Bhi12G001186 (gene) Wax gourd

Overview
NameBhi12G001186
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionRetrotransposable element Tf2
Locationchr12 : 44101867 .. 44102139 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTCACTTACAAGCGCCTCACTAATGCCGAACTGCAATCAAGAAGAGAGGAAGGCCTCTATTTTCGGTGTGAGGAAAAGGATAGTGTCGGTCACTGTTGTAAAAGCAAGGAATTGAGAGTTATGGTGGTTCGTGAAGACGAGAAGACTGAAGAGATGGAGTGGGAAGGGGAAGCTGTTGAAAATGAGACAATTGAAGTAGGTGAAGTGGTCAAACTATCGTTAAATATGGTAGTGGGCATCTCAACTCCATGGACCTTGAAACTATGA

mRNA sequence

ATGAAGGTCACTTACAAGCGCCTCACTAATGCCGAACTGCAATCAAGAAGAGAGGAAGGCCTCTATTTTCGGTGTGAGGAAAAGGATAGTGTCGGTCACTGTTGTAAAAGCAAGGAATTGAGAGTTATGGTGGTTCGTGAAGACGAGAAGACTGAAGAGATGGAGTGGGAAGGGGAAGCTGTTGAAAATGAGACAATTGAAGTAGGTGAAGTGGTCAAACTATCGTTAAATATGGTAGTGGGCATCTCAACTCCATGGACCTTGAAACTATGA

Coding sequence (CDS)

ATGAAGGTCACTTACAAGCGCCTCACTAATGCCGAACTGCAATCAAGAAGAGAGGAAGGCCTCTATTTTCGGTGTGAGGAAAAGGATAGTGTCGGTCACTGTTGTAAAAGCAAGGAATTGAGAGTTATGGTGGTTCGTGAAGACGAGAAGACTGAAGAGATGGAGTGGGAAGGGGAAGCTGTTGAAAATGAGACAATTGAAGTAGGTGAAGTGGTCAAACTATCGTTAAATATGGTAGTGGGCATCTCAACTCCATGGACCTTGAAACTATGA

Protein sequence

MKVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAVENETIEVGEVVKLSLNMVVGISTPWTLKL
Homology
[Close]
BLAST of Bhi12G001186 vs. TrEMBL
Match: tr|A5B2I6|A5B2I6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 47/90 (52.22%), Postives = 69/90 (76.67%), Query Frame = 0 

Query: 2    KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAV 61
            ++  KRLT +ELQ+RRE+GL+F+CEEK S GH CK KELRV++V EDE+ ++ +++  A 
Sbjct: 973  EIPIKRLTESELQARREKGLWFKCEEKFSPGHRCK-KELRVLLVHEDEEEDDNQFDDRAT 1032

Query: 62   ENET-IEVGEVVKLSLNMVVGISTPWTLKL 91
            E    IE+ + V+LSLN VVG++TP T+K+
Sbjct: 1033 EEPALIELKDAVELSLNSVVGLTTPGTMKI 1061

[Close]
BLAST of Bhi12G001186 vs. TrEMBL
Match: tr|A5BCT4|A5BCT4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003157 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.7e-14
Identity = 45/90 (50.00%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 2   KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEA- 61
           ++  KRLT +ELQ+RRE+G+ F+C+EK S+GH CK KELRV++V EDE+ E+ +++  A 
Sbjct: 175 EIPIKRLTESELQARREKGICFKCDEKFSLGHRCK-KELRVLLVHEDEREEDNQFDERAT 234

Query: 62  VENETIEVGEVVKLSLNMVVGISTPWTLKL 91
           +E   IE+ + ++LSLN VVG++TP T+K+
Sbjct: 235 MEPSLIELKDAMELSLNSVVGLTTPGTMKI 263

[Close]
BLAST of Bhi12G001186 vs. TrEMBL
Match: tr|A0A087HDI2|A0A087HDI2_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G341400 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 1   MKVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEA 60
           ++  ++R+T  E+  R+  GL FRC+EK SV H C   ELRV+VV+ D    E EWE + 
Sbjct: 314 LRPPFRRITMTEIAHRKAAGLCFRCDEKWSVRHVCPKAELRVLVVQPD--GSEKEWEPKK 373

Query: 61  VENETIEVGEVVK---LSLNMVVGISTPWTLKL 91
            E+E +EV +  K   LSLN +VGIS+P T+K+
Sbjct: 374 EEDEVVEVQDTAKFAALSLNSLVGISSPRTMKM 404

[Close]
BLAST of Bhi12G001186 vs. TrEMBL
Match: tr|A0A087G291|A0A087G291_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 5   YKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAVENE 64
           Y++LT AE++ R+ EG+ FRC+EK      C  KE  V++V++D    E+EWE E  E +
Sbjct: 321 YRKLTQAEIEWRKAEGMCFRCDEKGHSRSQCPHKEYAVLIVQDD--GSEIEWEDEGGEEK 380

Query: 65  ---TIEVGEVVKLSLNMVVGISTPWTLKL 91
               ++  EV +LSLN +VGIS+P T+KL
Sbjct: 381 IEAILDTAEVAELSLNSMVGISSPRTVKL 407

[Close]
BLAST of Bhi12G001186 vs. TrEMBL
Match: tr|A0A087G289|A0A087G289_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs48021U000700 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 5   YKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAVENE 64
           Y++LT AE++ R+ EG+ FRC+EK      C  KE  V++V++D    E+EWE E  E +
Sbjct: 239 YRKLTQAEIEWRKAEGMCFRCDEKGHSRSQCPHKEYAVLIVQDD--GSEIEWEDEGGEEK 298

