Bhi12G001963 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001963
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Retrotransposon gag protein
Location	chr12 : 69816847 .. 69817464 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGAGATAGATGATCTATCCGACAAAGAAGCACTCTTTCACTTTAAAGATGGTCTTAGGGAATGGGCGAGAATTGAACTTGATAGGTGCAATGTGAAGACGCTTGATAATGCCATTGCCACCGCAAAGATGCTCATAAATTTCTCAGCCAAGGGGAAGAAGATCAAGAAAGATGAAGGAGAGACGCCGGAGTCCGATGGAGATAATGAGGATGAGGCAAAAGGCAATGCCAAGAATGGTGGAAAAGGGAAGGCTATTGATGCAGGCGAAGGTAAGCTCTTAAAGCTTAAGAAACCTAAGCCTTGTTTCCTCCGCAAAGGGACACATTGGACTAGGGATTACCCAGTTAGGAAGAAGCTAAATGCCCTAGTCACCGAGTCCCATCAGAAAAAAGTAAAAATGGGCTTCATATACCGGATGGGTGCCCTAATCAAGGAGGTCTCTTCAGGGAATGAAGAGAAAGAAACCAAAGATGCCAAAACAAAGCCCAAAAGTAAAATGGGTAAATGGCCGAGGTTAGCCTCCCTTAAGGATAATGAGGGAGACATGAAGGAGTTTGAGGCATCAAAGATGGAATCAACGAAGCAACCAAGAGAAGGATGCACAAGAAAATGA

mRNA sequence

ATGCTCGAGATAGATGATCTATCCGACAAAGAAGCACTCTTTCACTTTAAAGATGGTCTTAGGGAATGGGCGAGAATTGAACTTGATAGGTGCAATGTGAAGACGCTTGATAATGCCATTGCCACCGCAAAGATGCTCATAAATTTCTCAGCCAAGGGGAAGAAGATCAAGAAAGATGAAGGAGAGACGCCGGAGTCCGATGGAGATAATGAGGATGAGGCAAAAGGCAATGCCAAGAATGGTGGAAAAGGGAAGGCTATTGATGCAGGCGAAGGTAAGCTCTTAAAGCTTAAGAAACCTAAGCCTTGTTTCCTCCGCAAAGGGACACATTGGACTAGGGATTACCCAGTTAGGAAGAAGCTAAATGCCCTAGTCACCGAGTCCCATCAGAAAAAAGTAAAAATGGGCTTCATATACCGGATGGGTGCCCTAATCAAGGAGGTCTCTTCAGGGAATGAAGAGAAAGAAACCAAAGATGCCAAAACAAAGCCCAAAAGTAAAATGGGTAAATGGCCGAGGTTAGCCTCCCTTAAGGATAATGAGGGAGACATGAAGGAGTTTGAGGCATCAAAGATGGAATCAACGAAGCAACCAAGAGAAGGATGCACAAGAAAATGA

Coding sequence (CDS)

ATGCTCGAGATAGATGATCTATCCGACAAAGAAGCACTCTTTCACTTTAAAGATGGTCTTAGGGAATGGGCGAGAATTGAACTTGATAGGTGCAATGTGAAGACGCTTGATAATGCCATTGCCACCGCAAAGATGCTCATAAATTTCTCAGCCAAGGGGAAGAAGATCAAGAAAGATGAAGGAGAGACGCCGGAGTCCGATGGAGATAATGAGGATGAGGCAAAAGGCAATGCCAAGAATGGTGGAAAAGGGAAGGCTATTGATGCAGGCGAAGGTAAGCTCTTAAAGCTTAAGAAACCTAAGCCTTGTTTCCTCCGCAAAGGGACACATTGGACTAGGGATTACCCAGTTAGGAAGAAGCTAAATGCCCTAGTCACCGAGTCCCATCAGAAAAAAGTAAAAATGGGCTTCATATACCGGATGGGTGCCCTAATCAAGGAGGTCTCTTCAGGGAATGAAGAGAAAGAAACCAAAGATGCCAAAACAAAGCCCAAAAGTAAAATGGGTAAATGGCCGAGGTTAGCCTCCCTTAAGGATAATGAGGGAGACATGAAGGAGTTTGAGGCATCAAAGATGGAATCAACGAAGCAACCAAGAGAAGGATGCACAAGAAAATGA

