Bhi12G000620 (gene) Wax gourd

Overview
NameBhi12G000620
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr12 : 21029040 .. 21029577 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTGAGGATGGACATGCATCACCCGTTGAGCAAGTCATCGAGGGCCTCATCACTCGAGGACATAAGGAACATCACTCCCCAACCAAGTGCTCAAAATCTAAAGGTCAAGCTGTAAGAGAGCACGTTGATGCTCGCCTTACCAATCTTGAGCAAGGGTTGGAAGATGTTCAACTCACTGTTGGTAGTGACGATTATGATAGGTTAGTCTAAGAGAATGTCGAGAGCCCATGATATGATCGAGGAGCTTGGACAAGCATTTAGAAAGGAAATCAGTATGCTAACAACCGAGGTGGCCGACCTACGAAAGTTCGTCAAAGGTAAGATTAACGAACTTTACTCCTAAATAAATAATGTTCGAGCCAAGTATAGGACATCTCAAAATGCTAATGACCCGACCTCCACTAACAACATCCCTACTGCGTCCGGTGCGTCCGACCTTAAGGTGTCCAAGTCGGACACTTATAATGGCACTCGTAATGGCATAATGGTAGAAAATTTTCTATTTAGGCTCGAGCAATACTTGAAGCTCTAA

mRNA sequence

ATGGCAACTGAGGATGGACATGCATCACCCGTTGAGCAAGTCATCGAGGGCCTCATCACTCGAGGACATAAGGAACATCACTCCCCAACCAAGTGCTCAAAATCTAAAGGTCAAGCTGTAAGAGAGCACGTTGATGCTCGCCTTACCAATCTTGAGCAAGGGTTGGAAGATGTTCAACTCACTGTTGGTAGTGACGATTATGATAGGACATCTCAAAATGCTAATGACCCGACCTCCACTAACAACATCCCTACTGCGTCCGGTGCGTCCGACCTTAAGGTGTCCAAGTCGGACACTTATAATGGCACTCGTAATGGCATAATGGTAGAAAATTTTCTATTTAGGCTCGAGCAATACTTGAAGCTCTAA

Coding sequence (CDS)

ATGGCAACTGAGGATGGACATGCATCACCCGTTGAGCAAGTCATCGAGGGCCTCATCACTCGAGGACATAAGGAACATCACTCCCCAACCAAGTGCTCAAAATCTAAAGGTCAAGCTGTAAGAGAGCACGTTGATGCTCGCCTTACCAATCTTGAGCAAGGGTTGGAAGATGTTCAACTCACTGTTGGTAGTGACGATTATGATAGGACATCTCAAAATGCTAATGACCCGACCTCCACTAACAACATCCCTACTGCGTCCGGTGCGTCCGACCTTAAGGTGTCCAAGTCGGACACTTATAATGGCACTCGTAATGGCATAATGGTAGAAAATTTTCTATTTAGGCTCGAGCAATACTTGAAGCTCTAA

Protein sequence

MATEDGHASPVEQVIEGLITRGHKEHHSPTKCSKSKGQAVREHVDARLTNLEQGLEDVQLTVGSDDYDRTSQNANDPTSTNNIPTASGASDLKVSKSDTYNGTRNGIMVENFLFRLEQYLKL
Homology
[Close]
BLAST of Bhi12G000620 vs. TrEMBL
Match: tr|A0A1S3BG92|A0A1S3BG92_CUCME (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 76/188 (40.43%), Postives = 90/188 (47.87%), Query Frame = 0 

Query: 1   MATEDGHASPVEQVIEGLITRGHKEHHSPTKCSKSKGQAVREHVDARLTNLEQGLEDVQL 60
           M+ E+GH SPVEQVIEG +TRG KE HSPT+ SKSKG AVREHVD RLTNLEQG+EDVQL
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGS-----------------------DDYDRTSQN------------------------ 120
            VG                        +D  RT Q                         
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLH 120

[Close]
BLAST of Bhi12G000620 vs. TrEMBL
Match: tr|A0A1S3B5C5|A0A1S3B5C5_CUCME (uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-17
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 1  MATEDGHASPVEQVIEGLITRGHKEHHSPTKCSKSKGQAVREHVDARLTNLEQGLEDVQL 60
          M+ E+GH SPVEQVIEG +TRG KE HS T+ SKSKG AVREHV+ RLTNLEQG+EDVQL
Sbjct: 1  MSAEEGHTSPVEQVIEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQL 60

