Bhi12G001948 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001948
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC107854719
Location	chr12 : 69243728 .. 69243927 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGCCTAAAGAAGAAGTGACCCATGTGTGCGAGGTCCTCGCTTTAGAGGAGAACATGAAAGAACTAGAGCCACCAAGTCTAAGTGAGCGACGGATGAAACCAACGCGTCCATCACTAGAGGAACCACCAGAACATGAATTGAAACCATTACCTTGTCACCTGAAATATGCCTTCCTTGGAACAAACAAAACTTTACCT

mRNA sequence

AGTTGCCTAAAGAAGAAGTGACCCATGTGTGCGAGGTCCTCGCTTTAGAGGAGAACATGAAAGAACTAGAGCCACCAAGTCTAAGTGAGCGACGGATGAAACCAACGCGTCCATCACTAGAGGAACCACCAGAACATGAATTGAAACCATTACCTTGTCACCTGAAATATGCCTTCCTTGGAACAAACAAAACTTTACCT

Coding sequence (CDS)

AGTTGCCTAAAGAAGAAGTGACCCATGTGTGCGAGGTCCTCGCTTTAGAGGAGAACATGAAAGAACTAGAGCCACCAAGTCTAAGTGAGCGACGGATGAAACCAACGCGTCCATCACTAGAGGAACCACCAGAACATGAATTGAAACCATTACCTTGTCACCTGAAATATGCCTTCCTTGGAACAAACAAAACTTTACCT

Protein sequence

LPKEEVTHVCEVLALEENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP

Homology

[Close]

BLAST of Bhi12G001948 vs. TrEMBL
Match: tr|A0A1S4A220|A0A1S4A220_TOBAC (uncharacterized protein LOC107792929 OS=Nicotiana tabacum OX=4097 GN=LOC107792929 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-07
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 21  ELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           + EP  L ER   P +PS+EEPP+ +LKPLP HL+YAFLG N TLP
Sbjct: 357 QFEPLRLEERATPPAKPSIEEPPQLDLKPLPAHLRYAFLGANSTLP 402

[Close]

BLAST of Bhi12G001948 vs. TrEMBL
Match: tr|A0A1S4DDP6|A0A1S4DDP6_TOBAC (uncharacterized protein LOC107828517 OS=Nicotiana tabacum OX=4097 GN=LOC107828517 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-07
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VLALE     E   E EP  L +R   P +PS+EEPP+ ELKPLP HL+Y FLG N TLP
Sbjct: 378 VLALEGRGFWERNLEFEPLHLEKRETPPAKPSIEEPPKLELKPLPGHLRYEFLGPNSTLP 437

[Close]

BLAST of Bhi12G001948 vs. TrEMBL
Match: tr|A0A1U7W8D2|A0A1U7W8D2_NICSY (uncharacterized protein LOC104223691 OS=Nicotiana sylvestris OX=4096 GN=LOC104223691 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-07
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VL+LE     E   E EP  L +R   P +PS+EEPP+ ELKPLP HLKY FLG N TLP
Sbjct: 306 VLSLEGRGFWERNLEFEPLHLEKRETPPAKPSIEEPPKLELKPLPGHLKYEFLGPNSTLP 365

[Close]

BLAST of Bhi12G001948 vs. TrEMBL
Match: tr|A0A1S4DDA9|A0A1S4DDA9_TOBAC (uncharacterized protein LOC107828486 OS=Nicotiana tabacum OX=4097 GN=LOC107828486 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-07
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           V+ALE     +   + EP  L ER   P +PS+E+PP+ +LKPLP HL+YAFLG N TLP
Sbjct: 309 VMALEGQGFWKREPQFEPLRLEERETSPAKPSIEKPPQLDLKPLPAHLRYAFLGPNSTLP 368

[Close]

BLAST of Bhi12G001948 vs. TrEMBL
Match: tr|A0A1S3Y5B3|A0A1S3Y5B3_TOBAC (uncharacterized protein LOC107772111 OS=Nicotiana tabacum OX=4097 GN=LOC107772111 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-06
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VLALE     +   E EP  L +R   P +PS+EEPP+ ELKPLP HL+Y FLG + TLP
Sbjct: 794 VLALEGRGFWDRELEFEPLHLGKRETPPAKPSIEEPPKLELKPLPTHLRYEFLGPDSTLP 853

[Close]

BLAST of Bhi12G001948 vs. NCBI nr
Match: XP_019240253.1 (PREDICTED: uncharacterized protein LOC109220252 [Nicotiana attenuata])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VLALE     +   E EP  L ER+  P +PS+EEPP+ +LKPLP HL+YAFLG N TLP
Sbjct: 239 VLALEGQGFWKRELEFEPLHLEERKSPPAKPSIEEPPKLQLKPLPSHLRYAFLGPNSTLP 298

