Bhi12G001864 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001864
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr12 : 65232554 .. 65233027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAGATATCAAAGAATAATACAGATCCATTGTGCCATAAATATCACTCTCCTAATGATATCTTAACACAAGCTTTAGGTACTCAAGAAAGGCATGGGCGTGTGCATGGGGTTGGTGGTTTTGTTACTCCAACGGCTTACTTTCAAGCAGTGAAACGAAAATCAAAACATGGGAAGTATGAAAACAAGGAAATTGTAAGTAAGAATGAAGCACTTCGTCAACGTGTTATAAAGTTAGAAGCTCGTCTTCAAATGTCATCTTCTATAGCATTTTCTGGACATGAAAGTTGCTCCAAGCAATTTTTAGCAGATGAAATCAAATCTCAAGATAAACATAAAGATAAGATGAAGACTGCATATGAAAAGAAACAGAAAGAGAAGATTGAGGTGGAAGAGATTAAGTCTCTTGAGAAACGAAGAGACAAGATAAAGGTGAATGTAAATTGCAACGCAGAAGATTTGAAAATCTTTAAG

mRNA sequence

GATGAGATATCAAAGAATAATACAGATCCATTGTGCCATAAATATCACTCTCCTAATGATATCTTAACACAAGCTTTAGGTACTCAAGAAAGGCATGGGCGTGTGCATGGGGTTGGTGGTTTTGTTACTCCAACGGCTTACTTTCAAGCAGTGAAACGAAAATCAAAACATGGGAAGTATGAAAACAAGGAAATTGTAAGTAAGAATGAAGCACTTCGTCAACGTGTTATAAAGTTAGAAGCTCGTCTTCAAATGTCATCTTCTATAGCATTTTCTGGACATGAAAGTTGCTCCAAGCAATTTTTAGCAGATGAAATCAAATCTCAAGATAAACATAAAGATAAGATGAAGACTGCATATGAAAAGAAACAGAAAGAGAAGATTGAGGTGGAAGAGATTAAGTCTCTTGAGAAACGAAGAGACAAGATAAAGGTGAATGTAAATTGCAACGCAGAAGATTTGAAAATCTTTAAG

Coding sequence (CDS)

GATGAGATATCAAAGAATAATACAGATCCATTGTGCCATAAATATCACTCTCCTAATGATATCTTAACACAAGCTTTAGGTACTCAAGAAAGGCATGGGCGTGTGCATGGGGTTGGTGGTTTTGTTACTCCAACGGCTTACTTTCAAGCAGTGAAACGAAAATCAAAACATGGGAAGTATGAAAACAAGGAAATTGTAAGTAAGAATGAAGCACTTCGTCAACGTGTTATAAAGTTAGAAGCTCGTCTTCAAATGTCATCTTCTATAGCATTTTCTGGACATGAAAGTTGCTCCAAGCAATTTTTAGCAGATGAAATCAAATCTCAAGATAAACATAAAGATAAGATGAAGACTGCATATGAAAAGAAACAGAAAGAGAAGATTGAGGTGGAAGAGATTAAGTCTCTTGAGAAACGAAGAGACAAGATAAAGGTGAATGTAAATTGCAACGCAGAAGATTTGAAAATCTTTAAG

Protein sequence

DEISKNNTDPLCHKYHSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSKHGKYENKEIVSKNEALRQRVIKLEARLQMSSSIAFSGHESCSKQFLADEIKSQDKHKDKMKTAYEKKQKEKIEVEEIKSLEKRRDKIKVNVNCNAEDLKIFK

Homology

[Close]

BLAST of Bhi12G001864 vs. TrEMBL
Match: tr|A0A1S4E506|A0A1S4E506_CUCME (uncharacterized protein LOC107992120 OS=Cucumis melo OX=3656 GN=LOC107992120 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   DEISKNNTDPLCHKYHSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSKHGKY 60
           DEIS  NTD      H  ND+LTQALGT+E +GRV GVGG+VTPT YF +VK+ SK    
Sbjct: 41  DEISM-NTDSSSVNRHYSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSK---- 100

Query: 61  ENKEIVSKNEALRQ 75
           +  +I+ +NE LR+
Sbjct: 101 DETKILVENEELRR 109

[Close]

BLAST of Bhi12G001864 vs. TrEMBL
Match: tr|A0A2P6PQW5|A0A2P6PQW5_ROSCH (Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0271081 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.4e-04
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 1   DEISKNNTDPLCHKYHSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSKHGKY 60
           DE+ K  +D +  K    ND+LT AL   E  GRV GVGG+VTPT YF   +R  + G  
Sbjct: 208 DELKKQVSDGML-KVDGSNDVLTMALEISEHGGRVRGVGGYVTPTVYFNQPRR--RRGNV 267

