CSPI01G03420 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEthylene-responsive transcription factor
LocationChr1 : 2144806 .. 2145405 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCAATTCTTCATCTCTACCTCCAAATCAAGAGATCAACCATGGAAGAAGAAGGTTTCTTGGAGTAAGACAACGCCCTTCAGGAAGATGGGTTGCTGAAATCAAAGTCTCCTCACAGAAACTTAGGCTGTGGCTTGGAACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCTGCAAAGACAAATTTCTCATATGATTATCATCATGGCTTCTTCAATTCCACCATTAATCAAGAACAAACTCCTTCATTGTTTGAACATAGTCCTAAACTCTGTCGTTTGCTTCAACATGCTCTTATGAAAAACAGAAGCCGTTTGATATCAACAACTGATCATCAGTATCATCATCGTCGTCGTCATCAACAACAACAGATATCGAGAAATAATGGGGGTATTGATTCGGTTGTTGAAGATACCATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATAATAGTAGTAATAAAGGGTGTGGATGTGGATTTTCTTTTGGAGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTCAGAAGTGA

mRNA sequence

ATGGCTACCAATTCTTCATCTCTACCTCCAAATCAAGAGATCAACCATGGAAGAAGAAGGTTTCTTGGAGTAAGACAACGCCCTTCAGGAAGATGGGTTGCTGAAATCAAAGTCTCCTCACAGAAACTTAGGCTGTGGCTTGGAACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCTGCAAAGACAAATTTCTCATATGATTATCATCATGGCTTCTTCAATTCCACCATTAATCAAGAACAAACTCCTTCATTGTTTGAACATAGTCCTAAACTCTGTCGTTTGCTTCAACATGCTCTTATGAAAAACAGAAGCCGTTTGATATCAACAACTGATCATCAGTATCATCATCGTCGTCGTCATCAACAACAACAGATATCGAGAAATAATGGGGGTATTGATTCGGTTGTTGAAGATACCATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATAATAGTAGTAATAAAGGGTGTGGATGTGGATTTTCTTTTGGAGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTCAGAAGTGA

Coding sequence (CDS)

ATGGCTACCAATTCTTCATCTCTACCTCCAAATCAAGAGATCAACCATGGAAGAAGAAGGTTTCTTGGAGTAAGACAACGCCCTTCAGGAAGATGGGTTGCTGAAATCAAAGTCTCCTCACAGAAACTTAGGCTGTGGCTTGGAACTTTCAACAGAGCTGAAGATGCTGCCATGGCTTATGACAGAGCTGCAAGGCTTCTCAGAGGAAGATCTGCAAAGACAAATTTCTCATATGATTATCATCATGGCTTCTTCAATTCCACCATTAATCAAGAACAAACTCCTTCATTGTTTGAACATAGTCCTAAACTCTGTCGTTTGCTTCAACATGCTCTTATGAAAAACAGAAGCCGTTTGATATCAACAACTGATCATCAGTATCATCATCGTCGTCGTCATCAACAACAACAGATATCGAGAAATAATGGGGGTATTGATTCGGTTGTTGAAGATACCATTTTCTGTTCTTCAACGAATTTGGTTGAAAATAATAATAATAGTAGTAATAAAGGGTGTGGATGTGGATTTTCTTTTGGAGGTTCTAAAGTTTATACTTCTGTGTTTGTAGCTCCTTCTTTTAGCTCTGATGTTCAGAAGTGA
Homology
[Close]
BLAST of CSPI01G03420 vs. Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 18 RRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFS 77
          + +F+GVRQRPSG+WVAEIK ++QK+R+WLGTF  AE+AA AYD AA LLRG + +TNF+
Sbjct: 19 KTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFA 78

[Close]
BLAST of CSPI01G03420 vs. Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-15
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 10  PNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRG 69
           PN        RF GVR+RP GR+ AEI+   +K R+WLGTF+ AEDAA AYD AAR LRG
Sbjct: 17  PNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRG 76

Query: 70  RSAKTNFSYDY-HHGFFNSTINQEQTP 96
             AKTNF   Y HH  FN   N    P
Sbjct: 77  PKAKTNFPLPYAHHHQFNQGHNPNNDP 103

[Close]
BLAST of CSPI01G03420 vs. Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-14
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 1  MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
          M T SS     Q+   G R FLGVR+RP GR+ AEI+  + K R WLGTF+ AE+AA+AY
Sbjct: 1  MNTTSSKSKKKQDDQVGTR-FLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAY 60

