CSPI01G04630 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G04630
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Arginine decarboxylase
Location	Chr1 : 2907308 .. 2907520 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGAAGAAGAGAGAACATTAAAGAATGTGTTGGAAAGGTGTGTGGAGAGTTAATATGCCCATACCCTCCAGGAATACCAGTAATGATCCCAGGTGAGATTATATCTGAGGAAGCTGTGGATTATCTGTTGCATTTAAAAGGCAAAGTTGCCTCAATTAGCGGTGCATCTGATCCTAAACTATCTTCACTACTTGTCTGCAATGTGTAA

mRNA sequence

ATGAAAAGAAGAAGAGAGAACATTAAAGAATGTGTTGGAAAGGTGTGTGGAGAGTTAATATGCCCATACCCTCCAGGAATACCAGTAATGATCCCAGGTGAGATTATATCTGAGGAAGCTGTGGATTATCTGTTGCATTTAAAAGGCAAAGTTGCCTCAATTAGCGGTGCATCTGATCCTAAACTATCTTCACTACTTGTCTGCAATGTGTAA

Coding sequence (CDS)

ATGAAAAGAAGAAGAGAGAACATTAAAGAATGTGTTGGAAAGGTGTGTGGAGAGTTAATATGCCCATACCCTCCAGGAATACCAGTAATGATCCCAGGTGAGATTATATCTGAGGAAGCTGTGGATTATCTGTTGCATTTAAAAGGCAAAGTTGCCTCAATTAGCGGTGCATCTGATCCTAAACTATCTTCACTACTTGTCTGCAATGTGTAA

Homology

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BLAST of CSPI01G04630 vs. Swiss-Prot
Match: SPEA_BACSU (Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 1


Query: 8   IKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPKLSSLLV 67
           +KE  G++  E +  YPPGIP+ IPGEII+EE + Y+         + G  D  L  + V
Sbjct: 423 LKEASGRIIAEFVMVYPPGIPIFIPGEIITEENISYIFKNLDAGLPVQGPEDSTLHMIRV 482

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BLAST of CSPI01G04630 vs. TrEMBL
Match: A0A0A0LSC9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025855 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.4e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MKRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60
          MK+RRENIKECVGKVCGELI PYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP
Sbjct: 1  MKKRRENIKECVGKVCGELISPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60

Query: 61 KLSSLLVCNV 71
          KLSSLLVCNV
Sbjct: 61 KLSSLLVCNV 70

[Close]

BLAST of CSPI01G04630 vs. TrEMBL
Match: A0A0A0LR51_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G424710 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1   MKRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60
           +K+RRENIKECVGKVCGELICPYPPGIPVMIPGEIISEE VDYLLHLKGK ASISGASDP
Sbjct: 502 VKKRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEVVDYLLHLKGKGASISGASDP 561

Query: 61  KLSSLLVCNV 71
           KLSSLLVCNV
Sbjct: 562 KLSSLLVCNV 571

[Close]

BLAST of CSPI01G04630 vs. TrEMBL
Match: G7JEX3_MEDTR (Orn/lys/arg decarboxylase OS=Medicago truncatula GN=MTR_4g068230 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.0e-21
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 3   RRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPKL 62
           +R+  IKE +GKV GELICPYPPGIPV+IPGE+I+E AV+YLLH++ K A ISGASDP L
Sbjct: 503 KRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSKGADISGASDPLL 562

Query: 63  SSLLVCNV 71
           SS++VCNV
Sbjct: 563 SSIVVCNV 570

[Close]

BLAST of CSPI01G04630 vs. TrEMBL
Match: B7FJL6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.0e-21
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 3   RRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPKL 62
           +R+  IKE +GKV GELICPYPPGIPV+IPGE+I+E AV+YLLH++ K A ISGASDP L
Sbjct: 183 KRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSKGADISGASDPLL 242

Query: 63  SSLLVCNV 71
           SS++VCNV
Sbjct: 243 SSIVVCNV 250

[Close]

BLAST of CSPI01G04630 vs. TrEMBL
Match: G7JEX4_MEDTR (Orn/lys/arg decarboxylase major region protein OS=Medicago truncatula GN=MTR_4g068240 PE=4 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-21
Identity = 47/68 (69.12%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 3   RRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPKL 62
           +R+  +KE +GKV GELICPYPPGIPV+IPGE+I+E+AVDYLLH++ + A ISGASDP L
Sbjct: 526 KRKVMVKESIGKVSGELICPYPPGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLL 585

Query: 63  SSLLVCNV 71
           SS++VCNV
Sbjct: 586 SSIVVCNV 593

[Close]

BLAST of CSPI01G04630 vs. NCBI nr
Match: gi|700208808|gb|KGN63904.1| (hypothetical protein Csa_1G025855 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.3e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MKRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60
          MK+RRENIKECVGKVCGELI PYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP
Sbjct: 1  MKKRRENIKECVGKVCGELISPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60

Query: 61 KLSSLLVCNV 71
          KLSSLLVCNV
Sbjct: 61 KLSSLLVCNV 70

[Close]

BLAST of CSPI01G04630 vs. NCBI nr
Match: gi|778673595|ref|XP_011650023.1| (PREDICTED: uncharacterized protein LOC101211215 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1   MKRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60
           +K+RRENIKECVGKVCGELICPYPPGIPVMIPGEIISEE VDYLLHLKGK ASISGASDP
Sbjct: 502 VKKRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEVVDYLLHLKGKGASISGASDP 561