Protein sequence

MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDEGETPESDGDNEDEAKGNAKNGGKGKAIDAGEGKLLKLKKPKPCFLRKGTHWTRDYPVRKKLNALVTESHQKKVKMGFIYRMGALIKEVSSGNEEKETKDAKTKPKSKMGKWPRLASLKDNEGDMKEFEASKMESTKQPREGCTRK

Homology

[Close]

BLAST of Bhi12G001963 vs. TrEMBL
Match: tr|A0A2U1NEZ9|A0A2U1NEZ9_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA274570 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEIDD++D++ALF+FKDGL+EWAR+E+DR NVKTLD AIA A+ ++++S + ++   ++
Sbjct: 198 LLEIDDVADQDALFYFKDGLKEWARVEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLTNK 257

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G HWTR+ P RK 
Sbjct: 258 ---------TGVERAPVKRLDGGPKFERSFQKKDTSKPPPKPCFICDGPHWTRECPSRKA 317

Query: 121 LNALVTESHQK-----KVKMGFIYRMGALIKEVSSGNEEKE 157
           +NALV E   K     + ++G I R+  L KE+ +G E KE
Sbjct: 318 INALVAEMGPKIDEPSQGELGSIRRLSTL-KEMLTGAESKE 348

[Close]

BLAST of Bhi12G001963 vs. TrEMBL
Match: tr|A0A2U1PL38|A0A2U1PL38_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA095360 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEIDD++D++ALF+FKDGL+EWAR+E+DR NVKTLD AIA A+ ++++S + ++   ++
Sbjct: 284 LLEIDDVADQDALFYFKDGLKEWARVEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLTNK 343

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G HWTR+ P RK 
Sbjct: 344 ---------TGVERAPVKRLDGGPKFERSFQKKDTSKPPPKPCFICDGPHWTRECPSRKA 403

Query: 121 LNALVTESHQK-----KVKMGFIYRMGALIKEVSSGNEEKE 157
           +NALV E   K     + ++G I R+  L KE+ +G E KE
Sbjct: 404 INALVAEMGPKIDEPSQGELGSIRRLSTL-KEMLTGAENKE 434

[Close]

BLAST of Bhi12G001963 vs. TrEMBL
Match: tr|A0A1S3C1B3|A0A1S3C1B3_CUCME (uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 61/159 (38.36%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSA--KGKKIKK 60
           MLEI DL +KEALF FKDGL++WA+IELDR NV+TLD+AIA  + L+++SA  KGKK   
Sbjct: 186 MLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQTLDDAIAAVETLVDYSAQSKGKKPGP 245

Query: 61  DE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPV 120
           ++                                          PCF+ KG HWTRD P 
Sbjct: 246 EKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGECSNPPKPCFICKGPHWTRDCPN 305

Query: 121 RKKLNALVTESHQKK-------VKMGFIYRMGALIKEVS 150
           RK LNALV +  + K        ++G + ++G + KE +
Sbjct: 306 RKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVMKKETT 344

[Close]

BLAST of Bhi12G001963 vs. TrEMBL
Match: tr|A0A2U1NWJ0|A0A2U1NWJ0_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219830 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEI D+ D++ALF+FKDGL+EWARIE+DR NVKTLD AIA A+ ++++S + ++   D+
Sbjct: 243 LLEIVDVPDQDALFYFKDGLKEWARIEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLIDQ 302

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G+HWTRD P RK 
Sbjct: 303 -----EGVKRASPKRLDDRRDEGPKFEKSFQNKDMSKPPPKPCFICDGSHWTRDCPSRKA 362

Query: 121 LNALVTESHQKKVKMGFIYRMGALIKEVSSGNEEKETKDAKTKPKSKMGKWPRL--ASLK 180
           +NALV E      ++G I R+G  IKE+ +  + K+     T+ K    K   L      
Sbjct: 363 INALVAEMGSITEELGSIRRLGT-IKEILARAKTKDQGLLFTELKVNDMKTLGLIDTGAT 422

Query: 181 DNEGDMKEFEASKMESTKQ 198
           DN  D+KE E   ++ T +
Sbjct: 423 DNFLDVKEAECLGIKYTPE 435

[Close]