Query: 61 DRAARLLRGRSAKTNFSY 79
          DRAAR +RG  A+TNF Y
Sbjct: 61 DRAARSMRGTRARTNFVY 77

[Close]
BLAST of CSPI01G03420 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-14
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 17  GRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNF 76
           G ++F GVRQRP G+W AEI+   +++RLWLGT+N AE+AAM YD AA  LRG  A TNF
Sbjct: 118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Query: 77  S 78
           S
Sbjct: 178 S 178

[Close]
BLAST of CSPI01G03420 vs. Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.7e-14
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 5   SSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAA 64
           SSSL   ++ N  +R + GVRQRP G+W AEI+  ++  R+WLGTF+ AE+AA+AYD+AA
Sbjct: 54  SSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAA 113

Query: 65  RLLRGRSAKTNF 77
              RG  AK NF
Sbjct: 114 FEFRGHKAKLNF 125

[Close]
BLAST of CSPI01G03420 vs. TrEMBL
Match: A0A0A0LPP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015755 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 3.9e-109
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY
Sbjct: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI
Sbjct: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG 180
           STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG
Sbjct: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG 180

Query: 181 SKVYTSVFVAPSFSSDVQK 200
           SKVYTSVFVAPSFSSDVQK
Sbjct: 181 SKVYTSVFVAPSFSSDVQK 199

[Close]
BLAST of CSPI01G03420 vs. TrEMBL
Match: B9RE64_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618730 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 91/184 (49.46%), Postives = 125/184 (67.93%), Query Frame = 1 

Query: 14  INHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAK 73
           +N+  R++LGVRQRPSGRWVAEIK +SQKLRLWLGTF+ AE+AA++YD AARLLRGR+AK
Sbjct: 48  VNNKGRKYLGVRQRPSGRWVAEIKDASQKLRLWLGTFDTAEEAALSYDSAARLLRGRNAK 107

Query: 74  TNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLISTTDHQYHHRRRH 133
           TNF  D+H    N+    ++   L   +P+L +LLQHA++KN  + + +      ++   
Sbjct: 108 TNFPNDHHGNMVNT---HQEICRLLGKNPRLHQLLQHAVLKNHGKSLLSRRIPLVNQNER 167

Query: 134 QQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGGSKVYTSVFVAPSF 193
            Q   S N    DS+VEDTI CSS++  ++++N       CG SFG  KVY+SV VAPSF
Sbjct: 168 NQVDSSFN---FDSLVEDTIICSSSSADDHDHNQDGSDKFCGLSFGSCKVYSSVIVAPSF 225

Query: 194 SSDV 198
           S+ +
Sbjct: 228 SASL 225

[Close]
BLAST of CSPI01G03420 vs. TrEMBL
Match: A0A067FHF2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042608mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 2   LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 61

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +     + 
Sbjct: 62  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 121

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNL----VENNNNSSNKGCGCGF 180
           S++    ++      + I+      D++VE+TIFCSST+     V+++ N  N     G 
Sbjct: 122 SSSKFLNNNMANRDDESIN-----FDTLVEETIFCSSTSTADCSVKSHGNFDN-----GL 181

Query: 181 SFGGSKVYTSVFVAPSFSSDV 198
           SFG SKVY+SV VAPSFS+ +
Sbjct: 182 SFGSSKVYSSVVVAPSFSASL 185

[Close]
BLAST of CSPI01G03420 vs. TrEMBL
Match: V4TW16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022187mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-36
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 26  LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 85

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +     + 
Sbjct: 86  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 145

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNL----VENNNNSSNKGCGCGF 180
           S++    ++      + I+      D++VE+TIFCSST+     V+++ N  N     G 
Sbjct: 146 SSSKFLNNNMANRDDESIN-----FDTLVEETIFCSSTSTADCSVKSHGNFDN-----GL 205

Query: 181 SFGGSKVYTSVFVAPSFSSDV 198
           SFG SKVY+SV VAPSFS+ +
Sbjct: 206 SFGSSKVYSSVVVAPSFSASL 209

[Close]
BLAST of CSPI01G03420 vs. TrEMBL
Match: W9SE25_9ROSA (Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_022246 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-36
Identity = 100/191 (52.36%), Postives = 129/191 (67.54%), Query Frame = 1 

