
           + TK  + ++A T  Y P RA+          GH   NCP         + CRYC   GH
Sbjct: 29  DGTKLIEFLMALTDDYEPVRASLK-------KGHIAPNCPTRGPNRSSTLFCRYCKLAGH 88

Query: 100 ILDNCPTRPPRPPGTSTKEKIFTKHGSSSVVAAT-------SDDSSLIQISDLQSLLNQL 159
           I+D+CPTRPPR   T ++ +      S  V+A T       SD  +L+ + DL+S+L Q+
Sbjct: 89  IIDHCPTRPPRSAHTRSQRRSAGSSSSRPVLATTPTNEGQSSDAQALVSVGDLESILKQV 148

Query: 160 ISSSS-----ALAVSSGN-RWLLDSACCNHMTSDVSLMSTSSPTKSLPPIYAADGNCMNI 219
           +S SS     ALA + GN RW  DS CCNHMTS   + S  S    +  I+ ADG+ M +
Sbjct: 149 LSISSSNPPTALATTPGNTRWYFDSTCCNHMTSSSHVFSDLSSRDRISHIHTADGSLMEV 208

Query: 220 SHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDLGLNVSFSPNGCQVQDPQTGQTIGTG 279
           SH G I  PS+ +P  Y +P L FNLVSVGQLCDLG  ++FS  GC VQDP+TG+ IG G
Sbjct: 209 SHKGPISIPSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSSTGCSVQDPRTGKIIGNG 268

Query: 280 RKVGRLFELTSLRVSSPSSISASVTDSDTYQWHLRLGHASSEKLRHLISVNNLTNLTKFV 339
           RK+GR+FELT+L V S +++ A+ T S  + WH  LGH S  KLR LIS+ +L ++ K  
Sbjct: 269 RKIGRMFELTTLHVPSSNNLCATSTPSSIHLWHQGLGHTSLSKLRPLISMGSLGSI-KED 328

Query: 340 PFNCLNCKLAKQPALSFSQSISNCDKPFDLVHSDIWGPAPITTVHGYRYYVLFIDDYSRF 399
             +C  C+  KQ AL F+ SIS+   PFDLVHSD+WG AP  T+ G RY+V+ IDD+SRF
Sbjct: 329 KLDCTACQTTKQAALLFNDSISSSISPFDLVHSDVWGSAPTPTMGGCRYFVILIDDFSRF 388

Query: 400 TWIYFLKHRSELSRTYIEFANMIRTQFSSPIKILRTDNVLEYKDSILLSFLSQQGTIVQR 459
           TWIY +K RSE+ + YI FA MIRTQFS  IK  R DN  EY+DS LL FL++QGT  + 
Sbjct: 389 TWIYLMKSRSEIPQIYINFATMIRTQFSKCIKTFRRDNASEYRDSKLLHFLAEQGTTSEF 448

Query: 460 SCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTS 519
           SCP TSQQNGRAERKHRHILDS+RA+L+S+SCPE+ WGEAALT+VY INRLPSSVL N +
Sbjct: 449 SCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYVINRLPSSVLGNKT 508

Query: 520 PFEKLYGISPDYSKLKVFGSACFVLLHPHEHNKLEPRARLCCFLGYGTEHKGFRCWDPLS 572
           PFE L+G  P Y  L+VFG ACFVLL PHE+ KL+PRARLCCFLGYGTEHKG+R WDP+S
Sbjct: 509 PFECLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPIS 568

[Close]
BLAST of CSPI01G05890 vs. NCBI nr
Match: gi|147817650|emb|CAN62394.1| (hypothetical protein VITISV_021305 [Vitis vinifera])

HSP 1 Score: 469.5 bits (1207), Expect = 8.1e-129
Identity = 253/579 (43.70%), Postives = 362/579 (62.52%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLG-INSTKQSDVVLASTYTPSRAA 60
           M L  ++E +   LL+R+P PSLD A+ E++ EE RL  + + K+ +V+  +  TP    
Sbjct: 149 MSLHKDFEPIHGQLLNRSPAPSLDTAVNELVREEARLATLQAQKKFNVLAITPSTPLIEQ 208

