BhiUN533G12 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN533G12
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribosomal protein S3
Location	Contig533 : 256457 .. 256864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

mRNA sequence

ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

Coding sequence (CDS)

ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

Protein sequence

MKEGLVINLESLLRHGKEDFREQILDREKKGDKVKSKRIWHEKEIISVKLDLNRSSDSSRSVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRPLEDTGTRAVVKEAHWACFDRVSGEVECRYQ

Homology

[Close]

BLAST of BhiUN533G12 vs. TrEMBL
Match: tr|A0A178U6G4|A0A178U6G4_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG02800 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+L  NRSSDSSR S       RMG++FPSV+PI   KKRGRTL+MS TD TSSNARR
Sbjct: 8   ISVRLGKNRSSDSSRFSEGDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARR 67

Query: 106 PLEDTGTRAV 115
           PLE+T  +++
Sbjct: 68  PLENTRNQSM 76

[Close]

BLAST of BhiUN533G12 vs. TrEMBL
Match: tr|A0A142D7W9|A0A142D7W9_ORYMI (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

[Close]

BLAST of BhiUN533G12 vs. TrEMBL
Match: tr|A0A141NB76|A0A141NB76_ORYMI (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

[Close]

BLAST of BhiUN533G12 vs. TrEMBL
Match: tr|A0A2G2Z6K0|A0A2G2Z6K0_CAPAN (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_15680 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSRSVRATAKV-RMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+LDLNRSSDSS  + A  ++ RMGQ+F S  P L+ +K  RTL+M   D TSS ARR
Sbjct: 8   ISVRLDLNRSSDSSWYIEADHEIHRMGQSFSS--PRLEYQK--RTLQMPGADTTSSKARR 67

Query: 106 PLEDT 110
           P+EDT
Sbjct: 68  PMEDT 68

[Close]

BLAST of BhiUN533G12 vs. TrEMBL
Match: tr|B9SU91|B9SU91_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0571590 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSRSVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRP 105
           ISV+LDLNRSSDSSR      +     A   + PILK KKRGRTL+MS TD TSSN    
Sbjct: 8   ISVRLDLNRSSDSSRFSEGDCESHQKWASLFLCPILK-KKRGRTLQMSGTDTTSSNVEDH 67

Query: 106 LEDTGTRA 114
               GTRA
Sbjct: 68  RNIPGTRA 74

[Close]

BLAST of BhiUN533G12 vs. NCBI nr
Match: OAO89239.1 (hypothetical protein AXX17_ATUG02800 (mitochondrion) [Arabidopsis thaliana])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+L  NRSSDSSR S       RMG++FPSV+PI   KKRGRTL+MS TD TSSNARR
Sbjct: 8   ISVRLGKNRSSDSSRFSEGDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARR 67

Query: 106 PLEDTGTRAV 115
           PLE+T  +++
Sbjct: 68  PLENTRNQSM 76

[Close]

BLAST of BhiUN533G12 vs. NCBI nr
Match: YP_009241985.1 (ribosomal protein S3 (mitochondrion) [Oryza minuta] >AMA06704.1 ribosomal protein S3 (mitochondrion) [Oryza minuta])

HSP 1 Score: 67.0 bits (162), Expect = 5.6e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

[Close]

BLAST of BhiUN533G12 vs. NCBI nr
Match: YP_009242005.1 (ribosomal protein S3 (mitochondrion) [Oryza minuta] >AMQ23369.1 ribosomal protein S3 (mitochondrion) [Oryza minuta])

HSP 1 Score: 67.0 bits (162), Expect = 5.6e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

[Close]

BLAST of BhiUN533G12 vs. NCBI nr
Match: PHT77628.1 (hypothetical protein T459_15680 [Capsicum annuum])

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSRSVRATAKV-RMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+LDLNRSSDSS  + A  ++ RMGQ+F S  P L+ +K  RTL+M   D TSS ARR
Sbjct: 8   ISVRLDLNRSSDSSWYIEADHEIHRMGQSFSS--PRLEYQK--RTLQMPGADTTSSKARR 67