BLAST of Bhi12G001963 vs. TrEMBL
Match: tr|A0A1S3BG92|A0A1S3BG92_CUCME (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 57/135 (42.22%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSA--KGKKIKK 60
           MLEI DL +KEALF FKDGL++WA+IELDR NV+TLD+AIA A+ L+++S   KGKK   
Sbjct: 275 MLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQTLDDAIAAAETLVDYSTQLKGKKPGP 334

Query: 61  DE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPV 120
           ++                                          P F+ KG HWTRD P 
Sbjct: 335 EKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGESSNPPKPYFICKGPHWTRDCPN 394

Query: 121 RKKLNALVTESHQKK 133
           RK LNALVT+  + K
Sbjct: 395 RKALNALVTKFQEIK 409

[Close]

BLAST of Bhi12G001963 vs. NCBI nr
Match: PWA72092.1 (hypothetical protein CTI12_AA274570 [Artemisia annua])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEIDD++D++ALF+FKDGL+EWAR+E+DR NVKTLD AIA A+ ++++S + ++   ++
Sbjct: 198 LLEIDDVADQDALFYFKDGLKEWARVEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLTNK 257

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G HWTR+ P RK 
Sbjct: 258 ---------TGVERAPVKRLDGGPKFERSFQKKDTSKPPPKPCFICDGPHWTRECPSRKA 317

Query: 121 LNALVTESHQK-----KVKMGFIYRMGALIKEVSSGNEEKE 157
           +NALV E   K     + ++G I R+  L KE+ +G E KE
Sbjct: 318 INALVAEMGPKIDEPSQGELGSIRRLSTL-KEMLTGAESKE 348

[Close]

BLAST of Bhi12G001963 vs. NCBI nr
Match: PWA86449.1 (hypothetical protein CTI12_AA095360 [Artemisia annua])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEIDD++D++ALF+FKDGL+EWAR+E+DR NVKTLD AIA A+ ++++S + ++   ++
Sbjct: 284 LLEIDDVADQDALFYFKDGLKEWARVEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLTNK 343

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G HWTR+ P RK 
Sbjct: 344 ---------TGVERAPVKRLDGGPKFERSFQKKDTSKPPPKPCFICDGPHWTRECPSRKA 403

Query: 121 LNALVTESHQK-----KVKMGFIYRMGALIKEVSSGNEEKE 157
           +NALV E   K     + ++G I R+  L KE+ +G E KE
Sbjct: 404 INALVAEMGPKIDEPSQGELGSIRRLSTL-KEMLTGAENKE 434

[Close]

BLAST of Bhi12G001963 vs. NCBI nr
Match: XP_008455798.1 (PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 61/159 (38.36%), Postives = 83/159 (52.20%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSA--KGKKIKK 60
           MLEI DL +KEALF FKDGL++WA+IELDR NV+TLD+AIA  + L+++SA  KGKK   
Sbjct: 186 MLEIGDLPEKEALFQFKDGLKDWAKIELDRRNVQTLDDAIAAVETLVDYSAQSKGKKPGP 245

Query: 61  DE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPV 120
           ++                                          PCF+ KG HWTRD P 
Sbjct: 246 EKHGGKPDKTKNFGRKDGGKVKTFQWKNGKNDGAHRGECSNPPKPCFICKGPHWTRDCPN 305

Query: 121 RKKLNALVTESHQKK-------VKMGFIYRMGALIKEVS 150
           RK LNALV +  + K        ++G + ++G + KE +
Sbjct: 306 RKALNALVAKFQEVKQVEDAPGPQIGSMQQIGVMKKETT 344

[Close]

BLAST of Bhi12G001963 vs. NCBI nr
Match: PWA77883.1 (hypothetical protein CTI12_AA219830 [Artemisia annua])

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-16
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFSAKGKKIKKDE 60
           +LEI D+ D++ALF+FKDGL+EWARIE+DR NVKTLD AIA A+ ++++S + ++   D+
Sbjct: 243 LLEIVDVPDQDALFYFKDGLKEWARIEIDRRNVKTLDEAIAAAESIVDYSNRPRRPLIDQ 302

