BhiUN384G47 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN384G47
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA-directed DNA polymerase
Location	Contig384 : 635434 .. 635761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTTGTTAAGGAAGAGCAACCAAAGGAAAAGGTAAGTGAACTAGAATCATCTTCAGGTAAGTCTTCTAAACATATACCTTTTGTGCCTAATAGTCCTTATCCTCAAAGGTTCCAGAAAAAGATGTTAGATGAGCAATTTTTTAAGAAGTTGCATATTAATATTCCAGTCTTAGAAGCTTTAGAACAAATGCCTAATTATGTGAAATTCATGAAAGATATTCTATCAAAGAATAATAAGTTTAAGAAATATGAAATGATTGATATGACTGAAGAGTATGATGTTGTGCTGCAGAAAAAGTTGCCACAAAGGCTCAAAGATCCAGGGA

mRNA sequence

GAAGTTGTTAAGGAAGAGCAACCAAAGGAAAAGGTAAGTGAACTAGAATCATCTTCAGGTAAGTCTTCTAAACATATACCTTTTGTGCCTAATAGTCCTTATCCTCAAAGGTTCCAGAAAAAGATGTTAGATGAGCAATTTTTTAAGAAGTTGCATATTAATATTCCAGTCTTAGAAGCTTTAGAACAAATGCCTAATTATGTGAAATTCATGAAAGATATTCTATCAAAGAATAATAAGTTTAAGAAATATGAAATGATTGATATGACTGAAGAGTATGATGTTGTGCTGCAGAAAAAGTTGCCACAAAGGCTCAAAGATCCAGGGA

Coding sequence (CDS)

GAAGTTGTTAAGGAAGAGCAACCAAAGGAAAAGGTAAGTGAACTAGAATCATCTTCAGGTAAGTCTTCTAAACATATACCTTTTGTGCCTAATAGTCCTTATCCTCAAAGGTTCCAGAAAAAGATGTTAGATGAGCAATTTTTTAAGAAGTTGCATATTAATATTCCAGTCTTAGAAGCTTTAGAACAAATGCCTAATTATGTGAAATTCATGAAAGATATTCTATCAAAGAATAATAAGTTTAAGAAATATGAAATGATTGATATGACTGAAGAGTATGATGTTGTGCTGCAGAAAAAGTTGCCACAAAGGCTCAAAGATCCAGGGA

Protein sequence

EVVKEEQPKEKVSELESSSGKSSKHIPFVPNSPYPQRFQKKMLDEQFFKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG

Homology

[Close]

BLAST of BhiUN384G47 vs. TrEMBL
Match: tr|A0A2P5F9V5|A0A2P5F9V5_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096020 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 60/114 (52.63%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 6   EQPKEKVSELESSSGKS----SKHIPFVPNSPYPQRFQKKMLDEQF------FKKLHINI 65
           EQ +E +   E    KS        P+VP  PYPQRFQK+ LD+ F      FKKLHINI
Sbjct: 30  EQTQEMMPASEIKKPKSKLFPDNPPPYVPLIPYPQRFQKQKLDKHFSKFLDVFKKLHINI 89

Query: 66  PVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG 110
           P  +ALEQM +YVKFMK+ILS   K ++YE + +TEE   +LQKKLP +LKDPG
Sbjct: 90  PFADALEQMSSYVKFMKEILSNKRKLEEYETVVLTEECSAILQKKLPPKLKDPG 143

[Close]

BLAST of BhiUN384G47 vs. TrEMBL
Match: tr|A0A2G9HYA0|A0A2G9HYA0_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   EVVKEEQPKEKVSELESSSGKSSKHIPFVPNSPYPQRFQKKMLDEQF------FKKLHIN 60
           EV+ EE+ KE  + LE S        P     P+PQR QK+ L++QF      FKKLHIN
Sbjct: 287 EVISEEKEKEVEAPLEVSK-------PTTLQPPFPQRLQKQKLEKQFLKFLEVFKKLHIN 346

Query: 61  IPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG 110
           IP  EALEQMP+YVKFMKDILSK  +   YE + +TEE   ++Q KLP +LKDPG
Sbjct: 347 IPFAEALEQMPSYVKFMKDILSKKRRLGDYETVALTEECSAIIQNKLPPKLKDPG 394

[Close]