Query: 61  NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSV 120
                +   S ++     K  C YC + GH ++ C  R       +  E       S+SV
Sbjct: 209 PQQSGDSYGSSNRRKQTNKKFCNYCKRPGHTIETCYRRNKSTAAIANIEPT-PPMASTSV 268

Query: 121 VAATSDDSSLIQISDLQSLLNQLI------SSSSALAVSSGNR--WLLDSACCNHMTSDV 180
            + +S  +  +  ++LQ ++ Q I      S S+AL++  G    W  DSACCNHMT   
Sbjct: 269 ESKSSRSTINLSSTELQEIIAQAIRMAGNASLSTALSILPGKSQTWFFDSACCNHMTPHS 328

Query: 181 SLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDL 240
           SL S   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVG L +L
Sbjct: 329 SLFSKLDPAPHPLNIHIADGSTMHGNCLGFVSTSNLSVPGVFHVPDLSYNLFSVGXLAEL 388

Query: 241 GLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVSSPSSIS-----ASVTDSDTY 300
           G ++ F  +GC VQDP+TGQ + TG +VGR+F + +L +   + +S     A+V+   ++
Sbjct: 389 GYHLIFYYSGCIVQDPRTGQELXTGPRVGRMFPVINLHLPPVAPVSIATAAAAVSSLPSF 448

Query: 301 Q-WHLRLGHASSEKLRHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFD 360
             WH RLGHASS +++ L+S   L +++K + F C +C++ KQPAL F+ S S     F+
Sbjct: 449 ALWHSRLGHASSSRVQQLVSRGLLGSVSKDI-FYCTSCQIGKQPALPFNNSESISHSIFE 508

Query: 361 LVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSS 420
           L+HSD+WGP+P+ ++ G RY+V+FIDDYSR++WI+ +K RSE+   Y  FA MI TQFS 
Sbjct: 509 LIHSDVWGPSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFAKMIETQFSK 568

Query: 421 PIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLS 480
            IK  R+DN LEY      + L   GT+   +CP TSQQNGR ERK RHILD+VRALLLS
Sbjct: 569 RIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQNGRVERKLRHILDTVRALLLS 628

Query: 481 ASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPH 540
           A  P  FWGEAAL +V+ INR+PS+V+ N +P+E L+G  P Y  L+ FGSACF LL  H
Sbjct: 629 AKIPAPFWGEAALHAVHAINRIPSAVIHNQTPYEHLFGSPPVYHHLRSFGSACFFLLQSH 688

Query: 541 EHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
           EHNKLEPR+RLCCFLGYG   KG+RC+DP+S+RLR+SR+
Sbjct: 689 EHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRN 725

[Close]
BLAST of CSPI01G05890 vs. NCBI nr
Match: gi|147790768|emb|CAN75041.1| (hypothetical protein VITISV_027174 [Vitis vinifera])

HSP 1 Score: 469.5 bits (1207), Expect = 8.1e-129
Identity = 252/588 (42.86%), Postives = 357/588 (60.71%), Query Frame = 1 

Query: 1   MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLAST-YTPSRAA 60
           M L  ++E +R  LL+R+  PSLD A+ E++ EE RL     +    +LA T  TP    
Sbjct: 177 MSLHKDFEPIRGQLLNRSXAPSLDTAVNELVREEARLATLQAQNKLNILAITPSTPLIEQ 236

Query: 61  NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTR----------PPRPPGTSTKEK 120
                +   S ++     K  C YC + GH ++ C  R           P PP  ST + 
Sbjct: 237 PQQLGDFSGSNNRRKQNNKKFCNYCKRPGHTIETCYRRNKSTATVANTAPTPPTVSTSQS 296

Query: 121 IFTKHGSSSVVAATSDDSSLIQISDLQSLLNQLISSSSALAVSSGNRWLLDSACCNHMTS 180
                 S S +  +S +   I    ++ + N  +S++ ++       WL DSACCNHMT 
Sbjct: 297 ------SGSTINLSSTELQEIIAQAVRMVGNASLSTALSVLPGKSQTWLFDSACCNHMTP 356

Query: 181 DVSLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLC 240
             SL +   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVGQL 
Sbjct: 357 HSSLFTNLDPAPHPLNIHIADGSTMHGNSLGFVSTSTLSVPGVFHVPDLSYNLCSVGQLA 416

