BhiUN509G1 (gene) Wax gourd

Overview
NameBhiUN509G1
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionsmall EDRK-rich factor 2-like
LocationContig509 : 5546 .. 8761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAGCGGAAATCAGAGAGAGCGAGATCGAGAAAGGGCTCAAGCTAGAGCTGGAAATAAGTCTAAGCAACCAAGAAACGATGGCTTGACTCCTCAACAGCGACGTCAAAGGTTCACTCTCTCCCCTTCTTCATAACATAATTATTTACTTTTTACTTCATGAATTTTTATTATACGTCGGGTATGTTTAGAATACCTTTTCAACTGTATATTTTTAAAATAATTTATTTAAATTTTTAAAATAAATGAAAGTGTTTGATAACTATTTGAATATTTAAGTAATCTGTTTTTATCAAAAGTTTTTAAATAAAAATATGTTTTTTCAAAAATACTTTTTTCATAAGTTAATTCAAACAGGCAACGTTCTAAAGATTTGGGCACAAATTAAAATTTTGAAAAAAATTTAGATATCATCTTTAAATTTGGAAACTATTAGTTGTAAATAAAGAAATATGTTTTTTAGTAGAAAATTGGTGTTACATTGGCTTTTCGTTAGAAATTAAGCTAATGGTGTTACAAGCTCAAATATAAAATTGTAGAGTTTAAAACCTCAAGAACCCAAATACAACCTAATCTAAGACTAGAAGTTTTTTTTTTCCCCTTAAAATTAAATATTTGAAGATCTACTATACTATAAGACTTCATAGAACACAAAATTGAAAATTTTGGCATTCAACACTTTTTCAATTAAAAAATTGATTAAAAAAGTTTTTGAGATTGAGTTAGGATGGTGTGTTGTTGTGCTTAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGGAAAGCCGCAATGGCTGCCGGAGAAAACAATGCCGGTGGCAGCGGAGGTAAAAAAAATGTAACTGCAGATTCAATCGGGAGTAAATAGGAGAAGATTAAAGTAAAATTGATCCAGTGTTTATGGATTCATCTGCGTTTGAACAAGTTTGAGTCTGCTTTTGAATGGTTATTTGTGTAGTTTTTGTTTGGCTTCAAAAATGGGTTGTTCTCTCTGCAAACTCACTCATGTTTGAATCAAAATGATGTCAATTTCTTTTCAATTCCAGTGGCCTTTTTTTGTTGGGTGAAGAATGAAGATTTTTCTTTCTTTGATCATAATATTATTCAGTATGATTATGTCTATTGGCATCACGAGAAATTGATTGACAATTTGACAACTATTGTGTTCAACTATGAAGCACAAATAATTCATGTGAGGCAAAAAATCTGTATCAGACATGTATCAGATACCGATACTTCCAGATATTTTTCAAATATCTGACACGCAAATTAACGTATCTATTTCTATGCATATTTTTTTTAAAATAAAAAAGACAAACAAAAAATAAATAAAAGATCAAACCCCAGAATCATCTAATAATTTTCATCTTCACATTTGAGTCTCCATAGAATCCATCAAAATATAAATCATTTGGATATTTTCAATAATTCAACGAAGAAGTTCTTCCTTTATCTTCATATTTCTCTCTCTGATCTAATTATTCTTCTTTGTAATATGAGTCACTTTTCTATTGCATTTTATTAACTATTGTACTTCAACATCTTAGATGTTGCCTTTTGATTTTCTTATATTGTATTTCAGTGTCTGTATTCTATTTTGTGCTATTGTTATTAACTTGTAAGCTAAATTTATCTATATCCTAGATTTTTTTAAGAAAAAGAACATATATCTTCAATGTATCAGTATCTTTATTTTTTTAGAAATATATATATTAAAAAAATATATAAAAAAAATGATGTATCCTTAAACGTATCTATATCTTAATTTTTTAGAAATTGATGAATTGCTATATCCGATCGTATCTGTATCATGTAACCGTATCTGTACTTCATAGGTGTTCAATGAGTCATCTTGGTGGAAAAAAGACAGATGACATTATATATAGACATACTTTTTTAGTCCATAGGAGAGAGGTTCGGGATTTGTGTCAATTTACTCTACGTTTTAAATTAAAGAATGAAGCATTCAACATTTAGAAAATGCTCGACTTTGGCCTCTTATTAATGGTATAATAAATCACAAAAAAAATTAAGTAGAAAATAATTATCAAAGTAAATAATTATAAGTTAAATTATAGAAAATATTTTTGAACTCTTTAATGTTTTAATATATCATTAAACTTTCAATATCAGTTAATGACTCAATTATAACAACAATTAATTATAGTGATACGCAAGGTTTAATGTGTCATTGTAACATACAATTACGGTAGGTTGCTAATAATCAATATATAATTTTAAACAAATAATAGTAATTTGACAATCTTTTTTGGCCACTTATTCCCAAGTACGTACTCCCTATCTAACCAACTACTTTAGCGCATTTTTCATTTCTGGAATGATTTTTTTTTTTTTTTTGGCATTCTTTCTTTGACTACTCGTAGAAGTTTCTTGGATGGGAGAAGTGTTCAAGATGGATAGTATTGGTTTCCTACCGTGGTTAGGTCGAGTTTAGGTTGTTTAGGATGATCTTTTCAATCACCAGATTGATATTGTAACAAGGTAGTACTACAAGAAAGAACGATTTTTCCAGCACCAAATCTTGTTGGAAAAGCCTAGAAAACCTTCGTTAGTACGATAGTTTTTCATTATTATATATTATAGTGACGTCCCAACAAGATCATGGGGTCAACTACCAGTTTTTTATGGTCGAGAGGATGTTTTGGTCACTAAACTACAAGAAGTGGTTTGAAATCCTTATTGGCGAGTTAAAAGTTGTTTCAAGAACAAGTACTTGCTCGAGATCCAACAGTTGATGTAAGAGAAATTATCGCAATCAAGGTTACAACCATCACTGCATATAAGATAATCTTGCCTACGTACATTAAATGTCAAATACAATGCATTATTTGAGTTACTTGTGGGATAAGAGTGGGTTCAATTAGAGTGGTAATGAAATGATGCTATACGGTGAGAAAGTTGCATTCAATGAATGATTCACAATTGTGTCTCATACAATCTACTAATTGTGTACACTTCATTACCTTCTATCTTATGTTGTAGACTCACCGCGAGACAAGCAGGCTATATGTAAAACCATTCTTATACTTCTATGCTTTGGGGAGCTTTCTGGGTGAGATTGTGTAATAGGACAAAACGTTGTCAATGCACAAGATGATGAAAATGAAATTCGATTGGAGGATGTAAACTCCCAACATGGGTTTGATGCTGATTTGGATGTCATTTTCAAAGTTGGACCTTTCCCCTTTGACTAG

