CSPI01G04060 (gene) Wild cucumber (PI 183967)

NameCSPI01G04060
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionStress up-regulated Nod 19 protein
LocationChr1 : 2520720 .. 2521281 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAGTATGATGTAGATGCAGAGTTCTGCTCCCTCACAAAGAAGCTTGATGATGATAAATGTAATGCTGTGAAAAAGTCAAAGGTAATGTTTCCATCAAGTGGGTATCTCATCTATGGAGTGGCTAGCCAACATATTGGTGCAACTGGTGCAGCATTTTATGGACAGGTAATAAACTTAACTATTATGTTTATATATTTGCTCTTGCATTCATTAGCACTTCGTTTCTAGTTTTTTGTTTCTGAAAATGGACAGACCTTAGATAATTAGCCTTGATATAAACGCTATGTTCTTATCAGGATGGAAGAGTTCTGTGCTCTTCATCTCCAATTTATGGCGAAGGAAATGAAGAAGGATATGTGATTGGAATGACAACTTGTTATCCAAAGCCAGGTTCAATCACGATCAACAAAGGAGAAATGGTAACTTTTGTATCCAATTATAGTTCTACATTGACCCACAGAGGAGTTCGGGGTATCTTTCACATTATTGTTGCTGTAAAATAAAATCATCATCAACACTTCCGGAAAAAGCTGGCAATGACAGCACCATCGTCATGTAA

mRNA sequence

ATTGAGTATGATGTAGATGCAGAGTTCTGCTCCCTCACAAAGAAGCTTGATGATGATAAATGTAATGCTGTGAAAAAGTCAAAGGTAATGTTTCCATCAAGTGGGTATCTCATCTATGGAGTGGCTAGCCAACATATTGGTGCAACTGGTGCAGCATTTTATGGACAGGATGGAAGAGTTCTGTGCTCTTCATCTCCAATTTATGGCGAAGGAAATGAAGAAGGATATGTGATTGGAATGACAACTTGTTATCCAAAGCCAGGTTCAATCACGATCAACAAAGGAGAAATGAGGAGTTCGGGGTATCTTTCACATTATTGTTGCTGTAAAATAAAATCATCATCAACACTTCCGGAAAAAGCTGGCAATGACAGCACCATCGTCATGTAA

Coding sequence (CDS)

ATTGAGTATGATGTAGATGCAGAGTTCTGCTCCCTCACAAAGAAGCTTGATGATGATAAATGTAATGCTGTGAAAAAGTCAAAGGTAATGTTTCCATCAAGTGGGTATCTCATCTATGGAGTGGCTAGCCAACATATTGGTGCAACTGGTGCAGCATTTTATGGACAGGATGGAAGAGTTCTGTGCTCTTCATCTCCAATTTATGGCGAAGGAAATGAAGAAGGATATGTGATTGGAATGACAACTTGTTATCCAAAGCCAGGTTCAATCACGATCAACAAAGGAGAAATGAGGAGTTCGGGGTATCTTTCACATTATTGTTGCTGTAAAATAAAATCATCATCAACACTTCCGGAAAAAGCTGGCAATGACAGCACCATCGTCATGTAA
BLAST of CSPI01G04060 vs. TrEMBL
Match: A0A0A0LS56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024275 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48
Identity = 104/144 (72.22%), Postives = 111/144 (77.08%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEYDV+AEFCSL  KLDDDKCNAVKKSKVMFPSSGYLIYGVA QHIGATGA FYGQDGRV
Sbjct: 317 IEYDVEAEFCSLKNKLDDDKCNAVKKSKVMFPSSGYLIYGVAHQHIGATGATFYGQDGRV 376

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM-----RSSGYLSHYCCCKI---- 120
           LCSSSPI+G+ NEEGYVIGMTTCYPKPGSI INKGEM       S  L+H     I    
Sbjct: 377 LCSSSPIHGKENEEGYVIGMTTCYPKPGSIKINKGEMVTFVSNYSSTLTHRGVMGIFHII 436

Query: 121 ------KSSSTLPEKAGNDSTIVM 130
                 K SSTL E+ GN++TIVM
Sbjct: 437 VADRIFKPSSTLSEEVGNNNTIVM 460

BLAST of CSPI01G04060 vs. TrEMBL
Match: A0A0A0K2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069440 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-24
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           +EY+V    CS  K    D+CNA K  +++ PSSGY+IYG+A  H+G  G+  YGQDGR 
Sbjct: 297 VEYNVGGT-CSTNKV--GDECNATKMVRLLSPSSGYIIYGMAHLHVGGLGSVLYGQDGRE 356