Query: 241 DLGLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVS--SPSSISASVTDSDTYQ 300
           +LG  + F  +GC VQD +TGQ +GTG +VGR+F + +L +   +P S++A+     +  
Sbjct: 417 ELGYRLIFXYSGCIVQDXRTGQELGTGPRVGRMFPVNNLHLPPVAPVSVAAATAAVSSLP 476

Query: 301 ----WHLRLGHASSEKLRHLISVNNLTNLTKFV-------PFNCLNCKLAKQPALSFSQS 360
               WH RLGHA S +++ L+S   L ++++ +        F+C +C+L KQPAL F+ S
Sbjct: 477 SLALWHSRLGHAPSSRVQQLVSRGLLGSVSRGLLGSVSKDNFDCTSCQLGKQPALPFNNS 536

Query: 361 ISNCDKPFDLVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFA 420
            S     F+L+HSD+WGP+P+ ++ G RY+V+FIDDYSR++WI+ +K RSE+   Y  FA
Sbjct: 537 DSISKSIFELIHSDVWGPSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFA 596

Query: 421 NMIRTQFSSPIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHIL 480
            M+ TQFS  IK  R+DN LEY        L   GTI   +CP TSQQNGRAERK RHIL
Sbjct: 597 KMVETQFSKRIKTFRSDNALEYTQHAFQXLLHSYGTIHHLTCPGTSQQNGRAERKLRHIL 656

Query: 481 DSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGS 540
           D VRALLLSA  P  FWGEA+L +V+ INR+PS+V+ N +P+E+L+G  P+Y  L+ FGS
Sbjct: 657 DXVRALLLSAKIPAPFWGEASLHAVHAINRIPSTVIHNQTPYERLFGSPPNYHHLRSFGS 716

Query: 541 ACFVLLHPHEHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
            CFVLL PHEHNKLEPR+RLCCFLGYG   KG+RC+DP+S+RLR+SR+
Sbjct: 717 XCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRN 758

[Close]
BLAST of CSPI01G05890 vs. NCBI nr
Match: gi|147802049|emb|CAN74984.1| (hypothetical protein VITISV_035210 [Vitis vinifera])

HSP 1 Score: 458.4 bits (1178), Expect = 1.9e-125
Identity = 253/579 (43.70%), Postives = 354/579 (61.14%), Query Frame = 1 

Query: 1    MGLRPEYESVRAALLHRNPLPSLDAAIQEILFEEKRLGINSTKQSDVVLAST-YTPSRAA 60
            M L  ++E +R  LL+R+P PSLD A+ E++ EE  L     +    VLA T  TP    
Sbjct: 1300 MSLHKDFEPIRGQLLNRSPAPSLDTAVNELVREEAXLATLQAQNKFNVLAITPSTPLIEQ 1359

Query: 61   NMFCKNCKLSGHKFSNCPKIECRYCHKHGHILDNCPTRPPRPPGTSTKEKIFTKHGSSSV 120
                 +   S ++     K  C YC + GH ++ C  R       +  E       S+SV
Sbjct: 1360 PQQSGDSYGSSNRRKQTNKKFCNYCKRPGHTIETCYRRNKSTAAVANIEPT-PPMASTSV 1419

Query: 121  VAATSDDSSLIQISDLQSLLNQLI------SSSSALAVSSGNR--WLLDSACCNHMTSDV 180
             + +S  +  +  ++LQ ++ Q +      S S+AL+V  G    WL DSAC NHMT   
Sbjct: 1420 KSKSSGSTINLSSTELQEIJAQAVRMAGNASLSTALSVLPGKSQTWLFDSACXNHMTPHS 1479

Query: 181  SLMSTSSPTKSLPPIYAADGNCMNISHTGTIDTPSVHLPHTYCVPNLTFNLVSVGQLCDL 240
            SL S   P      I+ ADG+ M+ +  G + T ++ +P  + VP+L++NL SVGQL +L
Sbjct: 1480 SLFSKLDPAPHPLNIHIADGSTMHGNSLGFVSTSNLSVPGVFHVPDLSYNLCSVGQLAEL 1539