mRNA sequence

TGAAAGCGGAAATCAGAGAGAGCGAGATCGAGAAAGGGCTCAAGCTAGAGCTGGAAATAAGTCTAAGCAACCAAGAAACGATGGCTTGACTCCTCAACAGCGACGTCAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGGAAAGCCGCAATGGCTGCCGGAGAAAACAATGCCGGTGGCAGCGGAGGACAAAACGTTGTCAATGCACAAGATGATGAAAATGAAATTCGATTGGAGGATGTAAACTCCCAACATGGGTTTGATGCTGATTTGGATGTCATTTTCAAAGTTGGACCTTTCCCCTTTGACTAG

Coding sequence (CDS)

TGAAAGCGGAAATCAGAGAGAGCGAGATCGAGAAAGGGCTCAAGCTAGAGCTGGAAATAAGTCTAAGCAACCAAGAAACGATGGCTTGACTCCTCAACAGCGACGTCAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGGAAAGCCGCAATGGCTGCCGGAGAAAACAATGCCGGTGGCAGCGGAGGACAAAACGTTGTCAATGCACAAGATGATGAAAATGAAATTCGATTGGAGGATGTAAACTCCCAACATGGGTTTGATGCTGATTTGGATGTCATTTTCAAAGTTGGACCTTTCCCCTTTGACTAG

Protein sequence

ESGNQRERDRERAQARAGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAGGSGGQNVVNAQDDENEIRLEDVNSQHGFDADLDVIFKVGPFPFD
Homology
[Close]
BLAST of BhiUN509G1 vs. TrEMBL
Match: tr|A0A0S3SW56|A0A0S3SW56_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G051700 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 3  GNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 61
          GNQR XXXXXXXXXXG K+KQPRNDGLTP+QRR+RDAKALQEK A+KAA AAG NNAG
Sbjct: 4  GNQRXXXXXXXXXXXGGKTKQPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAG 61

[Close]
BLAST of BhiUN509G1 vs. TrEMBL
Match: tr|A0A2P5DBZ5|A0A2P5DBZ5_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_078410 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 1  ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
          E GNQRE XXXXXXX  G K K P+NDGLTP+QRR+RDAKALQEK ARKAA A G +N G
Sbjct: 1  ERGNQRERXXXXXXXRAGQKPKNPKNDGLTPEQRRERDAKALQEKAARKAAQAGGGSNGG 60

[Close]
BLAST of BhiUN509G1 vs. TrEMBL
Match: tr|A0A251N2T4|A0A251N2T4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G201600 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1   ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
           E G+QRE  XXXXX   G KSKQP+NDGLTP+QRRQRDAKALQEK A+KAA A G     
Sbjct: 95  ERGSQRERDXXXXXARSGGKSKQPKNDGLTPEQRRQRDAKALQEKAAKKAAQAGGV---- 154

Query: 61  GSGGQN 67
            SGG+N
Sbjct: 155 -SGGKN 155

[Close]
BLAST of BhiUN509G1 vs. TrEMBL
Match: tr|A0A1J7HDZ9|A0A1J7HDZ9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
          E GNQRE          G KSKQ + DGLTP+QRR+RDAKALQEKTA+KAA AAG +NAG
Sbjct: 6  ERGNQRE-KDRERAQARGAKSKQ-KEDGLTPEQRRERDAKALQEKTAKKAAQAAGGSNAG 65

Query: 61 GSGGQ 66
          GSG +
Sbjct: 66 GSGSK 68

[Close]
BLAST of BhiUN509G1 vs. TrEMBL
Match: tr|A0A251N0J5|A0A251N0J5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G201600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 0 

Query: 3   GNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAGGS 62
           G+QREXXXXXXXXX G KSKQP+NDGLTP+QRRQRDAKALQEK A+KAA A G      S
Sbjct: 97  GSQREXXXXXXXXXSGGKSKQPKNDGLTPEQRRQRDAKALQEKAAKKAAQAGGV-----S 155

Query: 63  GGQN 67
           GG+N
Sbjct: 157 GGKN 155

[Close]
BLAST of BhiUN509G1 vs. NCBI nr
Match: XP_024933440.1 (putative SERF-like protein, partial [Ziziphus jujuba])

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-11
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 1  ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
          E GNQR+          GNK KQP+NDGLTP+QRR+RDAKALQEKTARKAA  AG NNA 
Sbjct: 12 ERGNQRDKDRERAQARAGNKRKQPKNDGLTPEQRRERDAKALQEKTARKAAQGAGGNNAV 71

Query: 61 GSGGQ 66
          G GG+
Sbjct: 72 GVGGK 76

[Close]
BLAST of BhiUN509G1 vs. NCBI nr
Match: BAT97150.1 (hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis])

