Bhi12G000632 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G000632
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	LRR receptor-like serine/threonine-protein kinase GSO1
Location	chr12 : 21240042 .. 21240572 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTAAAACAAGTTGTGTCTATAGATATAACCATTACATGCAAGTCGAGATCATTCACAAGTTGTTTATAATTAGATTTTTAGGTGAAAAGTTTGTTTTACCCATATTATTACATCGTACACCTTAAATATCAATACAAAATTGATATTTACAAATCACCGTGGCTAAAATTATGAAAGGAAAAAGTTGCACTAAAGTTCATTTATTATATAAAATGAGCTCAACTCCTGACCAAATTCATTACATTATTACTCGGTACTTGAATTTCTTCGCAAAATGAGGAAACTTTCAGTAAAAACTTCAATTGTATTGTGTGTATTATCCATAATGCTTCTGCTCCAATTTTGTTTCTCCATAGCTTGCATCCAAAAGGAGCGTGAAGCTCTTCTTCAATTCAAGAAAAGCTTGATGGATCCTTCTCATCGCTTGGTTTCGTGGAATGGAATAGATTGTTGTAATTGGAATGGAGTGAGTTGCAATCAAACAATTGGACGTATTACTATGATTGATCTTCGAAGCGATTATCAA

mRNA sequence

ATGCCTTGCATCCAAAAGGAGCGTGAAGCTCTTCTTCAATTCAAGAAAAGCTTGATGGATCCTTCTCATCGCTTGGTTTCGTGGAATGGAATAGATTGTTGTAATTGGAATGGAGTGAGTTGCAATCAAACAATTGGACGTATTACTATGATTGATCTTCGAAGCGATTATCAA

Coding sequence (CDS)

ATGCCTTGCATCCAAAAGGAGCGTGAAGCTCTTCTTCAATTCAAGAAAAGCTTGATGGATCCTTCTCATCGCTTGGTTTCGTGGAATGGAATAGATTGTTGTAATTGGAATGGAGTGAGTTGCAATCAAACAATTGGACGTATTACTATGATTGATCTTCGAAGCGATTATCAA

Protein sequence

MPCIQKEREALLQFKKSLMDPSHRLVSWNGIDCCNWNGVSCNQTIGRITMIDLRSDYQ

Homology

[Close]

BLAST of Bhi12G000632 vs. Swiss-Prot
Match: sp|Q6JN46|EIX2_SOLLC (Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-04
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLMDPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSD 57
          CI+KER+ALL+FK+ L D   RL +W +  +CC       ++  G + ++DL S+
Sbjct: 35 CIEKERDALLEFKRGLNDDFGRLSTWGDEEECCNWKGIECDKRTGHVIVLDLHSE 89

[Close]

BLAST of Bhi12G000632 vs. Swiss-Prot
Match: sp|Q6JN47|EIX1_SOLLC (Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-04
Identity = 20/59 (33.90%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLMDPSHRLVSW----NGIDCCXXXXXXXNQTIGRITMIDLRSDY 58
          C+ KER+ALL+FK+ L D    L +W    +  +CC       ++  G +T+IDL + +
Sbjct: 34 CLDKERDALLEFKRGLTDSFDHLSTWGDEEDKQECCKWKGIECDRRTGHVTVIDLHNKF 92

[Close]

BLAST of Bhi12G000632 vs. TAIR10
Match: AT2G34930.1 (disease resistance family protein / LRR family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-07
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLMDPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          CI  ER+ALL F+ +L D S RL SW+G DCC       +     +  IDLR+  Q
Sbjct: 33 CISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPSQ 88

[Close]

BLAST of Bhi12G000632 vs. TAIR10
Match: AT2G25470.1 (receptor like protein 21)

HSP 1 Score: 41.6 bits (96), Expect = 1.9e-04
Identity = 24/64 (37.50%), Postives = 31/64 (48.44%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLMDPSHR------LVSWNG---IDCCXXXXXXXNQTIGRITMIDL 58
          CI+KEREALL+ KK LM  S        L +W      DCC       N+T GR+  + +
Sbjct: 13 CIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTKSDCCQWDGIKCNRTSGRVIELSV 72

