BhiUN297G28 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN297G28
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Zinc finger protein, putative isoform 2
Location	Contig297 : 497854 .. 498087 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAATGCAATTTGTAGAAGGTGGAGGATTAGGGAAAGATGGTCAAAGAATGGCTCGGTCAAAACCACTTGGGTTAGGCATCGAGTTCTCCAAGGCCTCGACTTCTATTGCTGATGATAACCAGGCAAGTCGGGTATCCGCCGCTAGAACTGAGTCGAGAGTTTTGGGAAAATTCAAAAAAAAAATGGTGCTTTTGAAGAGCATACTAAAGGACTTGGGTCGAAAATGA

mRNA sequence

ATGGCAAAAATGCAATTTGTAGAAGGTGGAGGATTAGGGAAAGATGGTCAAAGAATGGCTCGGTCAAAACCACTTGGGTTAGGCATCGAGTTCTCCAAGGCCTCGACTTCTATTGCTGATGATAACCAGGCAAGTCGGGTATCCGCCGCTAGAACTGAGTCGAGAGTTTTGGGAAAATTCAAAAAAAAAATGGTGCTTTTGAAGAGCATACTAAAGGACTTGGGTCGAAAATGA

Coding sequence (CDS)

ATGGCAAAAATGCAATTTGTAGAAGGTGGAGGATTAGGGAAAGATGGTCAAAGAATGGCTCGGTCAAAACCACTTGGGTTAGGCATCGAGTTCTCCAAGGCCTCGACTTCTATTGCTGATGATAACCAGGCAAGTCGGGTATCCGCCGCTAGAACTGAGTCGAGAGTTTTGGGAAAATTCAAAAAAAAAATGGTGCTTTTGAAGAGCATACTAAAGGACTTGGGTCGAAAATGA

Protein sequence

MAKMQFVEGGGLGKDGQRMARSKPLGLGIEFSKASTSIADDNQASRVSAARTESRVLGKFKKKMVLLKSILKDLGRK

Homology

[Close]

BLAST of BhiUN297G28 vs. TrEMBL
Match: tr|A0A0A0LTU7|A0A0A0LTU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G266150 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS +S+ART 
Sbjct: 662 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASGISSARTG 721

Query: 61  SRVLGKFKK 63
           S  L K KK
Sbjct: 722 SSALEKTKK 730

[Close]

BLAST of BhiUN297G28 vs. TrEMBL
Match: tr|A0A1S3B9V9|A0A1S3B9V9_CUCME (uncharacterized protein LOC103487380 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487380 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS VS+ART 
Sbjct: 674 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASWVSSARTR 733

Query: 61  SRVLGKFKK 63
           S  L K K+
Sbjct: 734 SGALEKSKR 742

[Close]

BLAST of BhiUN297G28 vs. TrEMBL
Match: tr|A0A1S3B932|A0A1S3B932_CUCME (uncharacterized protein LOC103487380 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487380 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS VS+ART 
Sbjct: 679 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASWVSSARTR 738

Query: 61  SRVLGKFKK 63
           S  L K K+
Sbjct: 739 SGALEKSKR 747

[Close]

BLAST of BhiUN297G28 vs. TrEMBL
Match: tr|B9IMJ5|B9IMJ5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G113600v3 PE=4 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKAST-SIADDNQASRVSAART 60
           MAKM F+EGGGLGKDGQ MA       R K LGLG++FS  S  S+ +  Q+SR   +  
Sbjct: 619 MAKMGFIEGGGLGKDGQGMAQPVEVTQRPKSLGLGVDFSDISVDSVKNKPQSSRTGTSGK 678

Query: 61  ESRV--LGKFKK 63
           +S+   LG F+K
Sbjct: 679 QSKTENLGAFEK 690

[Close]

BLAST of BhiUN297G28 vs. TrEMBL
Match: tr|A0A2K1WZG7|A0A2K1WZG7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G113600v3 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKAST-SIADDNQASRVSAART 60
           MAKM F+EGGGLGKDGQ MA       R K LGLG++FS  S  S+ +  Q+SR   +  
Sbjct: 502 MAKMGFIEGGGLGKDGQGMAQPVEVTQRPKSLGLGVDFSDISVDSVKNKPQSSRTGTSGK 561