Query: 13  EINHGR-RRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRS 72
           +IN G  RRFLGVRQRPSGRWVAEIK SSQKLRLWLGTF+  EDAA+AYD+AARLLRGR+
Sbjct: 45  KINKGNIRRFLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDTPEDAALAYDKAARLLRGRN 104

Query: 73  AKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSR-------LISTTD 132
           AKTNF    + GF NS    E+  S+   +P+LC++L+HALMKN++R       L S  D
Sbjct: 105 AKTNFP---NQGFLNS---HEENCSILGKNPRLCQVLKHALMKNKARSNLSSSSLGSAID 164

Query: 133 HQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGGSKVY 192
               +R R +      ++   D++VE+TI CSS+N  +  ++   +   C  S G SKVY
Sbjct: 165 ---INRWRDRNMGEEFDSVSFDAIVEETIVCSSSN-EDGVDDDGQRNKLCTLSLGSSKVY 224

Query: 193 TSVFVAPSFSS 196
           +SV VAPSFS+
Sbjct: 225 SSVVVAPSFSA 225

[Close]
BLAST of CSPI01G03420 vs. TAIR10
Match: AT5G19790.1 (AT5G19790.1 related to AP2 11)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 18 RRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFS 77
          + +F+GVRQRPSG+WVAEIK ++QK+R+WLGTF  AE+AA AYD AA LLRG + +TNF+
Sbjct: 19 KTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFA 78

[Close]
BLAST of CSPI01G03420 vs. TAIR10
Match: AT5G13910.1 (AT5G13910.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 7.7e-16
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 1  MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
          M T SS     Q+   G R FLGVR+RP GR+ AEI+  + K R WLGTF+ AE+AA+AY
Sbjct: 1  MNTTSSKSKKKQDDQVGTR-FLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAY 60

Query: 61 DRAARLLRGRSAKTNFSY 79
          DRAAR +RG  A+TNF Y
Sbjct: 61 DRAARSMRGTRARTNFVY 77

[Close]
BLAST of CSPI01G03420 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 17  GRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNF 76
           G ++F GVRQRP G+W AEI+   +++RLWLGT+N AE+AAM YD AA  LRG  A TNF
Sbjct: 118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Query: 77  S 78
           S
Sbjct: 178 S 178

[Close]
BLAST of CSPI01G03420 vs. TAIR10
Match: AT2G33710.2 (AT2G33710.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-15
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 5   SSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAA 64
           SSSL   ++ N  +R + GVRQRP G+W AEI+  ++  R+WLGTF+ AE+AA+AYD+AA
Sbjct: 54  SSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAA 113

Query: 65  RLLRGRSAKTNF 77
              RG  AK NF
Sbjct: 114 FEFRGHKAKLNF 125

[Close]
BLAST of CSPI01G03420 vs. TAIR10
Match: AT1G28160.1 (AT1G28160.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 20 RFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAKTNFSY 79
          +++GVR+RP GR+ AEI+  + K R WLGTF+ AE+AA+AYDRAAR +RG +A+TNF Y
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVY 96

[Close]
BLAST of CSPI01G03420 vs. NCBI nr
Match: gi|449441127|ref|XP_004138335.1| (PREDICTED: ethylene-responsive transcription factor ERF086-like [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 5.6e-109
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY
Sbjct: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI
Sbjct: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG 180
           STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG
Sbjct: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGG 180

Query: 181 SKVYTSVFVAPSFSSDVQK 200
           SKVYTSVFVAPSFSSDVQK
Sbjct: 181 SKVYTSVFVAPSFSSDVQK 199

[Close]
BLAST of CSPI01G03420 vs. NCBI nr
Match: gi|255541878|ref|XP_002512003.1| (PREDICTED: ethylene-responsive transcription factor RAP2-2 [Ricinus communis])

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-37
Identity = 91/184 (49.46%), Postives = 125/184 (67.93%), Query Frame = 1 

Query: 14  INHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAYDRAARLLRGRSAK 73
           +N+  R++LGVRQRPSGRWVAEIK +SQKLRLWLGTF+ AE+AA++YD AARLLRGR+AK
Sbjct: 48  VNNKGRKYLGVRQRPSGRWVAEIKDASQKLRLWLGTFDTAEEAALSYDSAARLLRGRNAK 107

Query: 74  TNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLISTTDHQYHHRRRH 133
           TNF  D+H    N+    ++   L   +P+L +LLQHA++KN  + + +      ++   
Sbjct: 108 TNFPNDHHGNMVNT---HQEICRLLGKNPRLHQLLQHAVLKNHGKSLLSRRIPLVNQNER 167

Query: 134 QQQQISRNNGGIDSVVEDTIFCSSTNLVENNNNSSNKGCGCGFSFGGSKVYTSVFVAPSF 193
            Q   S N    DS+VEDTI CSS++  ++++N       CG SFG  KVY+SV VAPSF
Sbjct: 168 NQVDSSFN---FDSLVEDTIICSSSSADDHDHNQDGSDKFCGLSFGSCKVYSSVIVAPSF 225

Query: 194 SSDV 198
           S+ +
Sbjct: 228 SASL 225

[Close]
BLAST of CSPI01G03420 vs. NCBI nr
Match: gi|568882952|ref|XP_006494265.1| (PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Citrus sinensis])

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 103/203 (50.74%), Postives = 136/203 (67.00%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 26  LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 85

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +  +S  I
Sbjct: 86  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAV-TKSHAI 145

Query: 121 STTDHQYHHRRRHQQQQISRNNGGI--DSVVEDTIFCSSTNL----VENNNNSSNKGCGC 180
           S++    ++         +R++  I  D++VE+TIFCSST+     V+++ N  N     
Sbjct: 146 SSSSTFLNNNMAINNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDN----- 205

Query: 181 GFSFGGSKVYTSVFVAPSFSSDV 198
           G SFG SKVY+SV VAPSFS+ +
Sbjct: 206 GLSFGSSKVYSSVVVAPSFSASL 215

[Close]
BLAST of CSPI01G03420 vs. NCBI nr
Match: gi|641846693|gb|KDO65575.1| (hypothetical protein CISIN_1g042608mg, partial [Citrus sinensis])

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 2   LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 61

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +     + 
Sbjct: 62  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 121

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNL----VENNNNSSNKGCGCGF 180
           S++    ++      + I+      D++VE+TIFCSST+     V+++ N  N     G 
Sbjct: 122 SSSKFLNNNMANRDDESIN-----FDTLVEETIFCSSTSTADCSVKSHGNFDN-----GL 181

Query: 181 SFGGSKVYTSVFVAPSFSSDV 198
           SFG SKVY+SV VAPSFS+ +
Sbjct: 182 SFGSSKVYSSVVVAPSFSASL 185

[Close]
BLAST of CSPI01G03420 vs. NCBI nr
Match: gi|567896776|ref|XP_006440876.1| (hypothetical protein CICLE_v10022187mg [Citrus clementina])

HSP 1 Score: 159.8 bits (403), Expect = 4.8e-36
Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1 

Query: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 26  LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 85

Query: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +     + 
Sbjct: 86  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 145

Query: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNL----VENNNNSSNKGCGCGF 180
           S++    ++      + I+      D++VE+TIFCSST+     V+++ N  N     G 
Sbjct: 146 SSSKFLNNNMANRDDESIN-----FDTLVEETIFCSSTSTADCSVKSHGNFDN-----GL 205

Query: 181 SFGGSKVYTSVFVAPSFSSDV 198
           SFG SKVY+SV VAPSFS+ +
Sbjct: 206 SFGSSKVYSSVVVAPSFSASL 209

The following BLAST results are available for this feature:
BLAST of CSPI01G03420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RA211_ARATH1.9e-1665.00Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2... [more]
ERF3_TOBAC2.7e-1554.02Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=... [more]
LEP_ARATH1.4e-1456.41Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2... [more]
CRF2_ARATH5.2e-1460.66Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE... [more]
EF112_ARATH6.7e-1452.78Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF11... [more]
BLAST of CSPI01G03420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPP4_CUCSA3.9e-109100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015755 PE=4 SV=1[more]
B9RE64_RICCO1.8e-3749.46Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618730 PE=4 SV=1[more]
A0A067FHF2_CITSI3.3e-3649.75Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042608mg PE=4 S... [more]
V4TW16_9ROSI3.3e-3649.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022187mg PE=4 SV=1[more]
W9SE25_9ROSA5.7e-3652.36Ethylene-responsive transcription factor OS=Morus notabilis GN=L484_022246 PE=4 ... [more]
BLAST of CSPI01G03420 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19790.11.1e-1765.00 related to AP2 11[more]
AT5G13910.17.7e-1656.41 Integrase-type DNA-binding superfamily protein[more]
AT4G23750.12.9e-1560.66 cytokinin response factor 2[more]
AT2G33710.23.8e-1552.78 Integrase-type DNA-binding superfamily protein[more]
AT1G28160.11.9e-1459.32 Integrase-type DNA-binding superfamily protein[more]
BLAST of CSPI01G03420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441127|ref|XP_004138335.1|5.6e-109100.00PREDICTED: ethylene-responsive transcription factor ERF086-like [Cucumis sativus... [more]
gi|255541878|ref|XP_002512003.1|2.5e-3749.46PREDICTED: ethylene-responsive transcription factor RAP2-2 [Ricinus communis][more]
gi|568882952|ref|XP_006494265.1|2.8e-3650.74PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Citrus sinensi... [more]
gi|641846693|gb|KDO65575.1|4.8e-3649.75hypothetical protein CISIN_1g042608mg, partial [Citrus sinensis][more]
gi|567896776|ref|XP_006440876.1|4.8e-3649.75hypothetical protein CICLE_v10022187mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
IPR017392AP2/ERF-transcript_factor
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03420.1CSPI01G03420.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 43..59
score: 1.7E-6coord: 21..32
score: 1.
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 20..77
score: 1.7
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 23..69
score: 9.
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 20..83
score: 1.7
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 20..77
score: 18
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 21..79
score: 1.44
IPR017392AP2/ERF transcription factor ERF/PTI6PANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 10..77
score: 7.1
NoneNo IPR availablePANTHERPTHR31194:SF0ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF3-RELATEDcoord: 10..77
score: 7.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03420Cla019007Watermelon (97103) v1cpiwmB100
CSPI01G03420MELO3C017272Melon (DHL92) v3.5.1cpimeB056
CSPI01G03420ClCG06G015170Watermelon (Charleston Gray)cpiwcgB084
CSPI01G03420Lsi06G013650Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G03420MELO3C017272.2Melon (DHL92) v3.6.1cpimedB050
CSPI01G03420CsaV3_1G003450Cucumber (Chinese Long) v3cpicucB001
CSPI01G03420Cla97C06G124650Watermelon (97103) v2cpiwmbB080
CSPI01G03420Bhi02G000016Wax gourdcpiwgoB115
CSPI01G03420Cucsa.198700Cucumber (Gy14) v1cgycpiB310
CSPI01G03420CmaCh11G002540Cucurbita maxima (Rimu)cmacpiB106
CSPI01G03420CmoCh11G002600Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03420Cp4.1LG04g14190Cucurbita pepo (Zucchini)cpecpiB646
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03420Cucumber (Chinese Long) v3cpicucB004
CSPI01G03420Watermelon (97103) v2cpiwmbB057
CSPI01G03420Wild cucumber (PI 183967)cpicpiB001
CSPI01G03420Cucumber (Gy14) v1cgycpiB428
CSPI01G03420Cucurbita maxima (Rimu)cmacpiB062
CSPI01G03420Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03420Cucurbita maxima (Rimu)cmacpiB223
CSPI01G03420Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03420Cucurbita maxima (Rimu)cmacpiB695
CSPI01G03420Cucurbita moschata (Rifu)cmocpiB053
CSPI01G03420Cucurbita moschata (Rifu)cmocpiB097
CSPI01G03420Cucurbita moschata (Rifu)cmocpiB388
CSPI01G03420Cucumber (Chinese Long) v2cpicuB000
CSPI01G03420Cucumber (Chinese Long) v2cpicuB006
CSPI01G03420Melon (DHL92) v3.5.1cpimeB006
CSPI01G03420Watermelon (Charleston Gray)cpiwcgB061
CSPI01G03420Watermelon (97103) v1cpiwmB068
CSPI01G03420Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G03420Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03420Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G03420Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G03420Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G03420Bottle gourd (USVL1VR-Ls)cpilsiB062
CSPI01G03420Cucumber (Gy14) v2cgybcpiB001
CSPI01G03420Cucumber (Gy14) v2cgybcpiB005
CSPI01G03420Silver-seed gourdcarcpiB0419
CSPI01G03420Silver-seed gourdcarcpiB0497
CSPI01G03420Silver-seed gourdcarcpiB0550
CSPI01G03420Silver-seed gourdcarcpiB0627
CSPI01G03420Silver-seed gourdcarcpiB0628