CSPI01G01350 (gene) Wild cucumber (PI 183967)

NameCSPI01G01350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionSerine/threonine-protein kinase ATM
LocationChr1 : 867990 .. 868754 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGTAAGAGCCATTTTCTTGTATTTCCTATGTACTTTTCATCTGGGTTCAAGACATGCATGATGCAGAAAACTTATTGAGTTCATAATCTGTAGTTTCTGAGCTCCGAGATGTTATATTTTTGTGTTTTTGCTGTATTCAATCAAAAGGGAGTTCGAAATGCCTTTTCAGTATCCAAGTAGTTACCCTGAGGGAATGCTGAAGATTATACTTCTCAATATCCAGTTCTTACAAATTGTATCCTGAAAATTAATCTAGCGTAGTCAGACGATTGCATGGTCCAGTAGATCAATATTCATCTTAGTTCAAGTGATTATCGTGTTAATGTTCTTTTTGGTGCTTACAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCGTACGTTCAACTGTCAATTTGACTTGTGCATGTATTCCTGCTATTCCTTAAATAACGTGTTAAGAAAATAATTAATATTGTTTTCTCTTCAGCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA

mRNA sequence

ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA

Coding sequence (CDS)

ATGATCACCTCCAGAGATGTCCAAGATATCATTTCAAAGCTATCTTCTGATAAAGCTAAAACTCGCGAGGAAGGGATAAAGTTGTTGAATACATGGCTAGAGGGAGAAAAAGCAATAGATTTCTGTAAATTTATTGGACAGAACACTGCTAAGCTCAAGCCAGAAGAAATTCCATCTCCTGAAACGTGGCCTTTCATCACAAAACTGTTGATTCAATGTGTGTCTATGGAGATATCTTCAAGCAAGCGGCGATTACCAAAGTTAATGTTTGCGAAGACACTTAGGGGTGTCGTTCAAAAAGCAGAAGCTAATAAGTTTTCTGGTGAGTAA
BLAST of CSPI01G01350 vs. Swiss-Prot
Match: ATM_ARATH (Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 1

Query: 9   DIISKLSSDKAKTR------EEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSPET 68
           D +S+ +  K K+       ++G+KLLNTWLEGE++I FC+F+ QNTAKLK +EIP+ ET
Sbjct: 816 DSLSRETKAKLKSEITGLLEKDGVKLLNTWLEGERSITFCRFLSQNTAKLKLDEIPNAET 875

Query: 69  WPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           WPF+ KLL+QCVSME+S SKRR+PK  FAKTLR VVQ+ E  KF G
Sbjct: 876 WPFLVKLLLQCVSMEVSGSKRRMPKPTFAKTLRVVVQRTEETKFPG 921

BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A0A0LNW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004905 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.4e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 110
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 109

BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A061FTM5_THECC (Ataxia telangiectasia mutated, putative OS=Theobroma cacao GN=TCM_012074 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-40
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           M+TSRDVQ+I+SKLSSDKAK REEGIKLLN WLEGE++I FCKF GQNTAKLKP EIP  
Sbjct: 1   MVTSRDVQEIVSKLSSDKAKAREEGIKLLNMWLEGERSIGFCKFFGQNTAKLKPNEIPQS 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           ETWPF+ KLL QCVS+EIS+SKRR PKL FAKTLR V+Q+AE  KFSG
Sbjct: 61  ETWPFLIKLLTQCVSLEISTSKRRPPKLTFAKTLRIVIQRAEDTKFSG 108

BLAST of CSPI01G01350 vs. TrEMBL
Match: A5BK76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037238 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-39
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 1

Query: 2   ITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSPE 61
           ITSRDV++I+SKLSSDK K REEGIKLLN WLEGEK+I FCKF+G NTA LKP EIP  E
Sbjct: 4   ITSRDVEEIVSKLSSDKTKAREEGIKLLNAWLEGEKSIRFCKFLGHNTAMLKPNEIPHSE 63

