Bhi12G001244 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001244
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	rRNA intron-encoded homing endonuclease
Location	chr12 : 46742403 .. 46742621 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCCAAGGCTGAAACTTAA

mRNA sequence

ATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCCAAGGCTGAAACTTAA

Coding sequence (CDS)

ATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCCAAGGCTGAAACTTAA

Protein sequence

MKDEQLRKHLPRMFSLIKERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGGVWSKAET

Homology

[Close]

BLAST of Bhi12G001244 vs. TrEMBL
Match: tr|A0A0A0LDF7|A0A0A0LDF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-12
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 18 KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
          +ERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYE       GG
Sbjct: 42 QERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGG 89

[Close]

BLAST of Bhi12G001244 vs. TrEMBL
Match: tr|A0A2P5RAH4|A0A2P5RAH4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19274 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 14  FSLIKERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
           + +++ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 270 YFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGG 321

[Close]

BLAST of Bhi12G001244 vs. TrEMBL
Match: tr|A0A0D2ZPC4|A0A0D2ZPC4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 18  KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGGVWSK 70
           +ER LGA+RRSDTVLVSTINDADQG ADVA RTP APYE       GGVWS+
Sbjct: 266 QERNLGAQRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGVWSQ 317

[Close]

BLAST of Bhi12G001244 vs. TrEMBL
Match: tr|M1DUP9|M1DUP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 18  KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
           +ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 115 QERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGG 162

[Close]

BLAST of Bhi12G001244 vs. TrEMBL
Match: tr|M1DMU8|M1DMU8_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 18  KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
           +ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 69  QERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGG 116

[Close]

BLAST of Bhi12G001244 vs. NCBI nr
Match: KGN58106.1 (hypothetical protein Csa_3G512980 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-12
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 18 KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
          +ERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYE       GG
Sbjct: 42 QERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGG 89

[Close]

BLAST of Bhi12G001244 vs. NCBI nr
Match: PPD83804.1 (hypothetical protein GOBAR_DD19274 [Gossypium barbadense])

HSP 1 Score: 78.6 bits (192), Expect = 9.8e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 14  FSLIKERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
           + +++ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 270 YFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGG 321

[Close]

BLAST of Bhi12G001244 vs. NCBI nr
Match: ESQ47375.1 (hypothetical protein EUTSA_v10028304mg, partial [Eutrema salsugineum])

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-11
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 14  FSLIKERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPG 65
           + +++ERKLGARRRSDTVLVSTINDADQG ADVA RTP APYE   L + G
Sbjct: 74  YFIVRERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKLKLKG 124

[Close]

BLAST of Bhi12G001244 vs. NCBI nr
Match: XP_024924876.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 [Ziziphus jujuba])

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-11
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 18   KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
            +ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 1408 QERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKFLGSGG 1455

[Close]

BLAST of Bhi12G001244 vs. NCBI nr
Match: XP_024925474.1 (uncharacterized protein LOC112490178 [Ziziphus jujuba])

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-11
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 18  KERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYENQSLWVPGG 66
           +ERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYE       GG
Sbjct: 671 QERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKFLGSGG 718

The following BLAST results are available for this feature:

BLAST of Bhi12G001244 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G001244 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi12G001244 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDF7\|A0A0A0LDF7_CUCSA	3.8e-12	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1	[more]
tr\|A0A2P5RAH4\|A0A2P5RAH4_GOSBA	6.5e-12	73.08	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19274 PE=4 SV...	[more]
tr\|A0A0D2ZPC4\|A0A0D2ZPC4_BRAOL	1.9e-11	73.08	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
tr\|M1DUP9\|M1DUP9_SOLTU	3.2e-11	79.17	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|M1DMU8\|M1DMU8_SOLTU	3.2e-11	79.17	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of Bhi12G001244 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58106.1	5.8e-12	83.33	hypothetical protein Csa_3G512980 [Cucumis sativus]	[more]
PPD83804.1	9.8e-12	73.08	hypothetical protein GOBAR_DD19274 [Gossypium barbadense]	[more]
ESQ47375.1	6.4e-11	72.55	hypothetical protein EUTSA_v10028304mg, partial [Eutrema salsugineum]	[more]
XP_024924876.1	6.4e-11	79.17	LOW QUALITY PROTEIN: uncharacterized protein LOC112489936 [Ziziphus jujuba]	[more]
XP_024925474.1	6.4e-11	79.17	uncharacterized protein LOC112490178 [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001244	Bhi12M001244	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	FAMILY NOT NAMED	coord: 16..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001244	Cucumber (Gy14) v1	cgywgoB541
Bhi12G001244	Cucumber (Gy14) v2	cgybwgoB118
Bhi12G001244	Cucurbita maxima (Rimu)	cmawgoB0455
Bhi12G001244	Cucurbita maxima (Rimu)	cmawgoB1101
Bhi12G001244	Cucurbita moschata (Rifu)	cmowgoB0457
Bhi12G001244	Cucurbita moschata (Rifu)	cmowgoB1095
Bhi12G001244	Cucurbita pepo (Zucchini)	cpewgoB0176
Bhi12G001244	Cucurbita pepo (Zucchini)	cpewgoB0383
Bhi12G001244	Wild cucumber (PI 183967)	cpiwgoB123
Bhi12G001244	Cucumber (Chinese Long) v3	cucwgoB130
Bhi12G001244	Cucumber (Chinese Long) v2	cuwgoB122
Bhi12G001244	Bottle gourd (USVL1VR-Ls)	lsiwgoB007
Bhi12G001244	Melon (DHL92) v3.6.1	medwgoB448
Bhi12G001244	Melon (DHL92) v3.5.1	mewgoB445
Bhi12G001244	Watermelon (Charleston Gray)	wcgwgoB503
Bhi12G001244	Watermelon (97103) v2	wgowmbB097
Bhi12G001244	Watermelon (97103) v1	wgowmB106
Bhi12G001244	Silver-seed gourd	carwgoB0282
Bhi12G001244	Silver-seed gourd	carwgoB1262