Bhi12G001211 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001211
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	DNA helicase
Location	chr12 : 45034282 .. 45034562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGATTACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAAGGAGAGTTTATTATCCGTAACTCGCAACATTTTTATCGAGAAAATGCAGCTTGGAGGACCCTCCATGTGTCTGACTGAGGTCTGCTGCTAACTTTTACTGTGTGCAATAACTTTACTTGTTAAGTTAAAGTTAAATTCTAAATCTTTCCAATTCTTCTGTAGTTGCTGGATGAGCTGAAGAAGAAGAATCTTAATAATGAAGTCCATCTCAACAATGTATATTACATCTCTTAA

mRNA sequence

ATGGATCTGATTACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAAGGAGAGTTTATTATCCGTAACTCGCAACATTTTTATCGAGAAAATGCAGCTTGGAGGACCCTCCATGTGTCTGACTGAGTTGCTGGATGAGCTGAAGAAGAAGAATCTTAATAATGAAGTCCATCTCAACAATGTATATTACATCTCTTAA

Coding sequence (CDS)

ATGGATCTGATTACCACGGGAGTATCGGCAAGCGAAAGGATGCGAAAGGAGAGTTTATTATCCGTAACTCGCAACATTTTTATCGAGAAAATGCAGCTTGGAGGACCCTCCATGTGTCTGACTGAGTTGCTGGATGAGCTGAAGAAGAAGAATCTTAATAATGAAGTCCATCTCAACAATGTATATTACATCTCTTAA

Protein sequence

MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNNVYYIS

Homology

[Close]

BLAST of Bhi12G001211 vs. Swiss-Prot
Match: sp|Q0WVF5|MCM4_ARATH (DNA replication licensing factor MCM4 OS=Arabidopsis thaliana OX=3702 GN=MCM4 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-13
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKK--NLNNEVHL 60
           MDLI TGVSASERMR+++  S  R+I +EKMQ+GG SM L+ELL+ELKK   N+N E+HL
Sbjct: 762 MDLINTGVSASERMRRDTFASSIRDIALEKMQIGGSSMRLSELLEELKKHGGNINTEIHL 821

Query: 61  NNV 62
           ++V
Sbjct: 822 HDV 824

[Close]

BLAST of Bhi12G001211 vs. Swiss-Prot
Match: sp|Q5JKB0|MCM4_ORYSJ (DNA replication licensing factor MCM4 OS=Oryza sativa subsp. japonica OX=39947 GN=MCM4 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 7.9e-12
Identity = 34/61 (55.74%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLI TG+SASER R+++L++ TRN+ +EKMQLGGPS+ + ELL+E++K++ + EVHL++
Sbjct: 780 MDLIMTGISASERQRRDNLVAATRNLVMEKMQLGGPSVRMIELLEEIRKQS-SMEVHLHD 839

Query: 61  V 62
           +
Sbjct: 840 L 839

[Close]

BLAST of Bhi12G001211 vs. TAIR10
Match: AT2G16440.1 (Minichromosome maintenance (MCM2/3/5) family protein)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-14
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKK--NLNNEVHL 60
           MDLI TGVSASERMR+++  S  R+I +EKMQ+GG SM L+ELL+ELKK   N+N E+HL
Sbjct: 762 MDLINTGVSASERMRRDTFASSIRDIALEKMQIGGSSMRLSELLEELKKHGGNINTEIHL 821

Query: 61  NNV 62
           ++V
Sbjct: 822 HDV 824

[Close]

BLAST of Bhi12G001211 vs. TrEMBL
Match: tr|A0A1S3BIA1|A0A1S3BIA1_CUCME (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103490357 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN +NEVHLNN
Sbjct: 761 MDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNN 820

Query: 61  V 62
           +
Sbjct: 821 L 821

[Close]

BLAST of Bhi12G001211 vs. TrEMBL
Match: tr|A0A1S3BJS1|A0A1S3BJS1_CUCME (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103490357 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN +NEVHLNN
Sbjct: 789 MDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNN 848

Query: 61  V 62
           +
Sbjct: 849 L 849

[Close]

BLAST of Bhi12G001211 vs. TrEMBL
Match: tr|A0A0A0K5P7|A0A0A0K5P7_CUCSA (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G004140 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-18
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVS+SER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN  NEVHLNN
Sbjct: 761 MDLITTGVSSSERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPENEVHLNN 820

Query: 61  V 62
           +
Sbjct: 821 L 821

[Close]

BLAST of Bhi12G001211 vs. TrEMBL
Match: tr|B9RHA7|B9RHA7_RICCO (DNA helicase OS=Ricinus communis OX=3988 GN=RCOM_1449150 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-15
Identity = 43/61 (70.49%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASERMR+E+L+S TRNI +EK+QLGGPSM L E+++ELKK+N +NEVHL +
Sbjct: 784 MDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRLLEIMEELKKQNTSNEVHLQD 843

Query: 61  V 62
           +
Sbjct: 844 L 844

[Close]

BLAST of Bhi12G001211 vs. TrEMBL
Match: tr|A0A2I4G8U9|A0A2I4G8U9_9ROSI (DNA helicase OS=Juglans regia OX=51240 GN=LOC109005731 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-15
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASERMR+ESLLS TRNI +EK+QLGGPSM L ELL+ELKK+   +EVHLN+
Sbjct: 764 MDLITTGVSASERMRRESLLSTTRNIIMEKIQLGGPSMRLLELLEELKKQISGSEVHLND 823

Query: 61  V 62
           +
Sbjct: 824 L 824

[Close]

BLAST of Bhi12G001211 vs. NCBI nr
Match: XP_008448069.1 (PREDICTED: DNA replication licensing factor MCM4 isoform X1 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN +NEVHLNN
Sbjct: 789 MDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNN 848