Query: 241  GLNVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELTSLRVS--SPSSISASVTDSDTYQ-- 300
            G  + F  +GC VQDP+TG  +GTG +VG +F +++L +   +P SI+ +     +    
Sbjct: 1540 GYRLIFXYSGCIVQDPRTGXELGTGPRVGXMFPVSNLHLPPVAPVSIATAAAAVSSLPSL 1599

Query: 301  --WHLRLGHASSEKLRHLISVNNLTNLTKFVPFNCLNCKLAKQPALSFSQSISNCDKPFD 360
               H RLGH SS +++ L+S   L + +K + F C +C L KQPAL F+   S  +  F+
Sbjct: 1600 ALXHSRLGHXSSSRVQQLVSRGLLGSXSKDI-FXCTSCXLXKQPALPFNNXESISNSIFE 1659

Query: 361  LVHSDIWGPAPITTVHGYRYYVLFIDDYSRFTWIYFLKHRSELSRTYIEFANMIRTQFSS 420
            L+HSD+WGP+P+ ++   RY+V+FIDDYSR++WI+ +K RSE+   Y  FA MI TQFS 
Sbjct: 1660 LIHSDVWGPSPVASIGXSRYFVVFIDDYSRYSWIFPMKSRSEILSIYSNFAKMIETQFSK 1719

Query: 421  PIKILRTDNVLEYKDSILLSFLSQQGTIVQRSCPHTSQQNGRAERKHRHILDSVRALLLS 480
             IK  R+DN LEY      + L   GT+   +CP TSQQNGRAERK RHILD+VRALLLS
Sbjct: 1720 RIKTFRSDNALEYTQHAFQALLHSYGTVHHLTCPGTSQQNGRAERKLRHILDTVRALLLS 1779

Query: 481  ASCPEKFWGEAALTSVYTINRLPSSVLQNTSPFEKLYGISPDYSKLKVFGSACFVLLHPH 540
            A  P  FWGEAAL +V+ INR+PS+V+ N +P+E+L+G  P Y  L+ FGSACFVLL  H
Sbjct: 1780 AKIPAPFWGEAALHAVHAINRIPSAVIHNQTPYERLFGSPPVYHHLRSFGSACFVLLQSH 1839

Query: 541  EHNKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRH 565
            EHNKLEPR+RLCCFLGYG   KG+RC+DP+S+ LR+SR+
Sbjct: 1840 EHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHXLRVSRN 1876