Query: 61  KLSSLLVCNV 71
           KLSSLLVCNV
Sbjct: 562 KLSSLLVCNV 571

[Close]

BLAST of CSPI01G04630 vs. NCBI nr
Match: gi|659111914|ref|XP_008455970.1| (PREDICTED: uncharacterized protein LOC103496033 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-30
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1   MKRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDP 60
           +K+RRENIKECVGKVCGELICPYPPGIPVMIPGEIISEE VDYLLHLKGK ASISGASDP
Sbjct: 459 VKKRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEVVDYLLHLKGKGASISGASDP 518

Query: 61  KLSSLLVCN 70
           KLSSLLVCN
Sbjct: 519 KLSSLLVCN 527

[Close]

BLAST of CSPI01G04630 vs. NCBI nr
Match: gi|659107476|ref|XP_008453693.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494341 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 2   KRRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPK 61
           K+RRENIKECVGKVCGELIC YPPGIPVMIPGEIISEEA+DYLLHLK K ASI  ASDPK
Sbjct: 487 KKRRENIKECVGKVCGELICTYPPGIPVMIPGEIISEEALDYLLHLKDKGASIVSASDPK 546

Query: 62  LSSLLVCNV 71
           LSSLLVCNV
Sbjct: 547 LSSLLVCNV 555

[Close]

BLAST of CSPI01G04630 vs. NCBI nr
Match: gi|217073172|gb|ACJ84945.1| (unknown [Medicago truncatula])

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-20
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 3   RRRENIKECVGKVCGELICPYPPGIPVMIPGEIISEEAVDYLLHLKGKVASISGASDPKL 62
           +R+  IKE +GKV GELICPYPPGIPV+IPGE+I+E AV+YLLH++ K A ISGASDP L
Sbjct: 183 KRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSKGADISGASDPLL 242

Query: 63  SSLLVCNV 71
           SS++VCNV
Sbjct: 243 SSIVVCNV 250

The following BLAST results are available for this feature:

BLAST of CSPI01G04630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPEA_BACSU	1.8e-06	38.33	Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA PE=1 SV=2	[more]

BLAST of CSPI01G04630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSC9_CUCSA	4.4e-31	97.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025855 PE=4 SV=1	[more]
A0A0A0LR51_CUCSA	1.7e-30	94.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G424710 PE=4 SV=1	[more]
G7JEX3_MEDTR	7.0e-21	70.59	Orn/lys/arg decarboxylase OS=Medicago truncatula GN=MTR_4g068230 PE=4 SV=1	[more]
B7FJL6_MEDTR	7.0e-21	70.59	Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
G7JEX4_MEDTR	9.1e-21	69.12	Orn/lys/arg decarboxylase major region protein OS=Medicago truncatula GN=MTR_4g0...	[more]

BLAST of CSPI01G04630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G04630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208808\|gb\|KGN63904.1\|	6.3e-31	97.14	hypothetical protein Csa_1G025855 [Cucumis sativus]	[more]
gi\|778673595\|ref\|XP_011650023.1\|	2.4e-30	94.29	PREDICTED: uncharacterized protein LOC101211215 [Cucumis sativus]	[more]
gi\|659111914\|ref\|XP_008455970.1\|	5.3e-30	94.20	PREDICTED: uncharacterized protein LOC103496033 [Cucumis melo]	[more]
gi\|659107476\|ref\|XP_008453693.1\|	3.2e-27	89.86	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494341 [Cucumis me...	[more]
gi\|217073172\|gb\|ACJ84945.1\|	1.0e-20	70.59	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008286	Prn/Lys/Arg_de-COase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04630.1	CSPI01G04630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008286	Orn/Lys/Arg decarboxylase, C-terminal	GENE3D	G3DSA:3.90.100.10		coord: 7..67 score: 8.9
IPR008286	Orn/Lys/Arg decarboxylase, C-terminal	PFAM	PF03711	OKR_DC_1_C	coord: 7..55 score: 1.3
IPR008286	Orn/Lys/Arg decarboxylase, C-terminal	unknown	SSF55904	Ornithine decarboxylase C-terminal domain	coord: 7..68 score: 6.93

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G04630	Cucumber (Gy14) v1	cgycpiB137
CSPI01G04630	Cucurbita maxima (Rimu)	cmacpiB086
CSPI01G04630	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G04630	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G04630	Melon (DHL92) v3.5.1	cpimeB056
CSPI01G04630	Watermelon (Charleston Gray)	cpiwcgB084
CSPI01G04630	Watermelon (97103) v1	cpiwmB100
CSPI01G04630	Cucurbita pepo (Zucchini)	cpecpiB363
CSPI01G04630	Cucurbita pepo (Zucchini)	cpecpiB657
CSPI01G04630	Bottle gourd (USVL1VR-Ls)	cpilsiB071
CSPI01G04630	Melon (DHL92) v3.6.1	cpimedB050
CSPI01G04630	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G04630	Silver-seed gourd	carcpiB0628
CSPI01G04630	Silver-seed gourd	carcpiB0821
CSPI01G04630	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G04630	Watermelon (97103) v2	cpiwmbB080