Bhi12G001078 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001078
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	p-loop NTPase domain-containing protein LPA1 homolog 1-like
Location	chr12 : 37792845 .. 37793242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGGTAGGTTGAAAAATTATTTTAATTTTCTAAAGAACTTGGCTATTTCTTCTATTAGAAGTATATTTTCTCTTGATCTATTTCTTACCAATACACCGTGTTTAGTAGCTAGACCCGTATATGCAGAGCATGTACATCTTTTTATTTTCTTAAATTTATTTTCTTCAATGTTATCTTGTCTCTTTGGTTCCAGATGACAATTCATGTTTAGAATCCGATGGCCTATTATTCTCTTTCAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

mRNA sequence

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

Coding sequence (CDS)

ATGCGTTTTGTAACCAGGGAAGAATCCAGGGCAGATGGGACTGATACTAGTAAATACCCATCTTCTTACTATAGCTCTCCAAGGTTTTCCGATGGACCTTCCAAGGAGCTCAAGGAAGATATCTCAGTCCATGGTAGCGATGAAGAGGTTGATGATCCTTAA

Protein sequence

MRFVTREESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP

Homology

[Close]

BLAST of Bhi12G001078 vs. Swiss-Prot
Match: sp|Q9FJH9|LPAH1_ARATH (P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g60760 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDE 49
           ++ +AD  +T S+Y SS  SSPR S+G SKELKED SVHGSDE
Sbjct: 550 DDCKADMAETSSRYYSSCCSSPRMSEGTSKELKEDQSVHGSDE 592

[Close]

BLAST of Bhi12G001078 vs. Swiss-Prot
Match: sp|B9F4I8|LPA1_ORYSJ (P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 6.5e-04
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKE-DISVHGSDEEVDDP 54
           ++ RADG +T  +Y SS  SSP+ SD PSKEL E D SV GS+E+ DDP
Sbjct: 556 DDLRADGIETGGRYYSSCCSSPKVSDCPSKELMEDDYSVFGSEEDADDP 604

[Close]

BLAST of Bhi12G001078 vs. TAIR10
Match: AT5G60760.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 5.5e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDE 49
           ++ +AD  +T S+Y SS  SSPR S+G SKELKED SVHGSDE
Sbjct: 550 DDCKADMAETSSRYYSSCCSSPRMSEGTSKELKEDQSVHGSDE 592

[Close]

BLAST of Bhi12G001078 vs. TrEMBL
Match: tr|A0A1S3CNQ1|A0A1S3CNQ1_CUCME (p-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Cucumis melo OX=3656 GN=LOC103502999 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. TrEMBL
Match: tr|A0A0A0KGH7|A0A0A0KGH7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147540 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. TrEMBL
Match: tr|A0A2I4E7N9|A0A2I4E7N9_9ROSI (P-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Juglans regia OX=51240 GN=LOC108987031 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDT S+Y SS  SSPR SDGPSKELKE++SVHGSDEEVDDP
Sbjct: 533 DESRADGTDTGSRYLSSCCSSPRMSDGPSKELKEELSVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. TrEMBL
Match: tr|A0A059D4W1|A0A059D4W1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02534 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDT SKY SS  SSPR SDGP+KELKED SVHGSDEE DDP
Sbjct: 532 DESRADGTDTGSKYYSSCCSSPRISDGPAKELKEDHSVHGSDEEADDP 579

[Close]

BLAST of Bhi12G001078 vs. TrEMBL
Match: tr|A0A2K3NL45|A0A2K3NL45_TRIPR (2-phosphoglycerate kinase OS=Trifolium pratense OX=57577 GN=L195_g000167 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 7   EESRADGTDT-SKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDD 53
           +ES+ADGTDT S+Y SS  SSPR SDGPSKELKED+SVHGSDEE+DD
Sbjct: 551 DESKADGTDTGSRYVSSCCSSPRMSDGPSKELKEDLSVHGSDEEIDD 597

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_008465362.1 (PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_011657017.1 (PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1 [Cucumis sativus] >KGN46861.1 hypothetical protein Csa_6G147540 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ES+ADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEEVDDP
Sbjct: 534 DESKADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEVDDP 580