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVRKK 120
                                                    PCF+  G+HWTRD P RK 
Sbjct: 303 -----EGVKRASPKRLDDRRDEGPKFEKSFQNKDMSKPPPKPCFICDGSHWTRDCPSRKA 362

Query: 121 LNALVTESHQKKVKMGFIYRMGALIKEVSSGNEEKETKDAKTKPKSKMGKWPRL--ASLK 180
           +NALV E      ++G I R+G  IKE+ +  + K+     T+ K    K   L      
Sbjct: 363 INALVAEMGSITEELGSIRRLGT-IKEILARAKTKDQGLLFTELKVNDMKTLGLIDTGAT 422

Query: 181 DNEGDMKEFEASKMESTKQ 198
           DN  D+KE E   ++ T +
Sbjct: 423 DNFLDVKEAECLGIKYTPE 435

[Close]

BLAST of Bhi12G001963 vs. NCBI nr
Match: XP_012089545.2 (LOW QUALITY PROTEIN: uncharacterized protein LOC105647934, partial [Jatropha curcas])

HSP 1 Score: 93.6 bits (231), Expect = 8.4e-16
Identity = 52/134 (38.81%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 1   MLEIDDLSDKEALFHFKDGLREWARIELDRCNVKTLDNAIATAKMLINFS--AKGKKIKK 60
           MLEIDDLSDK+ALF+FKDGL++W ++EL+R  V+TLD+AIA  + L ++S  AK KK   
Sbjct: 59  MLEIDDLSDKDALFYFKDGLKDWTKVELERRGVQTLDDAIAVVESLPDYSTQAKNKKPVP 118

Query: 61  DEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCFLRKGTHWTRDYPVR 120
            +                                         PCF+ +G HW RD P R
Sbjct: 119 SKSGGERQGQRKDHHRREDGPSKSFRGKHNTPFKRDYSKPPLTPCFICEGPHWVRDCPKR 178

Query: 121 KKLNALVTESHQKK 133
           K LNA+V E +++K
Sbjct: 179 KALNAMVAEPNKEK 192

The following BLAST results are available for this feature:

BLAST of Bhi12G001963 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001963 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001963 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2U1NEZ9\|A0A2U1NEZ9_ARTAN	1.7e-17	36.65	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA274570 PE=4 SV=1	[more]
tr\|A0A2U1PL38\|A0A2U1PL38_ARTAN	1.7e-17	36.65	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA095360 PE=4 SV=1	[more]
tr\|A0A1S3C1B3\|A0A1S3C1B3_CUCME	6.6e-17	38.36	uncharacterized protein LOC103495894 OS=Cucumis melo OX=3656 GN=LOC103495894 PE=...	[more]
tr\|A0A2U1NWJ0\|A0A2U1NWJ0_ARTAN	2.5e-16	34.67	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219830 PE=4 SV=1	[more]
tr\|A0A1S3BG92\|A0A1S3BG92_CUCME	1.2e-15	42.22	uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=...	[more]

BLAST of Bhi12G001963 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA72092.1	2.6e-17	36.65	hypothetical protein CTI12_AA274570 [Artemisia annua]	[more]
PWA86449.1	2.6e-17	36.65	hypothetical protein CTI12_AA095360 [Artemisia annua]	[more]
XP_008455798.1	1.0e-16	38.36	PREDICTED: uncharacterized protein LOC103495894 [Cucumis melo]	[more]
PWA77883.1	3.8e-16	34.67	hypothetical protein CTI12_AA219830 [Artemisia annua]	[more]
XP_012089545.2	8.4e-16	38.81	LOW QUALITY PROTEIN: uncharacterized protein LOC105647934, partial [Jatropha cur...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001963	Bhi12M001963	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..205

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001963	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001963	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001963	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001963	Cucurbita maxima (Rimu)	cmawgoB1094
Bhi12G001963	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001963	Cucurbita moschata (Rifu)	cmowgoB1088
Bhi12G001963	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001963	Cucurbita pepo (Zucchini)	cpewgoB0384
Bhi12G001963	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001963	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001963	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001963	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001963	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001963	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001963	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001963	Watermelon (97103) v2	wgowmbB094
Bhi12G001963	Watermelon (97103) v1	wgowmB093
Bhi12G001963	Silver-seed gourd	carwgoB0092
Bhi12G001963	Silver-seed gourd	carwgoB0172