BLAST of BhiUN384G47 vs. TrEMBL
Match: tr|A0A2G9GK35|A0A2G9GK35_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21798 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   EVVKEEQPKEKVSELESSSGKSSKHIPFVPNSPYPQRFQKKMLDEQF------FKKLHIN 60
           EV+ EE+ KE  + LE S        P     P+PQR QK+ L++QF      FKKLHIN
Sbjct: 287 EVISEEKEKEVEAPLEVSK-------PTTLQPPFPQRLQKQKLEKQFLKFLEVFKKLHIN 346

Query: 61  IPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG 110
           IP  EALEQMP+YVKFMKDILSK  +   YE + +TEE   ++Q KLP +LKDPG
Sbjct: 347 IPFAEALEQMPSYVKFMKDILSKKRRLGDYETVALTEECSAIIQNKLPPKLKDPG 394

[Close]

BLAST of BhiUN384G47 vs. TrEMBL
Match: tr|A0A2G9HSD1|A0A2G9HSD1_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06869 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-19
Identity = 60/115 (52.17%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   EVVKEEQPKEKVSELESSSGKSSKHIPFVPNSPYPQRFQKKMLDEQF------FKKLHIN 60
           EV+ EE+ KE  + LE S        P     P+PQR QK+ L++QF      FKKLHIN
Sbjct: 402 EVISEEKEKEIEAPLEVSK-------PTTLQPPFPQRLQKQKLEKQFLKFLEVFKKLHIN 461

Query: 61  IPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG 110
           IP  EALEQMP+YVKFMKDILSK  +   YE + +TEE   ++Q KLP +LKDPG
Sbjct: 462 IPFAEALEQMPSYVKFMKDILSKKRRLGDYETVVLTEECSAIIQNKLPPKLKDPG 509

[Close]

BLAST of BhiUN384G47 vs. TrEMBL
Match: tr|A0A2G9FYI0|A0A2G9FYI0_9LAMI (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29405 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 1   EVVKEEQPKEKVSELESSSGKSSKHIPFVPNSPYPQRFQKKMLDEQF------FKKLHIN 60
           EV+ +E  KE  + LE S        P     P+PQR QK+ L++QF      FKKLHIN
Sbjct: 107 EVISKENEKEVEAPLEVSK-------PTTLQPPFPQRLQKQKLEKQFQKFLKIFKKLHIN 166

Query: 61  IPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQRLKDPG 110
           IP  EAL+QMP+YVKFMKDILSK  +   YE + +TEEY  ++Q KLP +LKDPG
Sbjct: 167 IPFAEALKQMPSYVKFMKDILSKKIRLGDYETVALTEEYSAIIQNKLPPKLKDPG 214

[Close]

BLAST of BhiUN384G47 vs. NCBI nr
Match: XP_024024249.1 (uncharacterized protein LOC112092388 [Morus notabilis])

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 30  PNSPYPQRFQKKMLDEQF------FKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKK 89
           P  PYPQRF+KK +D QF      FKK+HINIP  +ALEQMPNY+KFMKD+++K  + + 
Sbjct: 83  PTLPYPQRFKKKNMDAQFSKFLEIFKKIHINIPFADALEQMPNYIKFMKDVMAKKRRLED 142

Query: 90  YEMIDMTEEYDVVLQKKLPQRLKDPG 110
           YE + +TEE   +LQ+KLPQ+LKDPG
Sbjct: 143 YETVKLTEECSAILQRKLPQKLKDPG 168

[Close]

BLAST of BhiUN384G47 vs. NCBI nr
Match: XP_024029937.1 (uncharacterized protein LOC112094091 [Morus notabilis])

HSP 1 Score: 106.7 bits (265), Expect = 5.1e-20
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   EVVKEEQPKEKVSELESSSGKSS---KHIPFV-------PNSPYPQRFQKKMLDEQF--- 60
           E  K ++ K K  E+ +   K S   K I F+       P  PYPQRF+KK LD QF   
Sbjct: 321 EAPKPQEDKTKEEEVGTEQPKESARPKSISFLDNPPLIAPTLPYPQRFKKKKLDAQFSKF 380

Query: 61  ---FKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKKYEMIDMTEEYDVVLQKKLPQR 110
              FKK+HINIP ++ALEQMPNYVKFM D+++K  + + +E + +TEE   +LQ+KLPQ+
Sbjct: 381 LEIFKKIHINIPFVDALEQMPNYVKFMNDVMAKKRRLEDFETVKLTEECSAILQRKLPQK 440

