Bhi12G001160 (gene) Wax gourd

Overview
NameBhi12G001160
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionCytochrome C assembly protein
Locationchr12 : 41866969 .. 41867250 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTCCGGGTAGGAAGAAAGGAATTGAACCCAGATAAAGCCTGTTACCAGTTGCCAGAAGAATTGTCAACAAAAGAAGAAGCAGTGGTCTTTGACCAGGACCAGGAACCAATTCGAATTTGGATCTGGGGCAAATTTTGGGTGTGGGATGCTCGTTTAACCTATGTATTCATCTCGTTCCTTATTTACCTGGGTGCTCCATTCATCCGACCAGGGGTGTGGATAACGAGGCCACCTTCACAACCTTCTCCCTTCTATCCCTATGGTGTAGTAAGGTAG

mRNA sequence

ATGCTGGTCCGGGTAGGAAGAAAGGAATTGAACCCAGATAAAGCCTGTTACCAGTTGCCAGAAGAATTGTCAACAAAAGAAGAAGCAGTGGTCTTTGACCAGGACCAGGAACCAATTCGAATTTGGATCTGGGGCAAATTTTGGGTGTGGGATGCTCGTTTAACCTATGTATTCATCTCGTTCCTTATTTACCTGGGTGCTCCATTCATCCGACCAGGGGTGTGGATAACGAGGCCACCTTCACAACCTTCTCCCTTCTATCCCTATGGTGTAGTAAGGTAG

Coding sequence (CDS)

ATGCTGGTCCGGGTAGGAAGAAAGGAATTGAACCCAGATAAAGCCTGTTACCAGTTGCCAGAAGAATTGTCAACAAAAGAAGAAGCAGTGGTCTTTGACCAGGACCAGGAACCAATTCGAATTTGGATCTGGGGCAAATTTTGGGTGTGGGATGCTCGTTTAACCTATGTATTCATCTCGTTCCTTATTTACCTGGGTGCTCCATTCATCCGACCAGGGGTGTGGATAACGAGGCCACCTTCACAACCTTCTCCCTTCTATCCCTATGGTGTAGTAAGGTAG

Protein sequence

MLVRVGRKELNPDKACYQLPEELSTKEEAVVFDQDQEPIRIWIWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSPFYPYGVVR
Homology
[Close]
BLAST of Bhi12G001160 vs. Swiss-Prot
Match: sp|P92527|CCMC_ARATH (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 47.8 bits (112), Expect = 7.9e-05
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGA 68
           +WG FWVWDARLT VFI F IYLGA
Sbjct: 115 MWGTFWVWDARLTSVFILFFIYLGA 139

[Close]
BLAST of Bhi12G001160 vs. Swiss-Prot
Match: sp|P38453|CCMC_MARPO (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-04
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGA 68
           +WG FWVWDARLT V I F IYLGA
Sbjct: 115 MWGTFWVWDARLTSVLILFFIYLGA 139

[Close]
BLAST of Bhi12G001160 vs. TAIR10
Match: AT2G07681.1 (Cytochrome C assembly protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGA 68
           +WG FWVWDARLT VFISFLIYLGA
Sbjct: 495 MWGTFWVWDARLTSVFISFLIYLGA 519

[Close]
BLAST of Bhi12G001160 vs. TAIR10
Match: AT2G07771.2 (Cytochrome C assembly protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGA 68
           +WG FWVWDARLT VFISFLIYLGA
Sbjct: 115 MWGTFWVWDARLTSVFISFLIYLGA 139

[Close]
BLAST of Bhi12G001160 vs. TAIR10
Match: ATMG00900.1 (cytochrome C biogenesis 256)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGA 68
           +WG FWVWDARLT VFISFLIYLGA
Sbjct: 115 MWGTFWVWDARLTSVFISFLIYLGA 139

[Close]
BLAST of Bhi12G001160 vs. TrEMBL
Match: tr|A0A151RF24|A0A151RF24_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_037654 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.8e-05
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 43 IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSPF 87
          +WG FWVWDARLT+VFISFLIYLGA      +   + P +P+PF
Sbjct: 1  MWGTFWVWDARLTFVFISFLIYLGA------LRFQKLPVEPAPF 38

[Close]
BLAST of Bhi12G001160 vs. TrEMBL
Match: tr|A0A1D6YXY4|A0A1D6YXY4_9LAMI (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Castilleja paramensis OX=1857654 GN=ccmC PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIYLGA F +      + P +P+P
Sbjct: 104 MWGTFWVWDARLTSVFISFLIYLGALFFQ------KLPVEPAP 140

[Close]
BLAST of Bhi12G001160 vs. TrEMBL
Match: tr|A0A141BUH2|A0A141BUH2_9LAMI (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Neobartsia pedicularoides OX=691774 GN=ccmC PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIY+GA F +      + P +P+P
Sbjct: 213 MWGTFWVWDARLTSVFISFLIYIGALFFQ------KLPVEPAP 249

