Bhi12G000673 (gene) Wax gourd

Overview
NameBhi12G000673
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr12 : 23018520 .. 23018749 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAAGTCCCCCACTTTCATTACATCGATGTGGATTGCCTCGCAAAATCGCAATAGAGCTTTTCCAAACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGA

mRNA sequence

GCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAAGTCCCCCACTTTCATTACATCGATGTGGATTGCCTCGCAAAATCGCAATAGAGCTTTTCCAAACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGA

Coding sequence (CDS)

GCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAAGTCCCCCACTTTCATTACATCGATGTGGATTGCCTCGCAAAATCGCAATAGAGCTTTTCCAAACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGA

Protein sequence

KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIV
Homology
[Close]
BLAST of Bhi12G000673 vs. Swiss-Prot
Match: sp|Q4VZP2|RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-34
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. Swiss-Prot
Match: sp|Q09X26|RPOC1_MORIN (DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.5e-34
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTF+IRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEP+V
Sbjct: 423 IGVAKSKIREKEPVV 437

[Close]
BLAST of Bhi12G000673 vs. Swiss-Prot
Match: sp|Q8HVY4|RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-33
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIR+HFASN
Sbjct: 365 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASN 424

Query: 61  IGVAKSKIREKEPIV 76
           IG+AKSKIREKEPIV
Sbjct: 425 IGIAKSKIREKEPIV 439

[Close]
BLAST of Bhi12G000673 vs. Swiss-Prot
Match: sp|Q8S8Y0|RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTF+IRGLIRQH ASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. Swiss-Prot
Match: sp|A7Y3B6|RPOC1_IPOPU (DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea OX=4121 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTF+IRGLIRQH ASN
Sbjct: 370 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASN 429

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 430 IGVAKSKIREKEPIV 444

[Close]
BLAST of Bhi12G000673 vs. TAIR10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-33
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTF+IRGLIRQH ASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKS+IREK+PIV
Sbjct: 423 IGVAKSQIREKKPIV 437

[Close]
BLAST of Bhi12G000673 vs. TAIR10
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 47.8 bits (112), Expect = 3.5e-06
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIEL 44
           KEGR R  L+GKRVD+S R+VI   P +++   G+P  IA+ L
Sbjct: 343 KEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNL 385

[Close]
BLAST of Bhi12G000673 vs. TAIR10
Match: AT3G57660.1 (nuclear RNA polymerase A1)

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 18/43 (41.86%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIEL 44
           KEG FR+ ++GKRV+++ RSVI   P ++++  G+P   A++L
Sbjct: 433 KEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKL 475

[Close]
BLAST of Bhi12G000673 vs. TAIR10
Match: AT5G60040.2 (nuclear RNA polymerase C1)

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLP 37
           K GRFR  L GKRV+++GR+VI   P L +   G+P
Sbjct: 359 KGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIP 394

[Close]
BLAST of Bhi12G000673 vs. TrEMBL
Match: tr|X2F7V3|X2F7V3_LAGSI (DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. TrEMBL
Match: tr|A0A286NFS7|A0A286NFS7_CUCME (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 364 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 423

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 424 IGVAKSKIREKEPIV 438

[Close]
BLAST of Bhi12G000673 vs. TrEMBL
Match: tr|A0A249RY22|A0A249RY22_CUCME (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 364 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 423

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 424 IGVAKSKIREKEPIV 438

[Close]
BLAST of Bhi12G000673 vs. TrEMBL
Match: tr|A0A1P8LFF8|A0A1P8LFF8_CITLA (DNA-directed RNA polymerase subunit gamma OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 364 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 423

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 424 IGVAKSKIREKEPIV 438

[Close]
BLAST of Bhi12G000673 vs. TrEMBL
Match: tr|A0A218KG20|A0A218KG20_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. NCBI nr
Match: CAJ00749.1 (RNA polymerase beta chain (chloroplast) [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 370 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 429

