CSPI01G03860 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGCATTTATGTTTCTCTTTTGAAACAAATGGCTCCCGAGCATCTTCTGGCCCCCTTTGCAAAGTTATGTGCAGAAGTTCTTGTTGCAGCATCCGATGGTATGCTCAATATAGATGATACTACTGCACGTTCTGTTTTACAGGTCCATATTCAAAAGCATTCAATCATCTTTAGTCAATAATTTTGCTGCTATTCTAATTTTCTTTTGTCAGTATTTGCGACCTGGAATCTCATTAGTTCCCCATGGCTGAAAGCGCAGGATACCTTTGAGATTCTTGCTTGTAAAGAGATTCGACTATCAATAAATCGAGTATCATCATCAGAATCTGGTGATGTAGGTGAGGAAGGGGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCACGCAGTGAGAAAGAGTCTCATACAAAACACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGGTATGGTGTTTTAACTCAATGA ATGCGCATTTATGTTTCTCTTTTGAAACAAATGGCTCCCGAGCATCTTCTGGCCCCCTTTGCAAAGTTATGTGCAGAAGTTCTTGTTGCAGCATCCGATGGTATGCTCAATATAGATGATACTACTGCACGTTCTGTTTTACAGGATACCTTTGAGATTCTTGCTTGTAAAGAGATTCGACTATCAATAAATCGAGTATCATCATCAGAATCTGGTGATGTAGGTGAGGAAGGGGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCACGCAGTGAGAAAGAGTCTCATACAAAACACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGGTATGGTGTTTTAACTCAATGA ATGCGCATTTATGTTTCTCTTTTGAAACAAATGGCTCCCGAGCATCTTCTGGCCCCCTTTGCAAAGTTATGTGCAGAAGTTCTTGTTGCAGCATCCGATGGTATGCTCAATATAGATGATACTACTGCACGTTCTGTTTTACAGGATACCTTTGAGATTCTTGCTTGTAAAGAGATTCGACTATCAATAAATCGAGTATCATCATCAGAATCTGGTGATGTAGGTGAGGAAGGGGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCACGCAGTGAGAAAGAGTCTCATACAAAACACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGGTATGGTGTTTTAACTCAATGA
BLAST of CSPI01G03860 vs. Swiss-Prot
Match: CNDD3_MOUSE (Condensin-2 complex subunit D3 OS=Mus musculus GN=Ncapd3 PE=1 SV=3) HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08 Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 1
BLAST of CSPI01G03860 vs. Swiss-Prot
Match: CNDD3_HUMAN (Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07 Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 1
BLAST of CSPI01G03860 vs. TrEMBL
Match: O24610_ARATH (Condensation complex subunit 1 domain-containing protein OS=Arabidopsis thaliana GN=dl3985w PE=4 SV=2) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1
BLAST of CSPI01G03860 vs. TrEMBL
Match: Q7DLS9_ARATH (G14587-6 protein (Fragment) OS=Arabidopsis thaliana GN=G14587-6 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1
BLAST of CSPI01G03860 vs. TrEMBL
Match: A0A078DNK8_BRANA (BnaA03g42240D protein OS=Brassica napus GN=BnaA03g42240D PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 1
BLAST of CSPI01G03860 vs. TrEMBL
Match: A0A078JSN3_BRANA (BnaCnng65470D protein OS=Brassica napus GN=BnaCnng65470D PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 1
BLAST of CSPI01G03860 vs. TrEMBL
Match: M4D8E4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.4e-40 Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 1
BLAST of CSPI01G03860 vs. TAIR10
Match: AT4G15890.1 (AT4G15890.1 binding) HSP 1 Score: 171.8 bits (434), Expect = 2.7e-43 Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1
BLAST of CSPI01G03860 vs. NCBI nr
Match: gi|659117118|ref|XP_008458433.1| (PREDICTED: condensin-2 complex subunit D3 isoform X2 [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
BLAST of CSPI01G03860 vs. NCBI nr
Match: gi|659117120|ref|XP_008458434.1| (PREDICTED: condensin-2 complex subunit D3 isoform X3 [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
BLAST of CSPI01G03860 vs. NCBI nr
Match: gi|659117122|ref|XP_008458435.1| (PREDICTED: condensin-2 complex subunit D3 isoform X4 [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
BLAST of CSPI01G03860 vs. NCBI nr
Match: gi|659117124|ref|XP_008458436.1| (PREDICTED: condensin-2 complex subunit D3 isoform X5 [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
BLAST of CSPI01G03860 vs. NCBI nr
Match: gi|659117104|ref|XP_008458425.1| (PREDICTED: condensin-2 complex subunit D3 isoform X1 [Cucumis melo]) HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52 Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |