Bhi12G001896 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001896
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Gag-pro-like protein
Location	chr12 : 66148887 .. 66149064 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAGGTGTGAATATCATGTTGAGGCAGTAGGGCACTCTATTAAGAATTGTTATACCTTGAAAGCTAAAGTACAAAGTTTAGTTAAGGTCGACTGGTTAAAATTAAAGAAGACCAGAGAAGAACCGGATGTCAATCAAAACCCACTCCCAAACCATGAAAATCTTGTCATAAGTATT

mRNA sequence

TGTAAGGTGTGAATATCATGTTGAGGCAGTAGGGCACTCTATTAAGAATTGTTATACCTTGAAAGCTAAAGTACAAAGTTTAGTTAAGGTCGACTGGTTAAAATTAAAGAAGACCAGAGAAGAACCGGATGTCAATCAAAACCCACTCCCAAACCATGAAAATCTTGTCATAAGTATT

Coding sequence (CDS)

TGTAAGGTGTGAATATCATGTTGAGGCAGTAGGGCACTCTATTAAGAATTGTTATACCTTGAAAGCTAAAGTACAAAGTTTAGTTAAGGTCGACTGGTTAAAATTAAAGAAGACCAGAGAAGAACCGGATGTCAATCAAAACCCACTCCCAAACCATGAAAATCTTGTCATAAGTATT

Protein sequence

VRCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI

Homology

[Close]

BLAST of Bhi12G001896 vs. TrEMBL
Match: tr|A0A1S4E534|A0A1S4E534_CUCME (uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-16
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   VRCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           V+CEYHV  VGHS +NC+ LKAKVQSLVK  WLK KKT EE DVNQNPLPNHE   I+I
Sbjct: 395 VKCEYHVGIVGHSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINI 453

[Close]

BLAST of Bhi12G001896 vs. TrEMBL
Match: tr|A0A1S4E6E2|A0A1S4E6E2_CUCME (uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           RC+YH   +GHS KNC  LK KV+SL+ V WL  KK+ E+P+VN+NPLP+HEN  +++
Sbjct: 164 RCDYHAGGMGHSTKNCLALKRKVKSLINVGWLSFKKSGEKPNVNENPLPDHENPKVNV 221

[Close]

BLAST of Bhi12G001896 vs. TrEMBL
Match: tr|A0A1S4E260|A0A1S4E260_CUCME (uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           RCEYH    GHS +NC  L+ KVQSL+    L  KK+ E+P+VN+NP PNHEN  +++
Sbjct: 196 RCEYHAGGAGHSNENCLALRRKVQSLINARCLSFKKSSEKPNVNENPRPNHENTKVNV 253

[Close]

BLAST of Bhi12G001896 vs. TrEMBL
Match: tr|A0A1S3EG74|A0A1S3EG74_CICAR (uncharacterized protein LOC101511496 OS=Cicer arietinum OX=3827 GN=LOC101511496 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVIS 59
           +CEYH  AVGHSI++C  LK+KVQ L+   WL  K+  + P++  NPLP H N  ++
Sbjct: 649 KCEYHAGAVGHSIEDCQALKSKVQELINAKWLTFKE--DNPNIGSNPLPGHGNASVN 703

[Close]

BLAST of Bhi12G001896 vs. TrEMBL
Match: tr|A0A151QQK1|A0A151QQK1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_046689 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNH 53
           +C+YH  A+ HSI+NC  LK KVQSL K  WL  K+  + P++  NPLP H
Sbjct: 359 KCDYHAGAISHSIENCRALKTKVQSLTKAGWLNFKE--DNPNIGNNPLPGH 407

[Close]

BLAST of Bhi12G001896 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 5.4e-16
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   VRCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           V+CEYHV  VGHS +NC+ LKAKVQSLVK  WLK KKT EE DVNQNPLPNHE   I+I
Sbjct: 395 VKCEYHVGIVGHSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINI 453

[Close]

BLAST of Bhi12G001896 vs. NCBI nr
Match: XP_016903535.1 (PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           RC+YH   +GHS KNC  LK KV+SL+ V WL  KK+ E+P+VN+NPLP+HEN  +++
Sbjct: 164 RCDYHAGGMGHSTKNCLALKRKVKSLINVGWLSFKKSGEKPNVNENPLPDHENPKVNV 221

[Close]

BLAST of Bhi12G001896 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVIS 59
           RC+YH  A+GHS +NC  LK +VQ+L+K  WL  KK    PDV++NPLPNH+N+ I+
Sbjct: 389 RCDYHAGAIGHSTENCTALKYRVQALIKAGWLNFKK-ENGPDVSKNPLPNHQNVQIN 444

[Close]

BLAST of Bhi12G001896 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVIS 59
           RC+YH  A+GHSI+NC  LK +VQ+L+K  WL  KK    P+V+ NPLPNH N+ I+
Sbjct: 324 RCDYHTGAIGHSIENCTALKYRVQALIKAGWLNFKK-ENGPBVSNNPLPNHXNVQIN 379

[Close]

BLAST of Bhi12G001896 vs. NCBI nr
Match: XP_016902319.1 (PREDICTED: uncharacterized protein LOC107991629 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 2   RCEYHVEAVGHSIKNCYTLKAKVQSLVKVDWLKLKKTREEPDVNQNPLPNHENLVISI 60
           RCEYH    GHS +NC  L+ KVQSL+    L  KK+ E+P+VN+NP PNHEN  +++
Sbjct: 196 RCEYHAGGAGHSNENCLALRRKVQSLINARCLSFKKSSEKPNVNENPRPNHENTKVNV 253

The following BLAST results are available for this feature:

BLAST of Bhi12G001896 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001896 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001896 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E534\|A0A1S4E534_CUCME	3.6e-16	72.88	uncharacterized protein LOC103502838 OS=Cucumis melo OX=3656 GN=LOC103502838 PE=...	[more]
tr\|A0A1S4E6E2\|A0A1S4E6E2_CUCME	4.1e-12	55.17	uncharacterized protein LOC103504025 OS=Cucumis melo OX=3656 GN=LOC103504025 PE=...	[more]
tr\|A0A1S4E260\|A0A1S4E260_CUCME	6.5e-10	51.72	uncharacterized protein LOC107991629 OS=Cucumis melo OX=3656 GN=LOC107991629 PE=...	[more]
tr\|A0A1S3EG74\|A0A1S3EG74_CICAR	1.0e-07	47.37	uncharacterized protein LOC101511496 OS=Cicer arietinum OX=3827 GN=LOC101511496 ...	[more]
tr\|A0A151QQK1\|A0A151QQK1_CAJCA	5.2e-07	50.98	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_046689 PE=4 SV=1	[more]

BLAST of Bhi12G001896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903339.1	5.4e-16	72.88	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
XP_016903535.1	6.2e-12	55.17	PREDICTED: uncharacterized protein LOC103504025 [Cucumis melo]	[more]
XP_022158986.1	5.8e-10	54.39	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022143495.1	7.6e-10	54.39	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]
XP_016902319.1	9.9e-10	51.72	PREDICTED: uncharacterized protein LOC107991629 [Cucumis melo]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001896	Bhi12M001896	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001896	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001896	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001896	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001896	Cucurbita maxima (Rimu)	cmawgoB1099
Bhi12G001896	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001896	Cucurbita moschata (Rifu)	cmowgoB1093
Bhi12G001896	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001896	Cucurbita pepo (Zucchini)	cpewgoB0381
Bhi12G001896	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001896	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001896	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001896	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001896	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001896	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001896	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001896	Watermelon (97103) v2	wgowmbB094
Bhi12G001896	Watermelon (97103) v1	wgowmB093
Bhi12G001896	Silver-seed gourd	carwgoB0667
Bhi12G001896	Silver-seed gourd	carwgoB0713