Query: 61  LCSSSPIYGE----GNEEGYVIGMTTCYPKPGSITINKGEM 98
           LCSSSPIYG     GNE+GYV+GM+TCYPKPGS+ +N  EM
Sbjct: 357 LCSSSPIYGNGSEIGNEKGYVVGMSTCYPKPGSVKLNNKEM 394

BLAST of CSPI01G04060 vs. TrEMBL
Match: W9RAG4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011610 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           +EYD+ AE C  T    + +C   K++K   PSSGY++YGVA QH G   +  YG+DGRV
Sbjct: 282 VEYDI-AESCKTTTDGTNHECIDTKRNKARIPSSGYVVYGVAHQHTGGISSTLYGEDGRV 341

Query: 61  LCSSSPIYGE----GNEEGYVIGMTTCYPKPGSITINKGE 97
           LCSS PIYG+    GNE+GY++GMTTCYP+PGS+ I  GE
Sbjct: 342 LCSSIPIYGKGKEAGNEKGYIVGMTTCYPQPGSVKILDGE 380

BLAST of CSPI01G04060 vs. TrEMBL
Match: W9RA86_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011609 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEY+V AE C  T  +  ++C   +++K   P+ GY++YGVA QH G  G+  YG+DGRV
Sbjct: 282 IEYEV-AESCKTTTGVMSNECIDTRRNKARIPAGGYVVYGVAHQHTGGIGSTLYGEDGRV 341

Query: 61  LCSSSPIYGE----GNEEGYVIGMTTCYPKPGSITINKGE 97
           +CSS PIYG+    GNEEGY++GMTTCYP+PGS+ I  GE
Sbjct: 342 ICSSIPIYGKGEEAGNEEGYIVGMTTCYPQPGSVKILDGE 380

BLAST of CSPI01G04060 vs. TrEMBL
Match: W9RZ49_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011611 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-23
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           +EYD+ A+ C  T    + +C   K++K   PSSGY++YGVA QH G   +  YG+DGRV
Sbjct: 282 VEYDI-AKSCKTTTDGTNHECIDTKRNKARIPSSGYIVYGVAHQHTGGLSSTLYGEDGRV 341

Query: 61  LCSSSPIYGE----GNEEGYVIGMTTCYPKPGSITINKGE 97
           LCSS PIYG+    GNE+GY++GMTTCYP+PGS+ I  GE
Sbjct: 342 LCSSIPIYGKGKEAGNEKGYIVGMTTCYPQPGSVKILDGE 380

BLAST of CSPI01G04060 vs. TAIR10
Match: AT5G61820.1 (AT5G61820.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-16
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1

Query: 15  KLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRVLCSSSPIYGE---- 74
           K + D C  VKK  ++ P  GY++YGVA QH G  G A Y ++G  +C+S P YG     
Sbjct: 305 KTNGDGCVDVKKKSLVMPFDGYIVYGVAHQHAGGIGGALYRENGEGICASMPKYGNGDEP 364

Query: 75  GNEEGYVIGMTTCYP 86
           GNE GY++GM++CYP
Sbjct: 365 GNEAGYIVGMSSCYP 379

BLAST of CSPI01G04060 vs. NCBI nr
Match: gi|778664733|ref|XP_011660342.1| (PREDICTED: uncharacterized protein LOC105436375 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-58
Identity = 120/143 (83.92%), Postives = 121/143 (84.62%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV
Sbjct: 259 IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 318

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM-----RSSGYLSH---------Y 120
           LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM       S  L+H          
Sbjct: 319 LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEMVTFVSNYSSTLTHIGVRGIFHII 378

Query: 121 CCCKIKSSSTLPEKAGNDSTIVM 130
              KIKSSSTLPEKAGNDSTIVM
Sbjct: 379 VADKIKSSSTLPEKAGNDSTIVM 401

BLAST of CSPI01G04060 vs. NCBI nr
Match: gi|700208748|gb|KGN63844.1| (hypothetical protein Csa_1G024275 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 104/144 (72.22%), Postives = 111/144 (77.08%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEYDV+AEFCSL  KLDDDKCNAVKKSKVMFPSSGYLIYGVA QHIGATGA FYGQDGRV
Sbjct: 317 IEYDVEAEFCSLKNKLDDDKCNAVKKSKVMFPSSGYLIYGVAHQHIGATGATFYGQDGRV 376

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM-----RSSGYLSHYCCCKI---- 120
           LCSSSPI+G+ NEEGYVIGMTTCYPKPGSI INKGEM       S  L+H     I    
Sbjct: 377 LCSSSPIHGKENEEGYVIGMTTCYPKPGSIKINKGEMVTFVSNYSSTLTHRGVMGIFHII 436