[Close]

BLAST of Bhi12G000632 vs. TrEMBL
Match: tr|A0A0A0KL22|A0A0A0KL22_CUCSA (Serine/threonine-protein kinase bri1 OS=Cucumis sativus OX=3659 GN=Csa_5G167740 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSDY 58
          CIQKEREALL+FK S   DP HRL SWNG DCC XXX   NQT G +T+IDLR DY
Sbjct: 33 CIQKEREALLRFKNSFYEDPFHRLASWNGTDCCNXXXVGCNQTTGYVTIIDLRQDY 88

[Close]

BLAST of Bhi12G000632 vs. TrEMBL
Match: tr|A0A1S4E676|A0A1S4E676_CUCME (receptor-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483053 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          C+QKE EALLQFK S   DPSHRL SWNG DCC       +Q  G +T+IDLR DYQ
Sbjct: 33 CVQKECEALLQFKNSFYDDPSHRLASWNGTDCCNWNGVGCHQITGHVTIIDLRYDYQ 89

[Close]

BLAST of Bhi12G000632 vs. TrEMBL
Match: tr|A0A1S3AV79|A0A1S3AV79_CUCME (probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucumis melo OX=3656 GN=LOC103483049 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          CIQKER+ALLQFK S   DPSHRL SW NG DCC       NQT G +T+IDLR D+Q
Sbjct: 19 CIQKERKALLQFKNSFYDDPSHRLASWNNGTDCCNWNEVGCNQTTGYVTIIDLRRDFQ 76

[Close]

BLAST of Bhi12G000632 vs. TrEMBL
Match: tr|A0A1S3CT79|A0A1S3CT79_CUCME (receptor-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103504677 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSL-MDPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          CIQKEREALLQFK S   DPSHRL SW NG DCC       +Q  G +T+IDLR DYQ
Sbjct: 38 CIQKEREALLQFKNSFYKDPSHRLASWNNGTDCCNWKGVGCSQITGHVTIIDLRYDYQ 95

[Close]

BLAST of Bhi12G000632 vs. TrEMBL
Match: tr|A0A1S4E650|A0A1S4E650_CUCME (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC103504704 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSL-MDPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSD 57
          CIQKEREALLQFK S   DPSHRL SW NG DCC       NQ  G +T+IDLR D
Sbjct: 19 CIQKEREALLQFKNSFYKDPSHRLASWNNGTDCCNWKGVGCNQITGHVTIIDLRLD 74

[Close]

BLAST of Bhi12G000632 vs. NCBI nr
Match: XP_022929098.1 (probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLMDPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSD 57
          CIQKEREALLQFK S  DPS+RLVSW G +CC       NQT G +TMIDLR++
Sbjct: 17 CIQKEREALLQFKNSFDDPSYRLVSWRGTNCCNWYGVGCNQTTGHVTMIDLRNN 70

[Close]

BLAST of Bhi12G000632 vs. NCBI nr
Match: KGN50333.1 (Serine/threonine-protein kinase bri1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSDY 58
          CIQKEREALL+FK S   DP HRL SWNG DCC XXX   NQT G +T+IDLR DY
Sbjct: 33 CIQKEREALLRFKNSFYEDPFHRLASWNGTDCCNXXXVGCNQTTGYVTIIDLRQDY 88

[Close]

BLAST of Bhi12G000632 vs. NCBI nr
Match: XP_016903722.1 (PREDICTED: receptor-like protein 12 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSWNGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          C+QKE EALLQFK S   DPSHRL SWNG DCC       +Q  G +T+IDLR DYQ
Sbjct: 33 CVQKECEALLQFKNSFYDDPSHRLASWNGTDCCNWNGVGCHQITGHVTIIDLRYDYQ 89

[Close]

BLAST of Bhi12G000632 vs. NCBI nr
Match: XP_008437704.1 (PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSLM-DPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          CIQKER+ALLQFK S   DPSHRL SW NG DCC       NQT G +T+IDLR D+Q
Sbjct: 19 CIQKERKALLQFKNSFYDDPSHRLASWNNGTDCCNWNEVGCNQTTGYVTIIDLRRDFQ 76

