CSPI01G00940 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G00940
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 557310 .. 557829 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACCCCAAAGCAAAAACAAACTCTTCTTCAACCTTGCCATATCCTCCGACTTTCATCGAAAAACATTGTCACCACCATCTTCTTCAAGTCGACAAAGGTATGTTACCTCTTTCTTTGCAATGTAAAAGATATGTATTTATATGTTATATATACATTATGTGACTCTTTTTGAACGTCGAAACGTCATCTTGAAATGTTGGTTGAATTCTTTTTATTTTTAGTTCCACGGCCTGGCCTGGTCAGTACACGTGGATGATCCGAATACTAAATGCACAATAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAAACGAATGTTTCATCTATACGAGACGATTTGCTCAACAACTTTTGAATGGATACAATTTGGAAGAACCACCTCAACTTCTTCCAAAGACCGGTCTTCAACCTTTAATAACAAACTATTCAAGTGAAACGGGATTGACGAGCCAACAATATCATGATAATGTGGGACTTATTAGTGAATGGTATGTAAAACACAATTTGGTTTAA

mRNA sequence

ATGGTAACCCCAAAGCAAAAACAAACTCTTCTTCAACCTTGCCATATCCTCCGACTTTCATCGAAAAACATTGTCACCACCATCTTCTTCAAGTCGACAAAGTTCCACGGCCTGGCCTGGTCAGTACACGTGGATGATCCGAATACTAAATGCACAATAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAAACGAATGTTTCATCTATACGAGACGATTTGCTCAACAACTTTTGAATGGATACAATTTGGAAGAACCACCTCAACTTCTTCCAAAGACCGGTCTTCAACCTTTAATAACAAACTATTCAAGTGAAACGGGATTGACGAGCCAACAATATCATGATAATGTGGGACTTATTAGTGAATGGTATGTAAAACACAATTTGGTTTAA

Coding sequence (CDS)

ATGGTAACCCCAAAGCAAAAACAAACTCTTCTTCAACCTTGCCATATCCTCCGACTTTCATCGAAAAACATTGTCACCACCATCTTCTTCAAGTCGACAAAGTTCCACGGCCTGGCCTGGTCAGTACACGTGGATGATCCGAATACTAAATGCACAATAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAAACGAATGTTTCATCTATACGAGACGATTTGCTCAACAACTTTTGAATGGATACAATTTGGAAGAACCACCTCAACTTCTTCCAAAGACCGGTCTTCAACCTTTAATAACAAACTATTCAAGTGAAACGGGATTGACGAGCCAACAATATCATGATAATGTGGGACTTATTAGTGAATGGTATGTAAAACACAATTTGGTTTAA
Homology
[Close]
BLAST of CSPI01G00940 vs. TrEMBL
Match: A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 32  STKFHGLAWSVHVDDPNTKCTIVEEQICIDRVENECFIYTRRFAQQLLNGYNLEEPPQLL 91
           +TK       VH+DD NTK   VEEQICIDRVE++CFI   RF +QLLNGYNLEEPPQLL
Sbjct: 175 TTKATTTQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLL 234

Query: 92  PKT 95
           P++
Sbjct: 235 PES 237

[Close]
BLAST of CSPI01G00940 vs. NCBI nr
Match: gi|700210011|gb|KGN65107.1| (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.4e-14
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 32  STKFHGLAWSVHVDDPNTKCTIVEEQICIDRVENECFIYTRRFAQQLLNGYNLEEPPQLL 91
           +TK       VH+DD NTK   VEEQICIDRVE++CFI   RF +QLLNGYNLEEPPQLL
Sbjct: 175 TTKATTTQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLL 234

Query: 92  PKT 95
           P++
Sbjct: 235 PES 237

The following BLAST results are available for this feature:
BLAST of CSPI01G00940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G00940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWA5_CUCSA2.4e-1465.08Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1[more]
BLAST of CSPI01G00940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G00940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210011|gb|KGN65107.1|3.4e-1465.08hypothetical protein Csa_1G224380 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G00940.1CSPI01G00940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G00940MELO3C026251.2Melon (DHL92) v3.6.1cpimedB049
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G00940Cucurbita pepo (Zucchini)cpecpiB361
CSPI01G00940Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G00940Bottle gourd (USVL1VR-Ls)cpilsiB070
CSPI01G00940Melon (DHL92) v3.6.1cpimedB014
CSPI01G00940Cucumber (Gy14) v2cgybcpiB001
CSPI01G00940Silver-seed gourdcarcpiB0396
CSPI01G00940Silver-seed gourdcarcpiB0399
CSPI01G00940Silver-seed gourdcarcpiB1083
CSPI01G00940Cucumber (Chinese Long) v3cpicucB001
CSPI01G00940Cucumber (Chinese Long) v3cpicucB028
CSPI01G00940Watermelon (97103) v2cpiwmbB079
CSPI01G00940Watermelon (97103) v2cpiwmbB091
CSPI01G00940Wax gourdcpiwgoB009
CSPI01G00940Wax gourdcpiwgoB080
CSPI01G00940Wild cucumber (PI 183967)cpicpiB032
CSPI01G00940Wild cucumber (PI 183967)cpicpiB014
CSPI01G00940Cucumber (Gy14) v1cgycpiB310
CSPI01G00940Cucurbita maxima (Rimu)cmacpiB049
CSPI01G00940Cucurbita maxima (Rimu)cmacpiB085
CSPI01G00940Cucurbita maxima (Rimu)cmacpiB109
CSPI01G00940Cucurbita maxima (Rimu)cmacpiB227
CSPI01G00940Cucurbita maxima (Rimu)cmacpiB238
CSPI01G00940Cucurbita moschata (Rifu)cmocpiB040
CSPI01G00940Cucurbita moschata (Rifu)cmocpiB079
CSPI01G00940Cucurbita moschata (Rifu)cmocpiB088
CSPI01G00940Cucurbita moschata (Rifu)cmocpiB213
CSPI01G00940Cucurbita moschata (Rifu)cmocpiB226
CSPI01G00940Cucumber (Chinese Long) v2cpicuB000
CSPI01G00940Cucumber (Chinese Long) v2cpicuB024
CSPI01G00940Melon (DHL92) v3.5.1cpimeB015
CSPI01G00940Melon (DHL92) v3.5.1cpimeB055
CSPI01G00940Watermelon (Charleston Gray)cpiwcgB002
CSPI01G00940Watermelon (Charleston Gray)cpiwcgB083
CSPI01G00940Watermelon (Charleston Gray)cpiwcgB093
CSPI01G00940Watermelon (97103) v1cpiwmB002
CSPI01G00940Watermelon (97103) v1cpiwmB099