Query: 61  EN------KEIVSKNEALRQRVI 78
           E       K+I+ +    R++V+
Sbjct: 268 EEAVRVSVKKILDEERGEREKVV 287

[Close]

BLAST of Bhi12G001864 vs. NCBI nr
Match: XP_016903309.1 (PREDICTED: uncharacterized protein LOC107992120 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   DEISKNNTDPLCHKYHSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSKHGKY 60
           DEIS  NTD      H  ND+LTQALGT+E +GRV GVGG+VTPT YF +VK+ SK    
Sbjct: 41  DEISM-NTDSSSVNRHYSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKTSK---- 100

Query: 61  ENKEIVSKNEALRQ 75
           +  +I+ +NE LR+
Sbjct: 101 DETKILVENEELRR 109

[Close]

BLAST of Bhi12G001864 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 49/118 (41.53%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   DEISKNNTDPLCHKYHSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSKHGKY 60
           D+IS+   D    K  SPND L QALGT E  GRV GVGGFVT TAYF      SKH K 
Sbjct: 121 DDISRIYVD----KEPSPND-LAQALGTNEHSGRVRGVGGFVTRTAYFHT----SKHSKK 180

Query: 61  ENKEIV---SKNEALRQRVIKLEARLQMSSSIAFSGHESCSKQFLADEIKSQDKHKDK 116
           +++ I     +NE L   V +LE+    + S     H SCS+  L  +I+ ++K +++
Sbjct: 181 QSENIEKLREENEKLCLGVQELESIHLTTQSTPTYAHASCSRPRLEYDIQPKEKLQEE 229

[Close]

BLAST of Bhi12G001864 vs. NCBI nr
Match: XP_022136079.1 (uncharacterized protein LOC111007859 isoform X3 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16  HSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSK 57
           H   DILT+ALGT E  GRV GVG FV+P+ YF  VK KSK
Sbjct: 242 HKGEDILTEALGTSEHSGRVRGVGEFVSPSLYFNVVKGKSK 282

[Close]

BLAST of Bhi12G001864 vs. NCBI nr
Match: XP_022136080.1 (uncharacterized protein LOC111007859 isoform X4 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16  HSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSK 57
           H   DILT+ALGT E  GRV GVG FV+P+ YF  VK KSK
Sbjct: 242 HKGEDILTEALGTSEHSGRVRGVGEFVSPSLYFNVVKGKSK 282

[Close]

BLAST of Bhi12G001864 vs. NCBI nr
Match: XP_022136077.1 (uncharacterized protein LOC111007859 isoform X2 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 16  HSPNDILTQALGTQERHGRVHGVGGFVTPTAYFQAVKRKSK 57
           H   DILT+ALGT E  GRV GVG FV+P+ YF  VK KSK
Sbjct: 241 HKGEDILTEALGTSEHSGRVRGVGEFVSPSLYFNVVKGKSK 281

The following BLAST results are available for this feature:

BLAST of Bhi12G001864 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001864 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001864 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E506\|A0A1S4E506_CUCME	1.0e-09	54.05	uncharacterized protein LOC107992120 OS=Cucumis melo OX=3656 GN=LOC107992120 PE=...	[more]
tr\|A0A2P6PQW5\|A0A2P6PQW5_ROSCH	8.4e-04	38.55	Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

BLAST of Bhi12G001864 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903309.1	1.5e-09	54.05	PREDICTED: uncharacterized protein LOC107992120 [Cucumis melo]	[more]
XP_011656204.1	1.2e-06	41.53	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]
XP_022136079.1	2.6e-04	63.41	uncharacterized protein LOC111007859 isoform X3 [Momordica charantia]	[more]
XP_022136080.1	2.6e-04	63.41	uncharacterized protein LOC111007859 isoform X4 [Momordica charantia]	[more]
XP_022136077.1	2.6e-04	63.41	uncharacterized protein LOC111007859 isoform X2 [Momordica charantia]	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001864	Bhi12M001864	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001864	Cucumber (Gy14) v1	cgywgoB263
Bhi12G001864	Cucumber (Gy14) v2	cgybwgoB515
Bhi12G001864	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001864	Cucurbita maxima (Rimu)	cmawgoB1099
Bhi12G001864	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001864	Cucurbita moschata (Rifu)	cmowgoB1093
Bhi12G001864	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001864	Cucurbita pepo (Zucchini)	cpewgoB0381
Bhi12G001864	Wild cucumber (PI 183967)	cpiwgoB543
Bhi12G001864	Cucumber (Chinese Long) v3	cucwgoB555
Bhi12G001864	Cucumber (Chinese Long) v2	cuwgoB539
Bhi12G001864	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001864	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001864	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001864	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001864	Watermelon (97103) v2	wgowmbB094
Bhi12G001864	Watermelon (97103) v1	wgowmB093
Bhi12G001864	Silver-seed gourd	carwgoB0713
Bhi12G001864	Silver-seed gourd	carwgoB0733