The following BLAST results are available for this feature:
BLAST of CSPI01G05890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC9.5e-4526.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME1.6e-3925.70Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
YN11B_YEAST2.4e-1925.00Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YM13B_YEAST2.4e-1925.00Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YB11B_YEAST2.4e-1925.00Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2... [more]
BLAST of CSPI01G05890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151SM08_CAJCA2.1e-16352.01Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151UDP3_CAJCA1.3e-16053.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5BVC1_VITVI5.7e-12942.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1[more]
A5AF15_VITVI5.7e-12943.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021305 PE=4 SV=1[more]
A5BT22_VITVI1.3e-12543.20Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035210 PE=4 SV=1[more]
BLAST of CSPI01G05890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G05890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012344626|gb|KYP55818.1|3.0e-16352.01Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012366229|gb|KYP77410.1|1.8e-16053.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|147817650|emb|CAN62394.1|8.1e-12943.70hypothetical protein VITISV_021305 [Vitis vinifera][more]
gi|147790768|emb|CAN75041.1|8.1e-12942.86hypothetical protein VITISV_027174 [Vitis vinifera][more]
gi|147802049|emb|CAN74984.1|1.9e-12543.70hypothetical protein VITISV_035210 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR001878Znf_CCHC
IPR012337RNaseH-like_sf
IPR025724GAG-pre-integrase_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G05890.1CSPI01G05890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 342..457
score: 9.9
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 339..505
score: 18
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 58..97
score: 9.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 62..78
score: 0.38coord: 80..96
score: 0
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 56..98
score: 3.5
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 340..497
score: 2.7
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 341..514
score: 7.89
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 267..328
score: 6.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..564
score: 5.9E
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 2..564
score: 5.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G05890Bhi02G000195Wax gourdcpiwgoB116
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G05890Watermelon (97103) v2cpiwmbB055
CSPI01G05890Watermelon (97103) v2cpiwmbB062
CSPI01G05890Watermelon (97103) v2cpiwmbB081
CSPI01G05890Wax gourdcpiwgoB008
CSPI01G05890Wax gourdcpiwgoB050
CSPI01G05890Wax gourdcpiwgoB070
CSPI01G05890Wild cucumber (PI 183967)cpicpiB000
CSPI01G05890Wild cucumber (PI 183967)cpicpiB028
CSPI01G05890Wild cucumber (PI 183967)cpicpiB031
CSPI01G05890Wild cucumber (PI 183967)cpicpiB041
CSPI01G05890Cucumber (Gy14) v1cgycpiB137
CSPI01G05890Cucumber (Gy14) v1cgycpiB233
CSPI01G05890Cucumber (Gy14) v1cgycpiB311
CSPI01G05890Cucumber (Gy14) v1cgycpiB426
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB055
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB104
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB218
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB280
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB407
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB431
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB692
CSPI01G05890Cucurbita maxima (Rimu)cmacpiB694
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB046
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB080
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB204
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB270
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB391
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB421
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB685
CSPI01G05890Cucurbita moschata (Rifu)cmocpiB686
CSPI01G05890Cucumber (Chinese Long) v2cpicuB000
CSPI01G05890Cucumber (Chinese Long) v2cpicuB003
CSPI01G05890Cucumber (Chinese Long) v2cpicuB036
CSPI01G05890Cucumber (Chinese Long) v2cpicuB039
CSPI01G05890Cucumber (Chinese Long) v2cpicuB045
CSPI01G05890Melon (DHL92) v3.5.1cpimeB001
CSPI01G05890Melon (DHL92) v3.5.1cpimeB004
CSPI01G05890Melon (DHL92) v3.5.1cpimeB024
CSPI01G05890Melon (DHL92) v3.5.1cpimeB058
CSPI01G05890Melon (DHL92) v3.5.1cpimeB063
CSPI01G05890Watermelon (Charleston Gray)cpiwcgB059
CSPI01G05890Watermelon (Charleston Gray)cpiwcgB065
CSPI01G05890Watermelon (Charleston Gray)cpiwcgB085
CSPI01G05890Watermelon (Charleston Gray)cpiwcgB092
CSPI01G05890Watermelon (97103) v1cpiwmB009
CSPI01G05890Watermelon (97103) v1cpiwmB038
CSPI01G05890Watermelon (97103) v1cpiwmB066
CSPI01G05890Watermelon (97103) v1cpiwmB101
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB018
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB366
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB379
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB380
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB535
CSPI01G05890Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G05890Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G05890Bottle gourd (USVL1VR-Ls)cpilsiB053
CSPI01G05890Bottle gourd (USVL1VR-Ls)cpilsiB072
CSPI01G05890Melon (DHL92) v3.6.1cpimedB001
CSPI01G05890Melon (DHL92) v3.6.1cpimedB004
CSPI01G05890Melon (DHL92) v3.6.1cpimedB023
CSPI01G05890Melon (DHL92) v3.6.1cpimedB052
CSPI01G05890Cucumber (Gy14) v2cgybcpiB001
CSPI01G05890Cucumber (Gy14) v2cgybcpiB003
CSPI01G05890Cucumber (Gy14) v2cgybcpiB200
CSPI01G05890Cucumber (Gy14) v2cgybcpiB203
CSPI01G05890Silver-seed gourdcarcpiB0056
CSPI01G05890Silver-seed gourdcarcpiB0111
CSPI01G05890Silver-seed gourdcarcpiB0273
CSPI01G05890Silver-seed gourdcarcpiB0289
CSPI01G05890Silver-seed gourdcarcpiB0418
CSPI01G05890Silver-seed gourdcarcpiB0501
CSPI01G05890Cucumber (Chinese Long) v3cpicucB001
CSPI01G05890Cucumber (Chinese Long) v3cpicucB002
CSPI01G05890Cucumber (Chinese Long) v3cpicucB042
CSPI01G05890Cucumber (Chinese Long) v3cpicucB045