[Close]

BLAST of BhiUN384G47 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 33  PYPQRFQKKMLDEQF------FKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKKYEM 92
           PYPQRFQK+ LD+QF      FKK+HINIP  +ALEQMPNY KF+KDI+SK  + +++E 
Sbjct: 476 PYPQRFQKQKLDKQFSKFLDIFKKIHINIPFADALEQMPNYAKFLKDIISKKRRLEEFET 535

Query: 93  IDMTEEYDVVLQKKLPQRLKDPG 110
           + ++EE   ++QKKLPQ+LKDPG
Sbjct: 536 VKLSEECSAIIQKKLPQKLKDPG 558

[Close]

BLAST of BhiUN384G47 vs. NCBI nr
Match: XP_024022388.1 (uncharacterized protein LOC112091888 [Morus notabilis])

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 30  PNSPYPQRFQKKMLDEQF------FKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKK 89
           P  P+PQRFQKK LDEQF      FKK+HINIP ++ALEQMPNY KFMK+++SK  K + 
Sbjct: 237 PPLPFPQRFQKKALDEQFENFLNTFKKIHINIPFMDALEQMPNYAKFMKEVMSKKRKLED 296

Query: 90  YEMIDMTEEYDVVLQKKLPQRLKDPG 110
           YE + +TEE   +++++LP++LKDPG
Sbjct: 297 YETMKLTEECSAIIKRQLPEKLKDPG 322

[Close]

BLAST of BhiUN384G47 vs. NCBI nr
Match: XP_024021985.1 (uncharacterized protein LOC112091773 [Morus notabilis])

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 30  PNSPYPQRFQKKMLDEQF------FKKLHINIPVLEALEQMPNYVKFMKDILSKNNKFKK 89
           P  P+PQRFQKK LDEQF      FK++HINIP ++ALEQMPNY KFMK+++SK  K + 
Sbjct: 206 PPLPFPQRFQKKALDEQFEKFLNIFKRIHINIPFVDALEQMPNYAKFMKEVMSKKRKLED 265

Query: 90  YEMIDMTEEYDVVLQKKLPQRLKDPG 110
           YE + +TEE   +++++LP++LKDPG
Sbjct: 266 YETVKLTEECSAIIKRQLPEKLKDPG 291

The following BLAST results are available for this feature:

BLAST of BhiUN384G47 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of BhiUN384G47 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN384G47 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5F9V5\|A0A2P5F9V5_9ROSA	1.3e-19	52.63	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_096020 PE=4 S...	[more]
tr\|A0A2G9HYA0\|A0A2G9HYA0_9LAMI	1.3e-19	52.17	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_048...	[more]
tr\|A0A2G9GK35\|A0A2G9GK35_9LAMI	1.3e-19	52.17	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_217...	[more]
tr\|A0A2G9HSD1\|A0A2G9HSD1_9LAMI	2.2e-19	52.17	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_068...	[more]
tr\|A0A2G9FYI0\|A0A2G9FYI0_9LAMI	2.9e-19	51.30	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_294...	[more]

BLAST of BhiUN384G47 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024024249.1	1.8e-20	58.14	uncharacterized protein LOC112092388 [Morus notabilis]	[more]
XP_024029937.1	5.1e-20	48.00	uncharacterized protein LOC112094091 [Morus notabilis]	[more]
XP_023874613.1	8.7e-20	59.04	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_024022388.1	8.7e-20	56.98	uncharacterized protein LOC112091888 [Morus notabilis]	[more]
XP_024021985.1	1.5e-19	55.81	uncharacterized protein LOC112091773 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN384M47	BhiUN384M47	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 31..109

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
BhiUN384G47	Cucumber (Gy14) v2	cgybwgoB462
BhiUN384G47	Wild cucumber (PI 183967)	cpiwgoB489
BhiUN384G47	Cucumber (Chinese Long) v3	cucwgoB498
BhiUN384G47	Cucumber (Chinese Long) v2	cuwgoB486
BhiUN384G47	Bottle gourd (USVL1VR-Ls)	lsiwgoB052
BhiUN384G47	Watermelon (Charleston Gray)	wcgwgoB215