[Close]

BLAST of Bhi12G000632 vs. NCBI nr
Match: XP_008467297.1 (PREDICTED: receptor-like protein 12 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 3  CIQKEREALLQFKKSL-MDPSHRLVSW-NGIDCCXXXXXXXNQTIGRITMIDLRSDYQ 59
          CIQKEREALLQFK S   DPSHRL SW NG DCC       +Q  G +T+IDLR DYQ
Sbjct: 38 CIQKEREALLQFKNSFYKDPSHRLASWNNGTDCCNWKGVGCSQITGHVTIIDLRYDYQ 95

The following BLAST results are available for this feature:

BLAST of Bhi12G000632 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6JN46\|EIX2_SOLLC	1.1e-04	38.18	Receptor-like protein EIX2 OS=Solanum lycopersicum OX=4081 GN=EIX2 PE=1 SV=2	[more]
sp\|Q6JN47\|EIX1_SOLLC	4.2e-04	33.90	Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2	[more]

BLAST of Bhi12G000632 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34930.1	1.9e-07	42.86	disease resistance family protein / LRR family protein	[more]
AT2G25470.1	1.9e-04	37.50	receptor like protein 21	[more]

BLAST of Bhi12G000632 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KL22\|A0A0A0KL22_CUCSA	1.5e-11	69.64	Serine/threonine-protein kinase bri1 OS=Cucumis sativus OX=3659 GN=Csa_5G167740 ...	[more]
tr\|A0A1S4E676\|A0A1S4E676_CUCME	5.8e-11	61.40	receptor-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483053 PE=4 SV=1	[more]
tr\|A0A1S3AV79\|A0A1S3AV79_CUCME	7.6e-11	63.79	probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucumis m...	[more]
tr\|A0A1S3CT79\|A0A1S3CT79_CUCME	1.3e-10	63.79	receptor-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103504677 PE=4 SV=1	[more]
tr\|A0A1S4E650\|A0A1S4E650_CUCME	8.4e-10	64.29	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ...	[more]

BLAST of Bhi12G000632 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929098.1	1.4e-11	64.81	probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucurbita m...	[more]
KGN50333.1	2.3e-11	69.64	Serine/threonine-protein kinase bri1 [Cucumis sativus]	[more]
XP_016903722.1	8.8e-11	61.40	PREDICTED: receptor-like protein 12 [Cucumis melo]	[more]
XP_008437704.1	1.1e-10	63.79	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [...	[more]
XP_008467297.1	2.0e-10	63.79	PREDICTED: receptor-like protein 12 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR013210	LRR_N_plant-typ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000632	Bhi12M000632	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 6..42 e-value: 4.8E-15 score: 55.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..57 e-value: 1.9E-15 score: 58.7
None	No IPR available	PANTHER	PTHR27004	FAMILY NOT NAMED	coord: 2..54
None	No IPR available	PANTHER	PTHR27004:SF101	SUBFAMILY NOT NAMED	coord: 2..54

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G000632	Cucumber (Gy14) v2	cgybwgoB419
Bhi12G000632	Cucurbita maxima (Rimu)	cmawgoB0372
Bhi12G000632	Cucurbita maxima (Rimu)	cmawgoB0714
Bhi12G000632	Cucurbita moschata (Rifu)	cmowgoB0365
Bhi12G000632	Cucurbita moschata (Rifu)	cmowgoB0707
Bhi12G000632	Cucurbita pepo (Zucchini)	cpewgoB0233
Bhi12G000632	Cucurbita pepo (Zucchini)	cpewgoB0919
Bhi12G000632	Wild cucumber (PI 183967)	cpiwgoB444
Bhi12G000632	Cucumber (Chinese Long) v3	cucwgoB454
Bhi12G000632	Cucumber (Chinese Long) v2	cuwgoB444
Bhi12G000632	Bottle gourd (USVL1VR-Ls)	lsiwgoB001
Bhi12G000632	Watermelon (Charleston Gray)	wcgwgoB199
Bhi12G000632	Watermelon (97103) v1	wgowmB056
Bhi12G000632	Silver-seed gourd	carwgoB0834