Query: 106 PLEDT 110
           P+EDT
Sbjct: 68  PMEDT 68

[Close]

BLAST of BhiUN533G12 vs. NCBI nr
Match: EEF32829.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-05
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 46  ISVKLDLNRSSDSSRSVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRP 105
           ISV+LDLNRSSDSSR      +     A   + PILK KKRGRTL+MS TD TSSN    
Sbjct: 8   ISVRLDLNRSSDSSRFSEGDCESHQKWASLFLCPILK-KKRGRTLQMSGTDTTSSNVEDH 67

Query: 106 LEDTGTRA 114
               GTRA
Sbjct: 68  RNIPGTRA 74

The following BLAST results are available for this feature:

BLAST of BhiUN533G12 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of BhiUN533G12 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN533G12 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A178U6G4\|A0A178U6G4_ARATH	6.7e-10	62.86	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG02800 PE=4 ...	[more]
tr\|A0A142D7W9\|A0A142D7W9_ORYMI	3.7e-08	52.87	Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1	[more]
tr\|A0A141NB76\|A0A141NB76_ORYMI	3.7e-08	52.87	Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1	[more]
tr\|A0A2G2Z6K0\|A0A2G2Z6K0_CAPAN	2.2e-05	58.46	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_15680 PE=4 SV=1	[more]
tr\|B9SU91\|B9SU91_RICCO	6.5e-05	55.88	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0571590 PE=4 SV=1	[more]

BLAST of BhiUN533G12 vs. NCBI nr


Match Name	E-value	Identity	Description
OAO89239.1	1.0e-09	62.86	hypothetical protein AXX17_ATUG02800 (mitochondrion) [Arabidopsis thaliana]	[more]
YP_009241985.1	5.6e-08	52.87	ribosomal protein S3 (mitochondrion) [Oryza minuta] >AMA06704.1 ribosomal protei...	[more]
YP_009242005.1	5.6e-08	52.87	ribosomal protein S3 (mitochondrion) [Oryza minuta] >AMQ23369.1 ribosomal protei...	[more]
PHT77628.1	3.4e-05	58.46	hypothetical protein T459_15680 [Capsicum annuum]	[more]
EEF32829.1	9.8e-05	55.88	conserved hypothetical protein [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043229	intracellular organelle

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN533M12	BhiUN533M12	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..109

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN533G12	Wild cucumber (PI 183967)	cpiwgoB313
BhiUN533G12	Cucumber (Chinese Long) v3	cucwgoB317
BhiUN533G12	Cucumber (Chinese Long) v2	cuwgoB311
BhiUN533G12	Bottle gourd (USVL1VR-Ls)	lsiwgoB466
BhiUN533G12	Melon (DHL92) v3.6.1	medwgoB560
BhiUN533G12	Melon (DHL92) v3.5.1	mewgoB556
BhiUN533G12	Watermelon (Charleston Gray)	wcgwgoB450
BhiUN533G12	Watermelon (97103) v2	wgowmbB282
BhiUN533G12	Watermelon (97103) v1	wgowmB291
BhiUN533G12	Silver-seed gourd	carwgoB0299
BhiUN533G12	Silver-seed gourd	carwgoB1126
BhiUN533G12	Wax gourd	wgowgoB036
BhiUN533G12	Cucumber (Gy14) v1	cgywgoB531
BhiUN533G12	Cucumber (Gy14) v2	cgybwgoB301
BhiUN533G12	Cucurbita maxima (Rimu)	cmawgoB0346
BhiUN533G12	Cucurbita maxima (Rimu)	cmawgoB1028
BhiUN533G12	Cucurbita moschata (Rifu)	cmowgoB0335
BhiUN533G12	Cucurbita moschata (Rifu)	cmowgoB1022
BhiUN533G12	Cucurbita pepo (Zucchini)	cpewgoB0408
BhiUN533G12	Cucurbita pepo (Zucchini)	cpewgoB0802
BhiUN533G12	Cucurbita pepo (Zucchini)	cpewgoB1122