Query: 65  ---TIEVGEVVKLSLNMVVGISTPWTLKL 91
               ++  EV +LSLN +VGIS+P T+KL
Sbjct: 299 IEAILDTAEVAELSLNSMVGISSPRTVKL 325

[Close]
BLAST of Bhi12G001186 vs. NCBI nr
Match: XP_019081243.1 (PREDICTED: uncharacterized protein LOC109124086 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 9.1e-15
Identity = 47/90 (52.22%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 2   KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAV 61
           ++  KRLT +ELQ+RRE+GL F+C+EK S GH CK KELRV++VREDE+ E+ +++G A 
Sbjct: 82  EILIKRLTESELQARREKGLCFKCDEKFSTGHRCK-KELRVLLVREDEEEEDNQYDGRAT 141

Query: 62  ENET-IEVGEVVKLSLNMVVGISTPWTLKL 91
           E  + +E+ + V+LSLN VVG++T  T+K+
Sbjct: 142 EEPSLVELKDAVELSLNSVVGLTTSGTMKI 170

[Close]
BLAST of Bhi12G001186 vs. NCBI nr
Match: CAN78588.1 (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 47/90 (52.22%), Postives = 69/90 (76.67%), Query Frame = 0 

Query: 2    KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAV 61
            ++  KRLT +ELQ+RRE+GL+F+CEEK S GH CK KELRV++V EDE+ ++ +++  A 
Sbjct: 973  EIPIKRLTESELQARREKGLWFKCEEKFSPGHRCK-KELRVLLVHEDEEEDDNQFDDRAT 1032

Query: 62   ENET-IEVGEVVKLSLNMVVGISTPWTLKL 91
            E    IE+ + V+LSLN VVG++TP T+K+
Sbjct: 1033 EEPALIELKDAVELSLNSVVGLTTPGTMKI 1061

[Close]
BLAST of Bhi12G001186 vs. NCBI nr
Match: CAN65491.1 (hypothetical protein VITISV_003157 [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/90 (50.00%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 2   KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEA- 61
           ++  KRLT +ELQ+RRE+G+ F+C+EK S+GH CK KELRV++V EDE+ E+ +++  A 
Sbjct: 175 EIPIKRLTESELQARREKGICFKCDEKFSLGHRCK-KELRVLLVHEDEREEDNQFDERAT 234

Query: 62  VENETIEVGEVVKLSLNMVVGISTPWTLKL 91
           +E   IE+ + ++LSLN VVG++TP T+K+
Sbjct: 235 MEPSLIELKDAMELSLNSVVGLTTPGTMKI 263

[Close]
BLAST of Bhi12G001186 vs. NCBI nr
Match: XP_019056647.1 (PREDICTED: uncharacterized protein LOC104801738 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 2   KVTYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKT-EEMEWEGEA 61
           K T+KR+++AE + +R++GL FRC+EK  VGH CK KEL+V++  E  +T EE++ E + 
Sbjct: 109 KSTFKRMSDAEFEEKRKKGLCFRCDEKFFVGHRCKQKELQVILAEEVMETGEELKEEQDN 168

Query: 62  VENETIEVGEVVKLSLNMVVGISTPWTLKL 91
            E    E GE  +LSLN VVG+++P TLK+
Sbjct: 169 EEGNMEEEGEFAELSLNSVVGLTSPKTLKI 198

[Close]
BLAST of Bhi12G001186 vs. NCBI nr
Match: XP_022848903.1 (uncharacterized protein LOC111371244 [Olea europaea var. sylvestris])

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 43/87 (49.43%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 4   TYKRLTNAELQSRREEGLYFRCEEKDSVGHCCKSKELRVMVVREDEKTEEMEWEGEAVEN 63
           ++K+L++ ELQ +RE GL +RC+EK   GH C++KEL V+VV+ +E+ EE+    +  E 
Sbjct: 321 SFKKLSDVELQLKRERGLCYRCDEKFQPGHKCRNKELHVLVVQGEEEGEEL-GNVQVDEG 380

Query: 64  ETIEVGEVVKLSLNMVVGISTPWTLKL 91
           ET EVGEVV+LS+N VVG++ P ++KL
Sbjct: 381 ET-EVGEVVELSINSVVGLNAPKSMKL 405

The following BLAST results are available for this feature:
BLAST of Bhi12G001186 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G001186 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G001186 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5B2I6|A5B2I6_VITVI1.3e-1452.22Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1[more]
tr|A5BCT4|A5BCT4_VITVI8.7e-1450.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003157 PE=4 SV=1[more]
tr|A0A087HDI2|A0A087HDI2_ARAAL2.6e-1045.16Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G341400 PE=4 SV=1[more]
tr|A0A087G291|A0A087G291_ARAAL4.9e-0943.82Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs48021U000700 PE=4 S... [more]
tr|A0A087G289|A0A087G289_ARAAL4.9e-0943.82Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs48021U000700 PE=4 S... [more]
BLAST of Bhi12G001186 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_019081243.19.1e-1552.22PREDICTED: uncharacterized protein LOC109124086 [Vitis vinifera][more]
CAN78588.12.0e-1452.22hypothetical protein VITISV_043911 [Vitis vinifera][more]
CAN65491.11.3e-1350.00hypothetical protein VITISV_003157 [Vitis vinifera][more]
XP_019056647.11.6e-1147.78PREDICTED: uncharacterized protein LOC104801738 isoform X1 [Tarenaya hassleriana... [more]
XP_022848903.12.1e-1149.43uncharacterized protein LOC111371244 [Olea europaea var. sylvestris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001186Bhi12M001186mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi12G001186ClCG06G009770Watermelon (Charleston Gray)wcgwgoB497
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None