Query: 121 ------KSSSTLPEKAGNDSTIVM 130
                 K SSTL E+ GN++TIVM
Sbjct: 437 VADRIFKPSSTLSEEVGNNNTIVM 460

BLAST of CSPI01G04060 vs. NCBI nr
Match: gi|778656401|ref|XP_011648993.1| (PREDICTED: uncharacterized protein LOC101210584 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 104/144 (72.22%), Postives = 111/144 (77.08%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEYDV+AEFCSL  KLDDDKCNAVKKSKVMFPSSGYLIYGVA QHIGATGA FYGQDGRV
Sbjct: 288 IEYDVEAEFCSLKNKLDDDKCNAVKKSKVMFPSSGYLIYGVAHQHIGATGATFYGQDGRV 347

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM-----RSSGYLSHYCCCKI---- 120
           LCSSSPI+G+ NEEGYVIGMTTCYPKPGSI INKGEM       S  L+H     I    
Sbjct: 348 LCSSSPIHGKENEEGYVIGMTTCYPKPGSIKINKGEMVTFVSNYSSTLTHRGVMGIFHII 407

Query: 121 ------KSSSTLPEKAGNDSTIVM 130
                 K SSTL E+ GN++TIVM
Sbjct: 408 VADRIFKPSSTLSEEVGNNNTIVM 431

BLAST of CSPI01G04060 vs. NCBI nr
Match: gi|659106805|ref|XP_008453443.1| (PREDICTED: uncharacterized protein LOC103494148 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 101/145 (69.66%), Postives = 113/145 (77.93%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           +EYDV+AE CSLTK+LDD KCNAVKKSKVMFP+SGYLIYGVASQHIGATGAAFYG+DGRV
Sbjct: 286 VEYDVEAESCSLTKRLDDSKCNAVKKSKVMFPTSGYLIYGVASQHIGATGAAFYGEDGRV 345

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEM-----RSSGYLSH---------Y 120
           LCSSSPIYGEGNEEGY+IGMT CYPKPGS+ INKGEM       S  L+H         +
Sbjct: 346 LCSSSPIYGEGNEEGYMIGMTACYPKPGSMKINKGEMVTFVSNYSSTLTHRGVLGLFHIF 405

Query: 121 CCCKI--KSSSTLPEKAGNDSTIVM 130
              +I   SSSTL E+  ND+ IVM
Sbjct: 406 VADEIFKSSSSTLSEEVSNDNIIVM 430

BLAST of CSPI01G04060 vs. NCBI nr
Match: gi|659106797|ref|XP_008453441.1| (PREDICTED: uncharacterized protein LOC103494146 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 97/146 (66.44%), Postives = 112/146 (76.71%), Query Frame = 1

Query: 1   IEYDVDAEFCSLTKKLDDDKCNAVKKSKVMFPSSGYLIYGVASQHIGATGAAFYGQDGRV 60
           IEYDV+AE CS T K+DDDKCNAVKKSKVMFPSSGYLIYGVA QHIGATGA FYG+DGRV
Sbjct: 149 IEYDVEAESCSHTNKVDDDKCNAVKKSKVMFPSSGYLIYGVAHQHIGATGATFYGEDGRV 208

Query: 61  LCSSSPIYGEGNEEGYVIGMTTCYPKPGSITINKGEMRSSGYLSHYCCCK---------- 120
           LCSSSPI+G+GNEEGYV+GMTTCYP+PGS+ INKGEM +  ++S+Y              
Sbjct: 209 LCSSSPIHGKGNEEGYVVGMTTCYPQPGSMKINKGEMVT--FVSNYSSTPTHRGVMGIFH 268

Query: 121 -------IKSSSTLPEKAGNDSTIVM 130
                   KSSS L E+ GN++TIVM
Sbjct: 269 IFVADKIFKSSSALSEEVGNNNTIVM 292