[Close]

BLAST of Bhi12G001948 vs. NCBI nr
Match: XP_009609919.1 (PREDICTED: uncharacterized protein LOC104103697, partial [Nicotiana tomentosiformis])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTL 66
           VLALE     +   E EP  L ER++ PT+PS+EEPP+ ELKPLP HLKYA LG N TL
Sbjct: 163 VLALEGQRFWKRELEFEPLHLEERKIHPTKPSIEEPPKLELKPLPPHLKYALLGPNSTL 221

[Close]

BLAST of Bhi12G001948 vs. NCBI nr
Match: XP_016470678.1 (PREDICTED: uncharacterized protein LOC107792929 [Nicotiana tabacum])

HSP 1 Score: 62.4 bits (150), Expect = 6.7e-07
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 21  ELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           + EP  L ER   P +PS+EEPP+ +LKPLP HL+YAFLG N TLP
Sbjct: 357 QFEPLRLEERATPPAKPSIEEPPQLDLKPLPAHLRYAFLGANSTLP 402

[Close]

BLAST of Bhi12G001948 vs. NCBI nr
Match: XP_009773461.1 (PREDICTED: uncharacterized protein LOC104223691, partial [Nicotiana sylvestris])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VL+LE     E   E EP  L +R   P +PS+EEPP+ ELKPLP HLKY FLG N TLP
Sbjct: 306 VLSLEGRGFWERNLEFEPLHLEKRETPPAKPSIEEPPKLELKPLPGHLKYEFLGPNSTLP 365

[Close]

BLAST of Bhi12G001948 vs. NCBI nr
Match: XP_016511334.1 (PREDICTED: uncharacterized protein LOC107828517 [Nicotiana tabacum])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 12  VLALE-----ENMKELEPPSLSERRMKPTRPSLEEPPEHELKPLPCHLKYAFLGTNKTLP 67
           VLALE     E   E EP  L +R   P +PS+EEPP+ ELKPLP HL+Y FLG N TLP
Sbjct: 378 VLALEGRGFWERNLEFEPLHLEKRETPPAKPSIEEPPKLELKPLPGHLRYEFLGPNSTLP 437

The following BLAST results are available for this feature:

BLAST of Bhi12G001948 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001948 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001948 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4A220\|A0A1S4A220_TOBAC	4.4e-07	60.87	uncharacterized protein LOC107792929 OS=Nicotiana tabacum OX=4097 GN=LOC10779292...	[more]
tr\|A0A1S4DDP6\|A0A1S4DDP6_TOBAC	7.6e-07	56.67	uncharacterized protein LOC107828517 OS=Nicotiana tabacum OX=4097 GN=LOC10782851...	[more]
tr\|A0A1U7W8D2\|A0A1U7W8D2_NICSY	7.6e-07	56.67	uncharacterized protein LOC104223691 OS=Nicotiana sylvestris OX=4096 GN=LOC10422...	[more]
tr\|A0A1S4DDA9\|A0A1S4DDA9_TOBAC	9.9e-07	51.67	uncharacterized protein LOC107828486 OS=Nicotiana tabacum OX=4097 GN=LOC10782848...	[more]
tr\|A0A1S3Y5B3\|A0A1S3Y5B3_TOBAC	3.7e-06	53.33	uncharacterized protein LOC107772111 OS=Nicotiana tabacum OX=4097 GN=LOC10777211...	[more]

BLAST of Bhi12G001948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019240253.1	2.3e-07	56.67	PREDICTED: uncharacterized protein LOC109220252 [Nicotiana attenuata]	[more]
XP_009609919.1	3.9e-07	59.32	PREDICTED: uncharacterized protein LOC104103697, partial [Nicotiana tomentosifor...	[more]
XP_016470678.1	6.7e-07	60.87	PREDICTED: uncharacterized protein LOC107792929 [Nicotiana tabacum]	[more]
XP_009773461.1	1.1e-06	56.67	PREDICTED: uncharacterized protein LOC104223691, partial [Nicotiana sylvestris]	[more]
XP_016511334.1	1.1e-06	56.67	PREDICTED: uncharacterized protein LOC107828517 [Nicotiana tabacum]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001948	Bhi12M001948	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..47

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001948	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001948	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001948	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001948	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001948	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001948	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001948	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001948	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001948	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001948	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001948	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001948	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001948	Watermelon (97103) v2	wgowmbB094
Bhi12G001948	Watermelon (97103) v1	wgowmB093
Bhi12G001948	Silver-seed gourd	carwgoB1045