CSPI01G04080 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G04080
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2537914 .. 2538174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATGCAGCCATCCAGGTTTTGTGGTTGACAACAGTGTGCCACAGTGCACTGCAGCCAGCTTTGGCAGGGCCAATAAGATGGCGTTGACAAACCCCTGTGGAGGGAGCCAAATTGTCAAGCTTTTTTATTCATCTTTTTCTCCTGAATCAAACACATTCTCTGTGATTCTGACTCGACAAAGTCCATTTAGAGCTGTCGCTCTTATCATCATCATCATCATCTTCAAGGTATTTTCATGGAGTGGCCCAAGTTCT

mRNA sequence

ATGGCCAAATGCAGCCATCCAGGTTTTGTGGTTGACAACAGTGTGCCACAGTGCACTGCAGCCAGCTTTGGCAGGGCCAATAAGATGGCGTTGACAAACCCCTGTGGAGGGAGCCAAATTGTCAAGCTTTTTTATTCATCTTTTTCTCCTGAATCAAACACATTCTCTGTGATTCTGACTCGACAAAGTCCATTTAGAGCTGTCGCTCTTATCATCATCATCATCATCTTCAAGGTATTTTCATGGAGTGGCCCAAGTTCT

Coding sequence (CDS)

ATGGCCAAATGCAGCCATCCAGGTTTTGTGGTTGACAACAGTGTGCCACAGTGCACTGCAGCCAGCTTTGGCAGGGCCAATAAGATGGCGTTGACAAACCCCTGTGGAGGGAGCCAAATTGTCAAGCTTTTTTATTCATCTTTTTCTCCTGAATCAAACACATTCTCTGTGATTCTGACTCGACAAAGTCCATTTAGAGCTGTCGCTCTTATCATCATCATCATCATCTTCAAGGTATTTTCATGGAGTGGCCCAAGTTCT
Homology
[Close]
BLAST of CSPI01G04080 vs. TrEMBL
Match: A0A0A0LPM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024280 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.7e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MAKCSHPGFVVDNSVPQCTAASFGRANKMALTNPCGGSQIVKLFYSSFSPESNTFSVILT 60
          MAKCSHPGFVVDNSVPQCTAASFGRANKMALT+PCGGSQIVKLFYSSFSPESNTFSVILT
Sbjct: 1  MAKCSHPGFVVDNSVPQCTAASFGRANKMALTHPCGGSQIVKLFYSSFSPESNTFSVILT 60

Query: 61 RQSPFRAVALIIIIIIFKVFSWSGPSS 88
          RQSPFRAVALIIIIIIFKVFSWSGPSS
Sbjct: 61 RQSPFRAVALIIIIIIFKVFSWSGPSS 87

[Close]
BLAST of CSPI01G04080 vs. NCBI nr
Match: gi|700208749|gb|KGN63845.1| (hypothetical protein Csa_1G024280 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MAKCSHPGFVVDNSVPQCTAASFGRANKMALTNPCGGSQIVKLFYSSFSPESNTFSVILT 60
          MAKCSHPGFVVDNSVPQCTAASFGRANKMALT+PCGGSQIVKLFYSSFSPESNTFSVILT
Sbjct: 1  MAKCSHPGFVVDNSVPQCTAASFGRANKMALTHPCGGSQIVKLFYSSFSPESNTFSVILT 60

Query: 61 RQSPFRAVALIIIIIIFKVFSWSGPSS 88
          RQSPFRAVALIIIIIIFKVFSWSGPSS
Sbjct: 61 RQSPFRAVALIIIIIIFKVFSWSGPSS 87

The following BLAST results are available for this feature:
BLAST of CSPI01G04080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G04080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPM4_CUCSA9.7e-4198.85Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024280 PE=4 SV=1[more]
BLAST of CSPI01G04080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G04080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208749|gb|KGN63845.1|1.4e-4098.85hypothetical protein Csa_1G024280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G04080.1CSPI01G04080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G04080Csa1G024280Cucumber (Chinese Long) v2cpicuB000
CSPI01G04080CsaV3_1G004070Cucumber (Chinese Long) v3cpicucB001
CSPI01G04080CsGy1G003980Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G04080Cucumber (Chinese Long) v3cpicucB004
CSPI01G04080Cucumber (Chinese Long) v3cpicucB043
CSPI01G04080Watermelon (97103) v2cpiwmbB057
CSPI01G04080Watermelon (97103) v2cpiwmbB064
CSPI01G04080Watermelon (97103) v2cpiwmbB078
CSPI01G04080Watermelon (97103) v2cpiwmbB080
CSPI01G04080Wax gourdcpiwgoB039
CSPI01G04080Wax gourdcpiwgoB072
CSPI01G04080Wild cucumber (PI 183967)cpicpiB001
CSPI01G04080Wild cucumber (PI 183967)cpicpiB030
CSPI01G04080Cucumber (Gy14) v1cgycpiB137
CSPI01G04080Cucumber (Gy14) v1cgycpiB161
CSPI01G04080Cucumber (Gy14) v1cgycpiB428
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB051
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB086
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB223
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB397
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB408
CSPI01G04080Cucurbita maxima (Rimu)cmacpiB695
CSPI01G04080Cucurbita moschata (Rifu)cmocpiB042
CSPI01G04080Cucurbita moschata (Rifu)cmocpiB079
CSPI01G04080Cucurbita moschata (Rifu)cmocpiB209
CSPI01G04080Cucurbita moschata (Rifu)cmocpiB394
CSPI01G04080Cucumber (Chinese Long) v2cpicuB006
CSPI01G04080Cucumber (Chinese Long) v2cpicuB038
CSPI01G04080Melon (DHL92) v3.5.1cpimeB006
CSPI01G04080Melon (DHL92) v3.5.1cpimeB029
CSPI01G04080Melon (DHL92) v3.5.1cpimeB056
CSPI01G04080Watermelon (Charleston Gray)cpiwcgB061
CSPI01G04080Watermelon (Charleston Gray)cpiwcgB067
CSPI01G04080Watermelon (Charleston Gray)cpiwcgB084
CSPI01G04080Watermelon (97103) v1cpiwmB040
CSPI01G04080Watermelon (97103) v1cpiwmB068
CSPI01G04080Watermelon (97103) v1cpiwmB100
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB023
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB027
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB363
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G04080Cucurbita pepo (Zucchini)cpecpiB657
CSPI01G04080Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G04080Bottle gourd (USVL1VR-Ls)cpilsiB054
CSPI01G04080Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G04080Melon (DHL92) v3.6.1cpimedB006
CSPI01G04080Melon (DHL92) v3.6.1cpimedB029
CSPI01G04080Melon (DHL92) v3.6.1cpimedB050
CSPI01G04080Cucumber (Gy14) v2cgybcpiB005
CSPI01G04080Cucumber (Gy14) v2cgybcpiB201
CSPI01G04080Silver-seed gourdcarcpiB0419
CSPI01G04080Silver-seed gourdcarcpiB0550
CSPI01G04080Silver-seed gourdcarcpiB0628
CSPI01G04080Silver-seed gourdcarcpiB0821
CSPI01G04080Silver-seed gourdcarcpiB0876
CSPI01G04080Silver-seed gourdcarcpiB1086