Bhi12G000988 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G000988
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	TRAF-like family protein
Location	chr12 : 34023565 .. 34023731 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATAGAACTATATCCTAGAGGAGACTCTTTGGCCATGACTGGCTATATGTCCATGTTCTTGAGGTTTGATAGTTTCGAGAAGCTTCCACAAGGTTCTAGAGTTTACGTTGAATATGATATAGCTGTACTGAGTCAACTTGGAGGTGCGTACACAAATTATCCAG

mRNA sequence

GAAAATAGAACTATATCCTAGAGGAGACTCTTTGGCCATGACTGGCTATATGTCCATGTTCTTGAGGTTTGATAGTTTCGAGAAGCTTCCACAAGGTTCTAGAGTTTACGTTGAATATGATATAGCTGTACTGAGTCAACTTGGAGGTGCGTACACAAATTATCCAG

Coding sequence (CDS)

GAAAATAGAACTATATCCTAGAGGAGACTCTTTGGCCATGACTGGCTATATGTCCATGTTCTTGAGGTTTGATAGTTTCGAGAAGCTTCCACAAGGTTCTAGAGTTTACGTTGAATATGATATAGCTGTACTGAGTCAACTTGGAGGTGCGTACACAAATTATCCAG

Protein sequence

KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQLGGAYTNYP

Homology

[Close]

BLAST of Bhi12G000988 vs. TAIR10
Match: AT3G17380.1 (TRAF-like family protein)

HSP 1 Score: 39.3 bits (90), Expect = 9.2e-04
Identity = 16/51 (31.37%), Postives = 28/51 (54.90%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQLGGAY 52
           KIE YP G       ++S++L     E +  G++++VE+ I +  QL G +
Sbjct: 204 KIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQGRH 254

[Close]

BLAST of Bhi12G000988 vs. TrEMBL
Match: tr|A0A0A0KND8|A0A0A0KND8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-06
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQL 48
           KI L+P GD  A  G+ SM+L   + ++ PQG++VYVEY++AVLSQL
Sbjct: 226 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQL 272

[Close]

BLAST of Bhi12G000988 vs. TrEMBL
Match: tr|A0A1S3CQ20|A0A1S3CQ20_CUCME (uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQL 48
           KI L+P GD  A  G+ SM+L   +    P+G++VYVEY++AVLSQL
Sbjct: 231 KIRLFPSGDWQAKPGFFSMYLMLSNLIAHPKGAQVYVEYEMAVLSQL 277

[Close]

BLAST of Bhi12G000988 vs. NCBI nr
Match: XP_022146383.1 (uncharacterized protein LOC111015611 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-07
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQLG 49
           ++EL+P G   AM+ Y+S+FL FD   +LP  S+VYVEY++AVLSQ+G
Sbjct: 231 RVELHPNGCPTAMSNYLSLFLIFDDLRELPDDSQVYVEYEMAVLSQVG 278

[Close]

BLAST of Bhi12G000988 vs. NCBI nr
Match: XP_022146379.1 (ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 27/48 (56.25%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQLG 49
           K+ LYP+G S A TG++S++L  DS +++ QGS+VYVEY++A+LSQLG
Sbjct: 179 KLWLYPKGCSNAETGFLSLYLILDSSKEILQGSKVYVEYELALLSQLG 226

[Close]

BLAST of Bhi12G000988 vs. NCBI nr
Match: XP_022146382.1 (uncharacterized protein LOC111015610 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQ 47
           K+ LYP+G   A   Y+S+FLR +S ++LPQG RVY E++IAVLS+
Sbjct: 235 KMSLYPKGSPKASPDYLSLFLRCESLKELPQGCRVYAEFEIAVLSK 280

[Close]

BLAST of Bhi12G000988 vs. NCBI nr
Match: KGN51088.1 (hypothetical protein Csa_5G432550 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQL 48
           KI L+P GD  A  G+ SM+L   + ++ PQG++VYVEY++AVLSQL
Sbjct: 226 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQL 272

[Close]

BLAST of Bhi12G000988 vs. NCBI nr
Match: XP_011656221.1 (PREDICTED: uncharacterized protein LOC105435677 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   KIELYPRGDSLAMTGYMSMFLRFDSFEKLPQGSRVYVEYDIAVLSQL 48
           KI L+P GD  A  G+ SM+L   + ++ PQG++VYVEY++AVLSQL
Sbjct: 226 KIRLFPSGDLQAKPGFFSMYLMLTNLKEFPQGAQVYVEYEMAVLSQL 272

The following BLAST results are available for this feature:

BLAST of Bhi12G000988 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi12G000988 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17380.1	9.2e-04	31.37	TRAF-like family protein	[more]

BLAST of Bhi12G000988 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KND8\|A0A0A0KND8_CUCSA	7.0e-06	53.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1	[more]
tr\|A0A1S3CQ20\|A0A1S3CQ20_CUCME	2.2e-04	51.06	uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=...	[more]

BLAST of Bhi12G000988 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146383.1	9.5e-07	54.17	uncharacterized protein LOC111015611 [Momordica charantia]	[more]
XP_022146379.1	1.2e-06	56.25	ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia]	[more]
XP_022146382.1	8.1e-06	54.35	uncharacterized protein LOC111015610 [Momordica charantia]	[more]
KGN51088.1	1.1e-05	53.19	hypothetical protein Csa_5G432550 [Cucumis sativus]	[more]
XP_011656221.1	1.1e-05	53.19	PREDICTED: uncharacterized protein LOC105435677 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002083	MATH/TRAF_dom
IPR008974	TRAF-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000988	Bhi12M000988	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	G3DSA:2.60.210.10		coord: 1..54 e-value: 2.7E-6 score: 29.4
IPR008974	TRAF-like	SUPERFAMILY	SSF49599	TRAF domain-like	coord: 2..51
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 1..55 score: 8.987
IPR002083	MATH/TRAF domain	CDD	cd00121	MATH	coord: 1..49 e-value: 2.07449E-7 score: 41.9811

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G000988	Watermelon (Charleston Gray)	wcgwgoB194
Bhi12G000988	Watermelon (97103) v2	wgowmbB057
Bhi12G000988	Silver-seed gourd	carwgoB0580
Bhi12G000988	Silver-seed gourd	carwgoB0962
Bhi12G000988	Cucurbita maxima (Rimu)	cmawgoB0827
Bhi12G000988	Cucurbita moschata (Rifu)	cmowgoB0822
Bhi12G000988	Cucurbita pepo (Zucchini)	cpewgoB0218
Bhi12G000988	Cucurbita pepo (Zucchini)	cpewgoB0490