[Close]
BLAST of Bhi12G001160 vs. TrEMBL
Match: tr|W1P966|W1P966_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00003p00271410 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 43 IWGKFWVWDARLTYVFISFLIYLGA 68
          +WG FWVWDARLT+VFISFLIYLGA
Sbjct: 63 MWGTFWVWDARLTFVFISFLIYLGA 87

[Close]
BLAST of Bhi12G001160 vs. TrEMBL
Match: tr|R4QVP7|R4QVP7_UTRGI (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Utricularia gibba OX=13748 GN=ccmC PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIYLGA      ++  + P +P+P
Sbjct: 104 MWGTFWVWDARLTSVFISFLIYLGA------LYFQKLPVEPAP 140

[Close]
BLAST of Bhi12G001160 vs. NCBI nr
Match: KYP41005.1 (hypothetical protein KK1_037654 [Cajanus cajan])

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 43 IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSPF 87
          +WG FWVWDARLT+VFISFLIYLGA      +   + P +P+PF
Sbjct: 1  MWGTFWVWDARLTFVFISFLIYLGA------LRFQKLPVEPAPF 38

[Close]
BLAST of Bhi12G001160 vs. NCBI nr
Match: YP_009316402.1 (cytochrome c maturase subunit C (mitochondrion) [Castilleja paramensis] >ANJ04362.1 cytochrome c maturase subunit C (mitochondrion) [Castilleja paramensis])

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIYLGA F +      + P +P+P
Sbjct: 104 MWGTFWVWDARLTSVFISFLIYLGALFFQ------KLPVEPAP 140

[Close]
BLAST of Bhi12G001160 vs. NCBI nr
Match: AGL75407.1 (cytochrome c biogenesis C (mitochondrion) [Utricularia gibba])

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIYLGA      ++  + P +P+P
Sbjct: 104 MWGTFWVWDARLTSVFISFLIYLGA------LYFQKLPVEPAP 140

[Close]
BLAST of Bhi12G001160 vs. NCBI nr
Match: ERN03535.1 (hypothetical protein AMTR_s00003p00271410 [Amborella trichopoda])

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 43 IWGKFWVWDARLTYVFISFLIYLGA 68
          +WG FWVWDARLT+VFISFLIYLGA
Sbjct: 63 MWGTFWVWDARLTFVFISFLIYLGA 87

[Close]
BLAST of Bhi12G001160 vs. NCBI nr
Match: AKQ51030.1 (Cytochrome c maturation subunit C (mitochondrion) [Neobartsia pedicularoides])

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 43  IWGKFWVWDARLTYVFISFLIYLGAPFIRPGVWITRPPSQPSP 86
           +WG FWVWDARLT VFISFLIY+GA F +      + P +P+P
Sbjct: 213 MWGTFWVWDARLTSVFISFLIYIGALFFQ------KLPVEPAP 249

The following BLAST results are available for this feature:
BLAST of Bhi12G001160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P92527|CCMC_ARATH7.9e-0580.00Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi... [more]
sp|P38453|CCMC_MARPO3.9e-0476.00Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia... [more]
BLAST of Bhi12G001160 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07681.13.0e-0788.00Cytochrome C assembly protein[more]
AT2G07771.23.0e-0788.00Cytochrome C assembly protein[more]
ATMG00900.13.0e-0788.00cytochrome C biogenesis 256[more]
BLAST of Bhi12G001160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A151RF24|A0A151RF24_CAJCA5.8e-0559.09Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_037654 PE=4 SV=1[more]
tr|A0A1D6YXY4|A0A1D6YXY4_9LAMI1.7e-0460.47Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Castilleja... [more]
tr|A0A141BUH2|A0A141BUH2_9LAMI2.9e-0458.14Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Neobartsia... [more]
tr|W1P966|W1P966_AMBTC2.9e-0488.00Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00003p00271410... [more]
tr|R4QVP7|R4QVP7_UTRGI2.9e-0458.14Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Utriculari... [more]
BLAST of Bhi12G001160 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP41005.18.8e-0559.09hypothetical protein KK1_037654 [Cajanus cajan][more]
YP_009316402.12.6e-0460.47cytochrome c maturase subunit C (mitochondrion) [Castilleja paramensis] >ANJ0436... [more]
AGL75407.14.4e-0458.14cytochrome c biogenesis C (mitochondrion) [Utricularia gibba][more]
ERN03535.14.4e-0488.00hypothetical protein AMTR_s00003p00271410 [Amborella trichopoda][more]
AKQ51030.14.4e-0458.14Cytochrome c maturation subunit C (mitochondrion) [Neobartsia pedicularoides][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001160Bhi12M001160mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G001160Cucumber (Gy14) v1cgywgoB496
Bhi12G001160Wild cucumber (PI 183967)cpiwgoB455
Bhi12G001160Cucumber (Chinese Long) v3cucwgoB463
Bhi12G001160Cucumber (Chinese Long) v2cuwgoB452
Bhi12G001160Bottle gourd (USVL1VR-Ls)lsiwgoB030
Bhi12G001160Melon (DHL92) v3.6.1medwgoB012
Bhi12G001160Watermelon (Charleston Gray)wcgwgoB326
Bhi12G001160Watermelon (97103) v2wgowmbB070