Bhi12G001340 (gene) Wax gourd

Overview
NameBhi12G001340
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionF-box/WD repeat-containing protein sel-10-like
Locationchr12 : 49563213 .. 49563404 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

mRNA sequence

ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

Coding sequence (CDS)

ATGGACAAAATGGAAACGAGTGTTCTGGTTTATAATGGGAGTTTGGATAAGACTTTTAAGGTGTGGAGAATGAAGGTTTTGTTGGGTCATAATGATCAAGAAAAAAGCGGGTTATTGAAGTATAAGAAGGAGGATAAGAACTTGAAGATTTTGAAGCTCTATGAGATTGCCCTATCTTGTCTCCTCTTTTGA

Protein sequence

MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKEDKNLKILKLYEIALSCLLF
Homology
[Close]
BLAST of Bhi12G001340 vs. TrEMBL
Match: tr|A0A1S3CRS7|A0A1S3CRS7_CUCME (F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103504006 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-10
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKE--DKNLKILKLYE 56
           M+KMETSVLVY+GSLD+TFKVW +KV L HN+Q+K  L++Y++E  +++LK+ KLYE
Sbjct: 71  MNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYE 127

[Close]
BLAST of Bhi12G001340 vs. NCBI nr
Match: XP_004136407.2 (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKEDKNLKILKLYE 56
           M+KME SVLVY+GSLD+TFKVWR+ V L HNDQEK GL++ ++E+++LK+ KLYE
Sbjct: 640 MNKMERSVLVYSGSLDQTFKVWRVMVFLNHNDQEK-GLMECEEEEEDLKMKKLYE 693

[Close]
BLAST of Bhi12G001340 vs. NCBI nr
Match: XP_008466650.1 (PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-10
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1   MDKMETSVLVYNGSLDKTFKVWRMKVLLGHNDQEKSGLLKYKKE--DKNLKILKLYE 56
           M+KMETSVLVY+GSLD+TFKVW +KV L HN+Q+K  L++Y++E  +++LK+ KLYE
Sbjct: 71  MNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYE 127

The following BLAST results are available for this feature:
BLAST of Bhi12G001340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G001340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G001340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CRS7|A0A1S3CRS7_CUCME5.3e-1061.40F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
BLAST of Bhi12G001340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136407.22.8e-1065.45PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus][more]
XP_008466650.18.1e-1061.40PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001340Bhi12M001340mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G001340Cucumber (Gy14) v1cgywgoB510
Bhi12G001340Cucumber (Gy14) v2cgybwgoB117
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB0311
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB0455
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB0637
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB0637
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB0716
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB0997
Bhi12G001340Cucurbita maxima (Rimu)cmawgoB1090
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB0299
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB0457
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB0710
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB0995
Bhi12G001340Cucurbita moschata (Rifu)cmowgoB1084
Bhi12G001340Cucurbita pepo (Zucchini)cpewgoB0176
Bhi12G001340Cucurbita pepo (Zucchini)cpewgoB0765
Bhi12G001340Cucurbita pepo (Zucchini)cpewgoB0923
Bhi12G001340Wild cucumber (PI 183967)cpiwgoB122
Bhi12G001340Wild cucumber (PI 183967)cpiwgoB251
Bhi12G001340Cucumber (Chinese Long) v3cucwgoB129
Bhi12G001340Cucumber (Chinese Long) v3cucwgoB254
Bhi12G001340Cucumber (Chinese Long) v2cuwgoB121
Bhi12G001340Cucumber (Chinese Long) v2cuwgoB251
Bhi12G001340Bottle gourd (USVL1VR-Ls)lsiwgoB007
Bhi12G001340Bottle gourd (USVL1VR-Ls)lsiwgoB421
Bhi12G001340Melon (DHL92) v3.6.1medwgoB449
Bhi12G001340Melon (DHL92) v3.6.1medwgoB453
Bhi12G001340Melon (DHL92) v3.6.1medwgoB515
Bhi12G001340Melon (DHL92) v3.5.1mewgoB446
Bhi12G001340Melon (DHL92) v3.5.1mewgoB450
Bhi12G001340Melon (DHL92) v3.5.1mewgoB514
Bhi12G001340Watermelon (Charleston Gray)wcgwgoB412
Bhi12G001340Watermelon (Charleston Gray)wcgwgoB503
Bhi12G001340Watermelon (97103) v2wgowmbB072
Bhi12G001340Watermelon (97103) v2wgowmbB097
Bhi12G001340Watermelon (97103) v1wgowmB062
Bhi12G001340Watermelon (97103) v1wgowmB106
Bhi12G001340Silver-seed gourdcarwgoB0282
Bhi12G001340Silver-seed gourdcarwgoB0290
Bhi12G001340Silver-seed gourdcarwgoB0911
Bhi12G001340Silver-seed gourdcarwgoB1114