Query: 61 TVG--SDDYDRTSQNANDPTS 80
           VG  SD+++   Q   + TS
Sbjct: 61 AVGRLSDNFEELVQENAEITS 81

[Close]
BLAST of Bhi12G000620 vs. NCBI nr
Match: XP_008446938.1 (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 76/188 (40.43%), Postives = 90/188 (47.87%), Query Frame = 0 

Query: 1   MATEDGHASPVEQVIEGLITRGHKEHHSPTKCSKSKGQAVREHVDARLTNLEQGLEDVQL 60
           M+ E+GH SPVEQVIEG +TRG KE HSPT+ SKSKG AVREHVD RLTNLEQG+EDVQL
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGS-----------------------DDYDRTSQN------------------------ 120
            VG                        +D  RT Q                         
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNLH 120

[Close]
BLAST of Bhi12G000620 vs. NCBI nr
Match: XP_008442289.1 (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 1  MATEDGHASPVEQVIEGLITRGHKEHHSPTKCSKSKGQAVREHVDARLTNLEQGLEDVQL 60
          M+ E+GH SPVEQVIEG +TRG KE HS T+ SKSKG AVREHV+ RLTNLEQG+EDVQL
Sbjct: 1  MSAEEGHTSPVEQVIEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQL 60

Query: 61 TVG--SDDYDRTSQNANDPTS 80
           VG  SD+++   Q   + TS
Sbjct: 61 AVGRLSDNFEELVQENAEITS 81

The following BLAST results are available for this feature:
BLAST of Bhi12G000620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G000620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G000620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BG92|A0A1S3BG92_CUCME8.2e-2340.43uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=... [more]
tr|A0A1S3B5C5|A0A1S3B5C5_CUCME3.0e-1764.20uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=... [more]
BLAST of Bhi12G000620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446938.11.2e-2240.43PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo][more]
XP_008442289.14.5e-1764.20PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000620Bhi12M000620mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..100

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G000620Silver-seed gourdcarwgoB0833
Bhi12G000620Cucumber (Gy14) v1cgywgoB240
Bhi12G000620Cucumber (Gy14) v2cgybwgoB419
Bhi12G000620Cucumber (Gy14) v2cgybwgoB433
Bhi12G000620Cucurbita maxima (Rimu)cmawgoB0714
Bhi12G000620Cucurbita maxima (Rimu)cmawgoB0724
Bhi12G000620Cucurbita moschata (Rifu)cmowgoB0365
Bhi12G000620Cucurbita moschata (Rifu)cmowgoB0371
Bhi12G000620Cucurbita moschata (Rifu)cmowgoB0707
Bhi12G000620Cucurbita moschata (Rifu)cmowgoB0717
Bhi12G000620Cucurbita pepo (Zucchini)cpewgoB0225
Bhi12G000620Cucurbita pepo (Zucchini)cpewgoB0915
Bhi12G000620Cucurbita pepo (Zucchini)cpewgoB0919
Bhi12G000620Wild cucumber (PI 183967)cpiwgoB444
Bhi12G000620Wild cucumber (PI 183967)cpiwgoB460
Bhi12G000620Cucumber (Chinese Long) v3cucwgoB454
Bhi12G000620Cucumber (Chinese Long) v3cucwgoB469
Bhi12G000620Cucumber (Chinese Long) v2cuwgoB444
Bhi12G000620Cucumber (Chinese Long) v2cuwgoB457
Bhi12G000620Bottle gourd (USVL1VR-Ls)lsiwgoB001
Bhi12G000620Bottle gourd (USVL1VR-Ls)lsiwgoB032
Bhi12G000620Melon (DHL92) v3.6.1medwgoB006
Bhi12G000620Melon (DHL92) v3.5.1mewgoB008
Bhi12G000620Watermelon (Charleston Gray)wcgwgoB202
Bhi12G000620Watermelon (Charleston Gray)wcgwgoB199
Bhi12G000620Watermelon (97103) v2wgowmbB066
Bhi12G000620Watermelon (97103) v1wgowmB056
Bhi12G000620Watermelon (97103) v1wgowmB082
Bhi12G000620Silver-seed gourdcarwgoB0834
Bhi12G000620Silver-seed gourdcarwgoB1212