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 430 IGVAKSKIREKEPIV 444

[Close]
BLAST of Bhi12G000673 vs. NCBI nr
Match: AHM88680.1 (RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89029.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89088.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89147.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89206.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89265.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89325.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89384.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89443.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89502.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89562.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89621.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89680.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89739.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89798.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89857.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89916.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90034.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90093.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90152.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90211.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90270.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90329.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90388.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90447.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90506.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90565.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90624.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90683.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90742.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90801.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90860.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90919.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM90978.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM91037.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM91270.1 RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. NCBI nr
Match: AHM88739.1 (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. NCBI nr
Match: AHM88797.1 (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

[Close]
BLAST of Bhi12G000673 vs. NCBI nr
Match: AHM88855.1 (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   KEGRFRETLLGKRVDYSGRSVIVVSPPLSLHRCGLPRKIAIELFQTFLIRGLIRQHFASN 60
           KEGRFRETLLGKRVDYSGRSVIVV P LSLHRCGLPR+IAIELFQTFLIRGLIRQHFASN
Sbjct: 363 KEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASN 422

Query: 61  IGVAKSKIREKEPIV 76
           IGVAKSKIREKEPIV
Sbjct: 423 IGVAKSKIREKEPIV 437

The following BLAST results are available for this feature:
BLAST of Bhi12G000673 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZP2|RPOC1_CUCSA2.9e-3496.00DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE... [more]
sp|Q09X26|RPOC1_MORIN8.5e-3493.33DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=... [more]
sp|Q8HVY4|RPOC1_SOYBN1.1e-3393.33DNA-directed RNA polymerase subunit beta' OS=Glycine max OX=3847 GN=rpoC1 PE=3 S... [more]
sp|Q8S8Y0|RPOC1_ATRBE3.2e-3393.33DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1... [more]
sp|A7Y3B6|RPOC1_IPOPU3.2e-3393.33DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea OX=4121 GN=rpoC1 P... [more]
BLAST of Bhi12G000673 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.11.5e-3390.67DNA-directed RNA polymerase family protein[more]
AT4G35800.13.5e-0648.84RNA polymerase II large subunit[more]
AT3G57660.14.3e-0441.86nuclear RNA polymerase A1[more]
AT5G60040.24.3e-0450.00nuclear RNA polymerase C1[more]
BLAST of Bhi12G000673 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|X2F7V3|X2F7V3_LAGSI5.9e-3296.00DNA-directed RNA polymerase subunit beta' OS=Lagenaria siceraria OX=3668 GN=rpoC... [more]
tr|A0A286NFS7|A0A286NFS7_CUCME5.9e-3296.00DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. flexuosus OX=1120... [more]
tr|A0A249RY22|A0A249RY22_CUCME5.9e-3296.00DNA-directed RNA polymerase subunit beta' OS=Cucumis melo subsp. agrestis OX=217... [more]
tr|A0A1P8LFF8|A0A1P8LFF8_CITLA5.9e-3296.00DNA-directed RNA polymerase subunit gamma OS=Citrullus lanatus subsp. vulgaris O... [more]
tr|A0A218KG20|A0A218KG20_CUCSA5.9e-3296.00DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=... [more]
BLAST of Bhi12G000673 vs. NCBI nr
Match NameE-valueIdentityDescription
CAJ00749.18.9e-3296.00RNA polymerase beta chain (chloroplast) [Cucumis sativus][more]
AHM88680.18.9e-3296.00RNA polymerase beta (chloroplast) [Lagenaria siceraria] >AHM89029.1 RNA polymera... [more]
AHM88739.18.9e-3296.00RNA polymerase beta (chloroplast) [Lagenaria siceraria][more]
AHM88797.18.9e-3296.00RNA polymerase beta (chloroplast) [Lagenaria siceraria][more]
AHM88855.18.9e-3296.00RNA polymerase beta (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000722RNA_pol_asu
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000673Bhi12M000673mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 11..59
e-value: 2.3E-8
score: 34.4
NoneNo IPR availableGENE3DG3DSA:2.40.40.20coord: 1..73
e-value: 1.8E-14
score: 56.0
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..61
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..73