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 3  GNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 61
          GNQR XXXXXXXXXXG K+KQPRNDGLTP+QRR+RDAKALQEK A+KAA AAG NNAG
Sbjct: 4  GNQRXXXXXXXXXXXGGKTKQPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAG 61

[Close]
BLAST of BhiUN509G1 vs. NCBI nr
Match: XP_022953785.1 (putative SERF-like protein [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 23 QPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAGGSG 64
          QPRNDGLTP+QRR+RDAKALQEKTARKAAMAAG  NAGG G
Sbjct: 33 QPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGINAGGGG 73

[Close]
BLAST of BhiUN509G1 vs. NCBI nr
Match: RDX87344.1 (hypothetical protein CR513_31195, partial [Mucuna pruriens])

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0 

Query: 1  ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
          E GNQRE          G K+KQ +NDGLTP+QR++RDAKALQEK A+KAA AAG NNAG
Sbjct: 16 ERGNQREKDRERAQARAGGKNKQTKNDGLTPEQRKERDAKALQEKAAKKAAQAAGGNNAG 75

Query: 61 G------SGGQNV-VNAQDDE 75
                 S  +NV +NA+ D+
Sbjct: 76 TREKCGCSRNENVKMNARQDK 96

[Close]
BLAST of BhiUN509G1 vs. NCBI nr
Match: XP_023547529.1 (putative SERF-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 50/63 (79.37%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 1  ESGNQREXXXXXXXXXXGNKSKQPRNDGLTPQQRRQRDAKALQEKTARKAAMAAGENNAG 60
          E GNQ  XXXXXXXXXX     QPRNDGLTP+QRR+RDAKALQEKTARKAAMAAG  NAG
Sbjct: 11 ERGNQXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDAKALQEKTARKAAMAAGGINAG 70

Query: 61 GSG 64
          G G
Sbjct: 71 GGG 73

The following BLAST results are available for this feature:
BLAST of BhiUN509G1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of BhiUN509G1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of BhiUN509G1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0S3SW56|A0A0S3SW56_PHAAN3.3e-0984.48Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G... [more]
tr|A0A2P5DBZ5|A0A2P5DBZ5_PARAD4.8e-0873.33Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
tr|A0A251N2T4|A0A251N2T4_PRUPE8.2e-0868.18Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G201600 PE=4 SV=1[more]
tr|A0A1J7HDZ9|A0A1J7HDZ9_LUPAN1.4e-0764.62Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 S... [more]
tr|A0A251N0J5|A0A251N0J5_PRUPE2.4e-0775.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G201600 PE=4 SV=1[more]
BLAST of BhiUN509G1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024933440.17.1e-1166.15putative SERF-like protein, partial [Ziziphus jujuba][more]
BAT97150.15.1e-0984.48hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis][more]
XP_022953785.14.3e-0887.80putative SERF-like protein [Cucurbita moschata][more]
RDX87344.15.6e-0854.32hypothetical protein CR513_31195, partial [Mucuna pruriens][more]
XP_023547529.17.3e-0879.37putative SERF-like protein [Cucurbita pepo subsp. pepo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
BhiUN509M1BhiUN509M1mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 3..35
e-value: 1.9E-7
score: 31.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR13596:SF5SUBFAMILY NOT NAMEDcoord: 3..62
NoneNo IPR availablePANTHERPTHR13596SMALL EDRK-RICH FACTOR 1coord: 3..62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
BhiUN509G1MELO3C021034Melon (DHL92) v3.5.1mewgoB201
BhiUN509G1ClCG09G008920Watermelon (Charleston Gray)wcgwgoB015
BhiUN509G1MELO3C021034.2Melon (DHL92) v3.6.1medwgoB203
BhiUN509G1Cla97C09G171710Watermelon (97103) v2wgowmbB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None