Query: 61  V 62
           +
Sbjct: 849 L 849

[Close]

BLAST of Bhi12G001211 vs. NCBI nr
Match: XP_008448070.1 (PREDICTED: DNA replication licensing factor MCM4 isoform X2 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN +NEVHLNN
Sbjct: 761 MDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNN 820

Query: 61  V 62
           +
Sbjct: 821 L 821

[Close]

BLAST of Bhi12G001211 vs. NCBI nr
Match: XP_022925017.1 (DNA replication licensing factor MCM4-like [Cucurbita moschata])

HSP 1 Score: 99.0 bits (245), Expect = 6.4e-18
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASERMR+E++LS TRNI +EKMQLGGPSM LTELLDELKK+N +NEVHLNN
Sbjct: 762 MDLITTGVSASERMRRETILSATRNIIMEKMQLGGPSMRLTELLDELKKQNPDNEVHLNN 821

Query: 61  V 62
           +
Sbjct: 822 L 822

[Close]

BLAST of Bhi12G001211 vs. NCBI nr
Match: XP_004148531.1 (PREDICTED: DNA replication licensing factor MCM4 [Cucumis sativus] >KGN43161.1 hypothetical protein Csa_7G004140 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVS+SER+R+ESLLS TRNI +EKMQLGGPSM L+ELLDELKKKN  NEVHLNN
Sbjct: 761 MDLITTGVSSSERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPENEVHLNN 820

Query: 61  V 62
           +
Sbjct: 821 L 821

[Close]

BLAST of Bhi12G001211 vs. NCBI nr
Match: XP_022969442.1 (DNA replication licensing factor MCM4 isoform X1 [Cucurbita maxima] >XP_022969443.1 DNA replication licensing factor MCM4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1   MDLITTGVSASERMRKESLLSVTRNIFIEKMQLGGPSMCLTELLDELKKKNLNNEVHLNN 60
           MDLITTGVSASERMR+ESLLS TRNI +EKMQLGGPS+ L+ELLDELKK+N +NEVHLNN
Sbjct: 762 MDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSIRLSELLDELKKQNPDNEVHLNN 821

Query: 61  V 62
           +
Sbjct: 822 L 822

The following BLAST results are available for this feature:

BLAST of Bhi12G001211 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0WVF5\|MCM4_ARATH	9.4e-13	61.90	DNA replication licensing factor MCM4 OS=Arabidopsis thaliana OX=3702 GN=MCM4 PE...	[more]
sp\|Q5JKB0\|MCM4_ORYSJ	7.9e-12	55.74	DNA replication licensing factor MCM4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Bhi12G001211 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G16440.1	5.2e-14	61.90	Minichromosome maintenance (MCM2/3/5) family protein	[more]

BLAST of Bhi12G001211 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIA1\|A0A1S3BIA1_CUCME	2.5e-18	83.61	DNA helicase OS=Cucumis melo OX=3656 GN=LOC103490357 PE=3 SV=1	[more]
tr\|A0A1S3BJS1\|A0A1S3BJS1_CUCME	2.5e-18	83.61	DNA helicase OS=Cucumis melo OX=3656 GN=LOC103490357 PE=3 SV=1	[more]
tr\|A0A0A0K5P7\|A0A0A0K5P7_CUCSA	7.2e-18	81.97	DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_7G004140 PE=3 SV=1	[more]
tr\|B9RHA7\|B9RHA7_RICCO	5.7e-15	70.49	DNA helicase OS=Ricinus communis OX=3988 GN=RCOM_1449150 PE=3 SV=1	[more]
tr\|A0A2I4G8U9\|A0A2I4G8U9_9ROSI	7.4e-15	75.41	DNA helicase OS=Juglans regia OX=51240 GN=LOC109005731 PE=3 SV=1	[more]

BLAST of Bhi12G001211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448069.1	3.7e-18	83.61	PREDICTED: DNA replication licensing factor MCM4 isoform X1 [Cucumis melo]	[more]
XP_008448070.1	3.7e-18	83.61	PREDICTED: DNA replication licensing factor MCM4 isoform X2 [Cucumis melo]	[more]
XP_022925017.1	6.4e-18	81.97	DNA replication licensing factor MCM4-like [Cucurbita moschata]	[more]
XP_004148531.1	1.1e-17	81.97	PREDICTED: DNA replication licensing factor MCM4 [Cucumis sativus] >KGN43161.1 h...	[more]
XP_022969442.1	1.4e-17	81.97	DNA replication licensing factor MCM4 isoform X1 [Cucurbita maxima] >XP_02296944...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006271	DNA strand elongation involved in DNA replication
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0000727	double-strand break repair via break-induced replication
biological_process	GO:1902975	mitotic DNA replication initiation
biological_process	GO:0006267	pre-replicative complex assembly involved in nuclear cell cycle DNA replication
cellular_component	GO:0042555	MCM complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001211	Bhi12M001211	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001211	Cucurbita maxima (Rimu)	cmawgoB0378
Bhi12G001211	Cucurbita moschata (Rifu)	cmowgoB0372
Bhi12G001211	Cucurbita pepo (Zucchini)	cpewgoB0223
Bhi12G001211	Bottle gourd (USVL1VR-Ls)	lsiwgoB007
Bhi12G001211	Melon (DHL92) v3.6.1	medwgoB448
Bhi12G001211	Melon (DHL92) v3.5.1	mewgoB445
Bhi12G001211	Watermelon (Charleston Gray)	wcgwgoB503
Bhi12G001211	Watermelon (97103) v2	wgowmbB097
Bhi12G001211	Watermelon (97103) v1	wgowmB106
Bhi12G001211	Silver-seed gourd	carwgoB0874