Query: 62  TWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 110
           TWPF+  LLI+CVS+EISSSK+RLPKL+FAKTLR VVQ+AE  KFSG+
Sbjct: 64  TWPFLVTLLIRCVSLEISSSKKRLPKLVFAKTLRIVVQRAEDAKFSGK 111

BLAST of CSPI01G01350 vs. TrEMBL
Match: U5FMP3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08800g PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEG-EKAIDFCKFIGQNTAKLKPEEIPS 60
           M+TSRDVQ+++SKLSSDKAK REEGIKLLNTWLEG E++I FCK++GQNTAKLKP EIP 
Sbjct: 1   MVTSRDVQEVVSKLSSDKAKAREEGIKLLNTWLEGGERSIRFCKYLGQNTAKLKPNEIPH 60

Query: 61  PETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 110
            ETWPF+  LL+QCVS EISSSKRRLPK  FAKT+R V+Q+A+  KFSG+
Sbjct: 61  SETWPFLVTLLVQCVSSEISSSKRRLPKASFAKTMRIVIQRADDAKFSGK 110

BLAST of CSPI01G01350 vs. TrEMBL
Match: A0A067K4N0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11473 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-39
Identity = 81/109 (74.31%), Postives = 94/109 (86.24%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           M+TSRDVQ+I+SKLSSDKAK RE+GIKLLNTWLEGE++I FC F+GQNTAKLKP EIP  
Sbjct: 1   MVTSRDVQEIVSKLSSDKAKIREDGIKLLNTWLEGERSIKFCTFLGQNTAKLKPNEIPHS 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 110
           ETWPF+  LL +CVS+EIS+SKRRLPK   AKTLR VVQ+AE  KFSG+
Sbjct: 61  ETWPFLVTLLTKCVSLEISTSKRRLPKASLAKTLRIVVQRAEDAKFSGK 109

BLAST of CSPI01G01350 vs. TAIR10
Match: AT3G48190.1 (AT3G48190.1 ataxia-telangiectasia mutated)

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-31
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 1

Query: 9   DIISKLSSDKAKTR------EEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSPET 68
           D +S+ +  K K+       ++G+KLLNTWLEGE++I FC+F+ QNTAKLK +EIP+ ET
Sbjct: 816 DSLSRETKAKLKSEITGLLEKDGVKLLNTWLEGERSITFCRFLSQNTAKLKLDEIPNAET 875

Query: 69  WPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           WPF+ KLL+QCVSME+S SKRR+PK  FAKTLR VVQ+ E  KF G
Sbjct: 876 WPFLVKLLLQCVSMEVSGSKRRMPKPTFAKTLRVVVQRTEETKFPG 921

BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|700208479|gb|KGN63575.1| (hypothetical protein Csa_1G004905 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 110
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSGE 109

BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|778655635|ref|XP_011656922.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 108

BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|778655632|ref|XP_011656886.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 108

BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|659105399|ref|XP_008453087.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLR VVQKAEANKFSG
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRAVVQKAEANKFSG 108

BLAST of CSPI01G01350 vs. NCBI nr
Match: gi|659105403|ref|XP_008453088.1| (PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1

Query: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60
           MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP
Sbjct: 1   MITSRDVQDIISKLSSDKAKTREEGIKLLNTWLEGEKAIDFCKFIGQNTAKLKPEEIPSP 60

