CSPI01G01350 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGTAAGAGCCATTTTCTTGTATTTCCTATGTACTTTTCATCTGGGTTCAAGACATGCATGATGCAGAAAACTTATTGAGTTCATAATCTGTAGTTTCTGAGCTCCGAGATGTTATATTTTTGTGTTTTTGCTGTATTCAATCAAAAGGGAGTTCGAAATGCCTTTTCAGTATCCAAGTAGTTACCCTGAGGGAATGCTGAAGATTATACTTCTCAATATCCAGTTCTTACAAATTGTATCCTGAAAATTAATCTAGCGTAGTCAGACGATTGCATGGTCCAGTAGATCAATATTCATCTTAGTTCAAGTGATTATCGTGTTAATGTTCTTTTTGGTGCTTACAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCGTACGTTCAACTGTCAATTTGACTTGTGCATGTATTCCTGCTATTCCTTAAATAACGTGTTAAGAAAATAATTAATATTGTTTTCTCTTCAGCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA
BLAST of CSPI01G01350 vs. Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30 Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 1
BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A0A0LNW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004905 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 7.4e-54 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A061FTM5_THECC (Ataxia telangiectasia mutated, putative OS=Theobroma cacao GN=TCM_012074 PE=3 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 1.2e-40 Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1
BLAST of CSPI01G01350 vs. TrEMBL
Match: A5BK76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037238 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 4.0e-39 Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 1
BLAST of CSPI01G01350 vs. TrEMBL
Match: U5FMP3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08800g PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39 Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 1
BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A067K4N0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11473 PE=3 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 8.8e-39 Identity = 81/109 (74.31%), Postives = 94/109 (86.24%), Query Frame = 1
BLAST of CSPI01G01350 vs. TAIR10
Match: AT3G48190.1 (AT3G48190.1 ataxia-telangiectasia mutated) HSP 1 Score: 131.7 bits (330), Expect = 2.7e-31 Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 1
BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|700208479|gb|KGN63575.1| (hypothetical protein Csa_1G004905 [Cucumis sativus]) HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|778655635|ref|XP_011656922.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis sativus]) HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|778655632|ref|XP_011656886.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis sativus]) HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|659105399|ref|XP_008453087.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis melo]) HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52 Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1
BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|659105403|ref|XP_008453088.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Cucumis melo]) HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52 Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |