BhiUN159G49 (gene) Wax gourd

Overview
NameBhiUN159G49
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionMethyltransferase
LocationContig159 : 1410187 .. 1410532 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATGGACAGAGAGCGGTGCCAATACACGTTTTAACTGTGGGGAAGAAGAGGTCTTGTGGCGTTCAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAAAACTACTGTCATGTTGAAGATGTTCAACTACGCTCAAATCCTAGGAATGTGCGGTATATGATTGTGTGGTTAATGTTAGTTTGTAAATTTTGTTTAATTACGTTCATATCTCTGATGAATAGTGCTAGTCTTAATTAAATACTTTCATTCTGCGTATTGGTACTTGAATTTTAGGGATCCGAGAACTCAGGTTAATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTAATGATTGG

mRNA sequence

ATGGACAATGGACAGAGAGCGGTGCCAATACACGTTTTAACTGTGGGGAAGAAGAGGTCTTGTGGCGTTCAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAAAACTACTGTCATGTTGAAGATGTTCAACTACGCTCAAATCCTAGGAATGTGCGGGATCCGAGAACTCAGGTTAATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTAATGATTGG

Coding sequence (CDS)

ATGGACAATGGACAGAGAGCGGTGCCAATACACGTTTTAACTGTGGGGAAGAAGAGGTCTTGTGGCGTTCAGCTTCTCGTTGATGAGTATATTGAAAAGCTCAAAAACTACTGTCATGTTGAAGATGTTCAACTACGCTCAAATCCTAGGAATGTGCGGGATCCGAGAACTCAGGTTAATGATGAAGACATGGCTGTCGTGAATCTTCTCAAGTCTAATGATTGG

Protein sequence

MDNGQRAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMAVVNLLKSNDW
Homology
[Close]
BLAST of BhiUN159G49 vs. TAIR10
Match: AT5G10620.1 (methyltransferases)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-19
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 6   RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
           RA+PI V+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRN +D R QV DE++A
Sbjct: 37  RALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVA 96

Query: 66  VVNLLKSNDW 76
           ++ L+ S+DW
Sbjct: 97  MMKLIGSDDW 106

[Close]
BLAST of BhiUN159G49 vs. Swiss-Prot
Match: sp|Q9LXB4|Y5620_ARATH (Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g10620 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-18
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 6   RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
           RA+PI V+TVGKKRS GV+LLVDEY  KLK YC  ED  +RSNPRN +D R QV DE++A
Sbjct: 37  RALPIRVITVGKKRSEGVRLLVDEYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVA 96

Query: 66  VVNLLKSNDW 76
           ++ L+ S+DW
Sbjct: 97  MMKLIGSDDW 106

[Close]
BLAST of BhiUN159G49 vs. TrEMBL
Match: tr|A0A1S3CQZ8|A0A1S3CQZ8_CUCME (putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQLLVDEYI+KLKNYCHVEDVQLRSNPRN RDP+ Q++DED+A
Sbjct: 26 RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQIDDEDVA 85

Query: 66 VVNLLKSNDW 76
          VVNLLKS+DW
Sbjct: 86 VVNLLKSDDW 95

[Close]
BLAST of BhiUN159G49 vs. TrEMBL
Match: tr|A0A0A0LGS0|A0A0A0LGS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-26
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQLLVDEYI+KLKNYCHVEDVQLRSNPRN RDP+ QV+DED+A
Sbjct: 26 RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVA 85

Query: 66 VVNLLKSNDW 76
          VVNLLK +DW
Sbjct: 86 VVNLLKPDDW 95

[Close]
BLAST of BhiUN159G49 vs. TrEMBL
Match: tr|A0A1R3GVA9|A0A1R3GVA9_COCAP (Putative SPOUT methyltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23110 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-24
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 6   RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
           RA+PI +LTVGK RS GVQLLVDEYI KLKNYCHV+DVQ+RSNP+N RDPR QV+DED A
Sbjct: 326 RALPIRILTVGKTRSPGVQLLVDEYIAKLKNYCHVDDVQIRSNPKNARDPRAQVDDEDTA 385

Query: 66  VVNLLKSNDW 76
           +VNL+KS+DW
Sbjct: 386 IVNLIKSDDW 395

[Close]
BLAST of BhiUN159G49 vs. TrEMBL
Match: tr|A0A1U8J021|A0A1U8J021_GOSHI (putative RNA methyltransferase At5g10620 isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107902008 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 4  GQRAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDED 63
          GQRA+PI  LTVGKKR  GVQLLVDEYI KLK+YCHV+DVQ+RSNP+N R+   QV+DED
Sbjct: 17 GQRALPIRTLTVGKKRLPGVQLLVDEYIAKLKSYCHVDDVQIRSNPKNARNVMAQVHDED 76

Query: 64 MAVVNLLKSNDW 76
          +AV+NL+ SNDW
Sbjct: 77 IAVINLITSNDW 88

[Close]
BLAST of BhiUN159G49 vs. TrEMBL
Match: tr|A0A072VNR3|A0A072VNR3_MEDTR (SPOUT methyltransferase, putative OS=Medicago truncatula OX=3880 GN=25481888 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-22
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 6   RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
           RA+PI +L+VGKKRS G+QL+VDEYIEK+K YC VEDVQ+RSNPRN RD R QV+DEDMA
Sbjct: 62  RALPIRILSVGKKRSPGLQLMVDEYIEKIKYYCSVEDVQIRSNPRNARDHRAQVDDEDMA 121

Query: 66  VVNLLKSNDW 76
           V+NL++S+DW
Sbjct: 122 VMNLIRSDDW 131

[Close]
BLAST of BhiUN159G49 vs. NCBI nr
Match: XP_008466330.1 (PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331.1 PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQLLVDEYI+KLKNYCHVEDVQLRSNPRN RDP+ Q++DED+A
Sbjct: 26 RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQIDDEDVA 85

Query: 66 VVNLLKSNDW 76
          VVNLLKS+DW
Sbjct: 86 VVNLLKSDDW 95

[Close]
BLAST of BhiUN159G49 vs. NCBI nr
Match: XP_004136319.1 (PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus] >XP_011652512.1 PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQLLVDEYI+KLKNYCHVEDVQLRSNPRN RDP+ QV+DED+A
Sbjct: 26 RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVA 85

Query: 66 VVNLLKSNDW 76
          VVNLLK +DW
Sbjct: 86 VVNLLKPDDW 95

[Close]
BLAST of BhiUN159G49 vs. NCBI nr
Match: XP_011652513.1 (PREDICTED: putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus] >KGN60154.1 hypothetical protein Csa_3G881670 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQLLVDEYI+KLKNYCHVEDVQLRSNPRN RDP+ QV+DED+A
Sbjct: 26 RAVPIRVLTVGKKRSRGVQLLVDEYIDKLKNYCHVEDVQLRSNPRNARDPKAQVDDEDVA 85

Query: 66 VVNLLKSNDW 76
          VVNLLK +DW
Sbjct: 86 VVNLLKPDDW 95

[Close]
BLAST of BhiUN159G49 vs. NCBI nr
Match: XP_022131417.1 (putative RNA methyltransferase At5g10620 isoform X4 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 6   RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
           RAVPI VLTVGKKRS GVQL+VDEYIEKLK+YC+VEDVQLRSNPRN RDPR QV+DEDMA
Sbjct: 32  RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMA 91

Query: 66  VVNLLKSNDW 76
           VVNLLKS+DW
Sbjct: 92  VVNLLKSDDW 101

[Close]
BLAST of BhiUN159G49 vs. NCBI nr
Match: XP_022131264.1 (putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 6  RAVPIHVLTVGKKRSCGVQLLVDEYIEKLKNYCHVEDVQLRSNPRNVRDPRTQVNDEDMA 65
          RAVPI VLTVGKKRS GVQL+VDEYIEKLK+YC+VEDVQLRSNPRN RDPR QV+DEDMA
Sbjct: 30 RAVPIRVLTVGKKRSRGVQLVVDEYIEKLKHYCNVEDVQLRSNPRNARDPRAQVDDEDMA 89

Query: 66 VVNLLKSNDW 76
          VVNLLKS+DW
Sbjct: 90 VVNLLKSDDW 99

The following BLAST results are available for this feature:
BLAST of BhiUN159G49 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10620.13.6e-1962.86methyltransferases[more]
BLAST of BhiUN159G49 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LXB4|Y5620_ARATH6.5e-1862.86Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana OX=3702 GN=At5g... [more]
BLAST of BhiUN159G49 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CQZ8|A0A1S3CQZ8_CUCME1.3e-2685.71putative RNA methyltransferase At5g10620 OS=Cucumis melo OX=3656 GN=LOC103503770... [more]
tr|A0A0A0LGS0|A0A0A0LGS0_CUCSA3.7e-2685.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881670 PE=3 SV=1[more]
tr|A0A1R3GVA9|A0A1R3GVA9_COCAP4.5e-2477.14Putative SPOUT methyltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23... [more]
tr|A0A1U8J021|A0A1U8J021_GOSHI3.2e-2272.22putative RNA methyltransferase At5g10620 isoform X2 OS=Gossypium hirsutum OX=363... [more]
tr|A0A072VNR3|A0A072VNR3_MEDTR5.5e-2272.86SPOUT methyltransferase, putative OS=Medicago truncatula OX=3880 GN=25481888 PE=... [more]
BLAST of BhiUN159G49 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466330.11.9e-2685.71PREDICTED: putative RNA methyltransferase At5g10620 [Cucumis melo] >XP_008466331... [more]
XP_004136319.15.6e-2685.71PREDICTED: putative RNA methyltransferase At5g10620 isoform X1 [Cucumis sativus]... [more]
XP_011652513.15.6e-2685.71PREDICTED: putative RNA methyltransferase At5g10620 isoform X2 [Cucumis sativus]... [more]
XP_022131417.15.6e-2687.14putative RNA methyltransferase At5g10620 isoform X4 [Momordica charantia][more]
XP_022131264.15.6e-2687.14putative RNA methyltransferase At5g10620 isoform X2 [Momordica charantia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR029026tRNA_m1G_MTases_N
IPR003742RlmH-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008168 methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
BhiUN159M49BhiUN159M49mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003742RNA methyltransferase RlmHPFAMPF02590SPOUT_MTasecoord: 10..74
e-value: 3.4E-6
score: 27.0
IPR003742RNA methyltransferase RlmHPANTHERPTHR33603FAMILY NOT NAMEDcoord: 9..75
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3DG3DSA:3.40.1280.10coord: 5..75
e-value: 3.5E-7
score: 32.0
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILYSSF75217alpha/beta knotcoord: 9..74

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
BhiUN159G49Cucumber (Gy14) v1cgywgoB390
BhiUN159G49Cucumber (Gy14) v2cgybwgoB468
BhiUN159G49Wild cucumber (PI 183967)cpiwgoB495
BhiUN159G49Cucumber (Chinese Long) v3cucwgoB504
BhiUN159G49Cucumber (Chinese Long) v2cuwgoB492
BhiUN159G49Bottle gourd (USVL1VR-Ls)lsiwgoB125
BhiUN159G49Melon (DHL92) v3.6.1medwgoB063
BhiUN159G49Melon (DHL92) v3.5.1mewgoB064
BhiUN159G49Melon (DHL92) v3.5.1mewgoB065
BhiUN159G49Watermelon (Charleston Gray)wcgwgoB166