Query: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRGVVQKAEANKFSG 109
           ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLR VVQKAEANKFSG
Sbjct: 61  ETWPFITKLLIQCVSMEISSSKRRLPKLMFAKTLRAVVQKAEANKFSG 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATM_ARATH4.8e-3059.43Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LNW7_CUCSA7.4e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004905 PE=4 SV=1[more]
A0A061FTM5_THECC1.2e-4077.78Ataxia telangiectasia mutated, putative OS=Theobroma cacao GN=TCM_012074 PE=3 SV... [more]
A5BK76_VITVI4.0e-3975.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037238 PE=4 SV=1[more]
U5FMP3_POPTR6.8e-3973.64Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08800g PE=4 SV=1[more]
A0A067K4N0_JATCU8.8e-3974.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11473 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G48190.12.7e-3159.43 ataxia-telangiectasia mutated[more]
Match NameE-valueIdentityDescription
gi|700208479|gb|KGN63575.1|1.1e-53100.00hypothetical protein Csa_1G004905 [Cucumis sativus][more]
gi|778655635|ref|XP_011656922.1|4.1e-53100.00PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis sativus][more]
gi|778655632|ref|XP_011656886.1|4.1e-53100.00PREDICTED: serine/threonine-protein kinase ATM isoform X1 [Cucumis sativus][more]
gi|659105399|ref|XP_008453087.1|2.0e-5299.07PREDICTED: serine/threonine-protein kinase ATM isoform X2 [Cucumis melo][more]
gi|659105403|ref|XP_008453088.1|2.0e-5299.07PREDICTED: serine/threonine-protein kinase ATM isoform X3 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0016310 phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G01350.1CSPI01G01350.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37079FAMILY NOT NAMEDcoord: 1..109
score: 9.5
NoneNo IPR availablePANTHERPTHR37079:SF2SUBFAMILY NOT NAMEDcoord: 1..109
score: 9.5

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G01350Cucurbita moschata (Rifu)cmocpiB040
CSPI01G01350Cucurbita moschata (Rifu)cmocpiB197
CSPI01G01350Cucurbita moschata (Rifu)cmocpiB393
CSPI01G01350Cucumber (Chinese Long) v2cpicuB000
CSPI01G01350Cucumber (Chinese Long) v2cpicuB008
CSPI01G01350Melon (DHL92) v3.5.1cpimeB015
CSPI01G01350Melon (DHL92) v3.5.1cpimeB055
CSPI01G01350Watermelon (Charleston Gray)cpiwcgB002
CSPI01G01350Watermelon (Charleston Gray)cpiwcgB029
CSPI01G01350Watermelon (Charleston Gray)cpiwcgB093
CSPI01G01350Watermelon (97103) v1cpiwmB002
CSPI01G01350Watermelon (97103) v1cpiwmB099
CSPI01G01350Cucurbita pepo (Zucchini)cpecpiB020
CSPI01G01350Cucurbita pepo (Zucchini)cpecpiB361
CSPI01G01350Cucurbita pepo (Zucchini)cpecpiB522
CSPI01G01350Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G01350Bottle gourd (USVL1VR-Ls)cpilsiB035
CSPI01G01350Melon (DHL92) v3.6.1cpimedB014
CSPI01G01350Melon (DHL92) v3.6.1cpimedB049
CSPI01G01350Cucumber (Gy14) v2cgybcpiB010
CSPI01G01350Silver-seed gourdcarcpiB0396
CSPI01G01350Silver-seed gourdcarcpiB0532
CSPI01G01350Silver-seed gourdcarcpiB1042
CSPI01G01350Cucumber (Chinese Long) v3cpicucB013
CSPI01G01350Watermelon (97103) v2cpiwmbB013
CSPI01G01350Watermelon (97103) v2cpiwmbB079
CSPI01G01350Watermelon (97103) v2cpiwmbB091
CSPI01G01350Wax gourdcpiwgoB009
CSPI01G01350Wax gourdcpiwgoB058
CSPI01G01350Wax gourdcpiwgoB071
CSPI01G01350Wild cucumber (PI 183967)cpicpiB032
CSPI01G01350Wild cucumber (PI 183967)cpicpiB002
CSPI01G01350Cucumber (Gy14) v1cgycpiB108
CSPI01G01350Cucumber (Gy14) v1cgycpiB310
CSPI01G01350Cucurbita maxima (Rimu)cmacpiB049
CSPI01G01350Cucurbita maxima (Rimu)cmacpiB211
CSPI01G01350Cucurbita maxima (Rimu)cmacpiB405