Query: 61  ESRV--LGKFKK 63
           +S+   LG F+K
Sbjct: 562 QSKTENLGAFEK 573

[Close]

BLAST of BhiUN297G28 vs. NCBI nr
Match: XP_004146703.1 (PREDICTED: uncharacterized protein LOC101215133 isoform X2 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS +S+ART 
Sbjct: 672 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASGISSARTG 731

Query: 61  SRVLGKFKK 63
           S  L K KK
Sbjct: 732 SSALEKTKK 740

[Close]

BLAST of BhiUN297G28 vs. NCBI nr
Match: KGN65218.1 (hypothetical protein Csa_1G266150 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS +S+ART 
Sbjct: 662 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASGISSARTG 721

Query: 61  SRVLGKFKK 63
           S  L K KK
Sbjct: 722 SSALEKTKK 730

[Close]

BLAST of BhiUN297G28 vs. NCBI nr
Match: XP_011655819.1 (PREDICTED: uncharacterized protein LOC101215133 isoform X1 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS +S+ART 
Sbjct: 682 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASGISSARTG 741

Query: 61  SRVLGKFKK 63
           S  L K KK
Sbjct: 742 SSALEKTKK 750

[Close]

BLAST of BhiUN297G28 vs. NCBI nr
Match: XP_011655824.1 (PREDICTED: uncharacterized protein LOC101215133 isoform X3 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS +S+ART 
Sbjct: 528 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASGISSARTG 587

Query: 61  SRVLGKFKK 63
           S  L K KK
Sbjct: 588 SSALEKTKK 596

[Close]

BLAST of BhiUN297G28 vs. NCBI nr
Match: XP_008443896.1 (PREDICTED: uncharacterized protein LOC103487380 isoform X1 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 8.9e-11
Identity = 46/69 (66.67%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAKMQFVEGGGLGKDGQRMA-------RSKPLGLGIEFSKASTSIADDNQASRVSAARTE 60
           MAKM FVEGGGLGKDGQ M        R K LGLGIEFS+ASTS A DNQAS VS+ART 
Sbjct: 679 MAKMGFVEGGGLGKDGQGMTHPIEVMKRPKSLGLGIEFSEASTSAAGDNQASWVSSARTR 738

Query: 61  SRVLGKFKK 63
           S  L K K+
Sbjct: 739 SGALEKSKR 747

The following BLAST results are available for this feature:

BLAST of BhiUN297G28 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of BhiUN297G28 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN297G28 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTU7\|A0A0A0LTU7_CUCSA	3.5e-11	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G266150 PE=4 SV=1	[more]
tr\|A0A1S3B9V9\|A0A1S3B9V9_CUCME	5.9e-11	66.67	uncharacterized protein LOC103487380 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B932\|A0A1S3B932_CUCME	5.9e-11	66.67	uncharacterized protein LOC103487380 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|B9IMJ5\|B9IMJ5_POPTR	2.4e-04	48.61	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G113600v3 PE=...	[more]
tr\|A0A2K1WZG7\|A0A2K1WZG7_POPTR	2.4e-04	48.61	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G113600v3 PE=...	[more]

BLAST of BhiUN297G28 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146703.1	5.2e-11	66.67	PREDICTED: uncharacterized protein LOC101215133 isoform X2 [Cucumis sativus]	[more]
KGN65218.1	5.2e-11	66.67	hypothetical protein Csa_1G266150 [Cucumis sativus]	[more]
XP_011655819.1	5.2e-11	66.67	PREDICTED: uncharacterized protein LOC101215133 isoform X1 [Cucumis sativus]	[more]
XP_011655824.1	5.2e-11	66.67	PREDICTED: uncharacterized protein LOC101215133 isoform X3 [Cucumis sativus]	[more]
XP_008443896.1	8.9e-11	66.67	PREDICTED: uncharacterized protein LOC103487380 isoform X1 [Cucumis melo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN297M28	BhiUN297M28	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN297G28	Cla018700	Watermelon (97103) v1	wgowmB160

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None