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_022958671.1 (P-loop NTPase domain-containing protein LPA1 homolog 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEE DDP
Sbjct: 534 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEADDP 580

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_022958672.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEE DDP
Sbjct: 418 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEADDP 464

[Close]

BLAST of Bhi12G001078 vs. NCBI nr
Match: XP_022996161.1 (P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 7   EESRADGTDTSKYPSSYYSSPRFSDGPSKELKEDISVHGSDEEVDDP 54
           +ESRADGTDTSKY SS  SSPRFSDGPSKELKEDISVHGSDEE DDP
Sbjct: 419 DESRADGTDTSKYLSSCCSSPRFSDGPSKELKEDISVHGSDEEADDP 465

The following BLAST results are available for this feature:

BLAST of Bhi12G001078 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJH9\|LPAH1_ARATH	1.0e-04	62.79	P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana O...	[more]
sp\|B9F4I8\|LPA1_ORYSJ	6.5e-04	57.14	P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of Bhi12G001078 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60760.1	5.5e-06	62.79	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Bhi12G001078 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNQ1\|A0A1S3CNQ1_CUCME	7.4e-13	89.36	p-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Cucumis melo OX=3...	[more]
tr\|A0A0A0KGH7\|A0A0A0KGH7_CUCSA	7.4e-13	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147540 PE=4 SV=1	[more]
tr\|A0A2I4E7N9\|A0A2I4E7N9_9ROSI	4.5e-10	81.25	P-loop NTPase domain-containing protein LPA1 homolog 1-like OS=Juglans regia OX=...	[more]
tr\|A0A059D4W1\|A0A059D4W1_EUCGR	1.7e-09	81.25	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02534 PE=4 SV...	[more]
tr\|A0A2K3NL45\|A0A2K3NL45_TRIPR	1.7e-09	78.72	2-phosphoglycerate kinase OS=Trifolium pratense OX=57577 GN=L195_g000167 PE=4 SV...	[more]

BLAST of Bhi12G001078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465362.1	1.1e-12	89.36	PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1-like [Cucumis ...	[more]
XP_011657017.1	1.1e-12	89.36	PREDICTED: P-loop NTPase domain-containing protein LPA1 homolog 1 [Cucumis sativ...	[more]
XP_022958671.1	1.5e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 2-like isoform X1 [Cucurbit...	[more]
XP_022958672.1	1.5e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbit...	[more]
XP_022996161.1	1.5e-12	89.36	P-loop NTPase domain-containing protein LPA1 homolog 1-like isoform X2 [Cucurbit...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001078	Bhi12M001078	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..29

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001078	Cucumber (Gy14) v1	cgywgoB009
Bhi12G001078	Cucumber (Gy14) v2	cgybwgoB428
Bhi12G001078	Cucurbita maxima (Rimu)	cmawgoB0373
Bhi12G001078	Cucurbita maxima (Rimu)	cmawgoB0827
Bhi12G001078	Cucurbita moschata (Rifu)	cmowgoB0367
Bhi12G001078	Cucurbita moschata (Rifu)	cmowgoB0822
Bhi12G001078	Cucurbita pepo (Zucchini)	cpewgoB0218
Bhi12G001078	Cucurbita pepo (Zucchini)	cpewgoB0490
Bhi12G001078	Wild cucumber (PI 183967)	cpiwgoB455
Bhi12G001078	Cucumber (Chinese Long) v3	cucwgoB463
Bhi12G001078	Cucumber (Chinese Long) v2	cuwgoB452
Bhi12G001078	Bottle gourd (USVL1VR-Ls)	lsiwgoB009
Bhi12G001078	Melon (DHL92) v3.6.1	medwgoB012
Bhi12G001078	Melon (DHL92) v3.5.1	mewgoB015
Bhi12G001078	Watermelon (Charleston Gray)	wcgwgoB326
Bhi12G001078	Watermelon (97103) v2	wgowmbB070
Bhi12G001078	Watermelon (97103) v1	wgowmB058
Bhi12G001078	Silver-seed gourd	carwgoB0637
Bhi12G001078	Silver-seed gourd	carwgoB0962