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS56_CUCSA3.2e-4872.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024275 PE=4 SV=1[more]
A0A0A0K2U1_CUCSA5.6e-2456.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G069440 PE=4 SV=1[more]
W9RAG4_9ROSA1.6e-2354.00Uncharacterized protein OS=Morus notabilis GN=L484_011610 PE=4 SV=1[more]
W9RA86_9ROSA2.1e-2353.00Uncharacterized protein OS=Morus notabilis GN=L484_011609 PE=4 SV=1[more]
W9RZ49_9ROSA3.6e-2353.00Uncharacterized protein OS=Morus notabilis GN=L484_011611 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61820.18.5e-1646.67 FUNCTIONS IN: molecular_function unknown[more]
Match NameE-valueIdentityDescription
gi|778664733|ref|XP_011660342.1|4.9e-5883.92PREDICTED: uncharacterized protein LOC105436375 [Cucumis sativus][more]
gi|700208748|gb|KGN63844.1|4.6e-4872.22hypothetical protein Csa_1G024275 [Cucumis sativus][more]
gi|778656401|ref|XP_011648993.1|4.6e-4872.22PREDICTED: uncharacterized protein LOC101210584 [Cucumis sativus][more]
gi|659106805|ref|XP_008453443.1|3.9e-4769.66PREDICTED: uncharacterized protein LOC103494148 [Cucumis melo][more]
gi|659106797|ref|XP_008453441.1|4.3e-4666.44PREDICTED: uncharacterized protein LOC103494146 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011692Stress_up-reg_Nod19
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G04060.1CSPI01G04060.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011692Stress up-regulated Nod 19PFAMPF07712SURNod19coord: 1..97
score: 1.1
NoneNo IPR availablePANTHERPTHR33390FAMILY NOT NAMEDcoord: 1..97
score: 9.7
NoneNo IPR availablePANTHERPTHR33390:SF1SUBFAMILY NOT NAMEDcoord: 1..97
score: 9.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G04060Wax gourdcpiwgoB039
CSPI01G04060Wax gourdcpiwgoB072
CSPI01G04060Wild cucumber (PI 183967)cpicpiB001
CSPI01G04060Wild cucumber (PI 183967)cpicpiB030
CSPI01G04060Cucumber (Gy14) v1cgycpiB137
CSPI01G04060Cucumber (Gy14) v1cgycpiB161
CSPI01G04060Cucumber (Gy14) v1cgycpiB428
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB051
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB086
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB223
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB397
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB408
CSPI01G04060Cucurbita maxima (Rimu)cmacpiB695
CSPI01G04060Cucurbita moschata (Rifu)cmocpiB042
CSPI01G04060Cucurbita moschata (Rifu)cmocpiB079
CSPI01G04060Cucurbita moschata (Rifu)cmocpiB209
CSPI01G04060Cucurbita moschata (Rifu)cmocpiB394
CSPI01G04060Cucumber (Chinese Long) v2cpicuB000
CSPI01G04060Cucumber (Chinese Long) v2cpicuB006
CSPI01G04060Cucumber (Chinese Long) v2cpicuB038
CSPI01G04060Melon (DHL92) v3.5.1cpimeB006
CSPI01G04060Melon (DHL92) v3.5.1cpimeB029
CSPI01G04060Melon (DHL92) v3.5.1cpimeB056
CSPI01G04060Watermelon (Charleston Gray)cpiwcgB061
CSPI01G04060Watermelon (Charleston Gray)cpiwcgB067
CSPI01G04060Watermelon (Charleston Gray)cpiwcgB084
CSPI01G04060Watermelon (97103) v1cpiwmB040
CSPI01G04060Watermelon (97103) v1cpiwmB068
CSPI01G04060Watermelon (97103) v1cpiwmB100
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB023
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB027
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB363
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G04060Cucurbita pepo (Zucchini)cpecpiB657
CSPI01G04060Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G04060Bottle gourd (USVL1VR-Ls)cpilsiB054
CSPI01G04060Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G04060Melon (DHL92) v3.6.1cpimedB006
CSPI01G04060Melon (DHL92) v3.6.1cpimedB029
CSPI01G04060Melon (DHL92) v3.6.1cpimedB050
CSPI01G04060Cucumber (Gy14) v2cgybcpiB001
CSPI01G04060Cucumber (Gy14) v2cgybcpiB005
CSPI01G04060Cucumber (Gy14) v2cgybcpiB201
CSPI01G04060Silver-seed gourdcarcpiB0419
CSPI01G04060Silver-seed gourdcarcpiB0550
CSPI01G04060Silver-seed gourdcarcpiB0628
CSPI01G04060Silver-seed gourdcarcpiB0821
CSPI01G04060Silver-seed gourdcarcpiB0876
CSPI01G04060Silver-seed gourdcarcpiB1086
CSPI01G04060Cucumber (Chinese Long) v3cpicucB001
CSPI01G04060Cucumber (Chinese Long) v3cpicucB004
CSPI01G04060Cucumber (Chinese Long) v3cpicucB043
CSPI01G04060Watermelon (97103) v2cpiwmbB057
CSPI01G04060Watermelon (97103) v2cpiwmbB064
CSPI01G04060Watermelon (97103) v2cpiwmbB078
CSPI01G04060Watermelon (97103) v2cpiwmbB080