BhiUN425G28 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN425G28
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	Contig425 : 343162 .. 343452 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTTCTCGAGTTCTGTCATGATCGTGCACTTGACAAAAGAGCTTTACAAGCAGCATTGCCCTTCTTCACTCACGCGATATTACTTGATTGGGTTTTTACCCATTGTCCAAGATTCCTCACTATTGCCCCCCGTGGGAGTCTAG

mRNA sequence

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTTCTCGAGTTCTGTCATGATCGTGCACTTGACAAAAGAGCTTTACAAGCAGCATTGCCCTTCTTCACTCACGCGATATTACTTGATTGGGTTTTTACCCATTGTCCAAGATTCCTCACTATTGCCCCCCGTGGGAGTCTAG

Coding sequence (CDS)

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTTCTCGAGTTCTGTCATGATCGTGCACTTGACAAAAGAGCTTTACAAGCAGCATTGCCCTTCTTCACTCACGCGATATTACTTGATTGGGTTTTTACCCATTGTCCAAGATTCCTCACTATTGCCCCCCGTGGGAGTCTAG

Protein sequence

MGFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELYKQHCPSSLTRYYLIGFLPIVQDSSLLPPVGV

Homology

[Close]

BLAST of BhiUN425G28 vs. TrEMBL
Match: tr|A0A2P5WD91|A0A2P5WD91_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.2e-25
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLT 61
           G   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H T
Sbjct: 65  GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124

Query: 62  KELYKQHCP 71
           KELY++  P
Sbjct: 125 KELYERALP 133

[Close]

BLAST of BhiUN425G28 vs. TrEMBL
Match: tr|A0A2P5S332|A0A2P5S332_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09636 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 163 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 222

Query: 66  KQHCP 71
           ++  P
Sbjct: 223 ERALP 227

[Close]

BLAST of BhiUN425G28 vs. TrEMBL
Match: tr|A0A2P5S000|A0A2P5S000_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10686 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 75  IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 134

Query: 66  KQHCP 71
           ++  P
Sbjct: 135 ERALP 139

[Close]

BLAST of BhiUN425G28 vs. TrEMBL
Match: tr|A0A2P5SQD7|A0A2P5SQD7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01736 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 84  IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 143

Query: 66  KQHCP 71
           ++  P
Sbjct: 144 ERALP 148

[Close]

BLAST of BhiUN425G28 vs. TrEMBL
Match: tr|A0A0A9RWP6|A0A0A9RWP6_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-19
Identity = 52/66 (78.79%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 31  KNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELYKQHCPSSLTRYYLIGFLPIVQDSSL 90
           +   PPRLTAAAGTELAGAS SS VMI H TKELYK+HCPSSLTRY  IG  PIVQDS L
Sbjct: 73  RTLAPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 132

Query: 91  LPPVGV 97
           LPPVGV
Sbjct: 133 LPPVGV 138

[Close]

BLAST of BhiUN425G28 vs. NCBI nr
Match: PPR89027.1 (hypothetical protein GOBAR_AA31647 [Gossypium barbadense])

HSP 1 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 2   GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLT 61
           G   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H T
Sbjct: 65  GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124

Query: 62  KELYKQHCP 71
           KELY++  P
Sbjct: 125 KELYERALP 133

[Close]

BLAST of BhiUN425G28 vs. NCBI nr
Match: PPD92383.1 (hypothetical protein GOBAR_DD10686 [Gossypium barbadense])

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 75  IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 134

Query: 66  KQHCP 71
           ++  P
Sbjct: 135 ERALP 139

[Close]

BLAST of BhiUN425G28 vs. NCBI nr
Match: PPD93439.1 (hypothetical protein GOBAR_DD09636 [Gossypium barbadense])

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 163 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 222

Query: 66  KQHCP 71
           ++  P
Sbjct: 223 ERALP 227

[Close]

BLAST of BhiUN425G28 vs. NCBI nr
Match: PPE01242.1 (hypothetical protein GOBAR_DD01736 [Gossypium barbadense])

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-24
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASFSSSVMIVHLTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGAS SS VMI H TKELY
Sbjct: 84  IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 143

Query: 66  KQHCP 71
           ++  P
Sbjct: 144 ERALP 148

[Close]

BLAST of BhiUN425G28 vs. NCBI nr
Match: PUZ39272.1 (hypothetical protein GQ55_9G274100 [Panicum hallii var. hallii])

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 56 MIVHLTKELYKQHCPSSLTRYYLIGFLPIVQDSSLLPPVGV 97
          MI H TKELYK+HCPSSLTRY  IG  PIVQDS LLPPVGV
Sbjct: 1  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGV 41

The following BLAST results are available for this feature:

BLAST of BhiUN425G28 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of BhiUN425G28 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN425G28 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5WD91\|A0A2P5WD91_GOSBA	5.2e-25	84.06	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV...	[more]
tr\|A0A2P5S332\|A0A2P5S332_GOSBA	2.6e-24	87.69	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09636 PE=4 SV...	[more]
tr\|A0A2P5S000\|A0A2P5S000_GOSBA	2.6e-24	87.69	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10686 PE=4 SV...	[more]
tr\|A0A2P5SQD7\|A0A2P5SQD7_GOSBA	2.6e-24	87.69	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01736 PE=4 SV...	[more]
tr\|A0A0A9RWP6\|A0A0A9RWP6_ARUDO	4.3e-19	78.79	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of BhiUN425G28 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR89027.1	7.9e-25	84.06	hypothetical protein GOBAR_AA31647 [Gossypium barbadense]	[more]
PPD92383.1	3.9e-24	87.69	hypothetical protein GOBAR_DD10686 [Gossypium barbadense]	[more]
PPD93439.1	3.9e-24	87.69	hypothetical protein GOBAR_DD09636 [Gossypium barbadense]	[more]
PPE01242.1	3.9e-24	87.69	hypothetical protein GOBAR_DD01736 [Gossypium barbadense]	[more]
PUZ39272.1	6.1e-09	80.49	hypothetical protein GQ55_9G274100 [Panicum hallii var. hallii]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN425M28	BhiUN425M28	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN425G28	Cucumber (Gy14) v1	cgywgoB532
BhiUN425G28	Cucumber (Gy14) v2	cgybwgoB315
BhiUN425G28	Cucurbita maxima (Rimu)	cmawgoB0352
BhiUN425G28	Cucurbita moschata (Rifu)	cmowgoB0342
BhiUN425G28	Cucurbita pepo (Zucchini)	cpewgoB0809
BhiUN425G28	Cucurbita pepo (Zucchini)	cpewgoB1129
BhiUN425G28	Wild cucumber (PI 183967)	cpiwgoB327
BhiUN425G28	Cucumber (Chinese Long) v3	cucwgoB331
BhiUN425G28	Cucumber (Chinese Long) v2	cuwgoB324
BhiUN425G28	Bottle gourd (USVL1VR-Ls)	lsiwgoB467
BhiUN425G28	Melon (DHL92) v3.6.1	medwgoB562
BhiUN425G28	Melon (DHL92) v3.5.1	mewgoB558
BhiUN425G28	Watermelon (Charleston Gray)	wcgwgoB461
BhiUN425G28	Watermelon (97103) v2	wgowmbB395
BhiUN425G28	Watermelon (97103) v1	wgowmB407
BhiUN425G28	Silver-seed gourd	carwgoB0300
BhiUN425G28	Silver-seed gourd	carwgoB1127