Bhi12G000529 (gene) Wax gourd

NameBhi12G000529
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionacidic endochitinase-like
Locationchr12 : 18642119 .. 18642639 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGCCTTCCTGAGCAACCAAATCAAATCTTCCCAAAGTCGAGGAATCAAAGTCCTCCTCTCCATCGGTGGCGCGCCAGGGAGTTATTCACTTCCTCCGCTGACGATGCAAGACAAGTCGCTAATTTCATTGGAACAACTACCTTGGCGGTCATCGAGCTCACGACCCCTCGGTAATTGCGTTTTGGAGGTGTTATTTCGATATCGAAGCTGGCTCTGGCCAATTCTGGACGTACTGGCTCAACAACTGAAGAACAAGGCCGAGTCATTCTCGCCGCCGCACCACAGTGTCCGATCCCCACGCGCACTTAGACGCCGCTATTAAAACTGGTTTGTTTGATTCTTTGGGTTCAATTCTACAACAAACCGCCATGTATGTATGCAAATGGAAACACCAACAATCTCCTGAATTCTTGGAACCGGTGGACGGGGTTTCCGGTTGGAAGCTGTACATGGGGCTACCAGCGGCACCTGCACCACGCCCTAGCGGCGGCTTTATTTCCGGACCAACGTGCTAA

mRNA sequence

ATGGTGCGCCTTCCTGAGCAACCAAATCAAATCTTCCCAAAGTCGAGGAATCAAAGTCCTCCTCTCCATCGGTGGCGCGCCAGGGAGTTATTCACTTCCTCCGCTGACGATGCAAGACAAGTCGCTAATTTCATTGGAACAACTACCTTGGCGGTCATCGAGCTCACGACCCCTCGAACAAGGCCGAGTCATTCTCGCCGCCGCACCACAGTGTCCGATCCCCACGCGCACTTAGACGCCGCTATTAAAACTGGTTTGTTTGATTCTTTGGGTTCAATTCTACAACAAACCGCCATGTATGTATGCAAATGGAAACACCAACAATCTCCTGAATTCTTGGAACCGGTGGACGGGGTTTCCGGTTGGAAGCTGTACATGGGGCTACCAGCGGCACCTGCACCACGCCCTAGCGGCGGCTTTATTTCCGGACCAACGTGCTAA

Coding sequence (CDS)

ATGGTGCGCCTTCCTGAGCAACCAAATCAAATCTTCCCAAAGTCGAGGAATCAAAGTCCTCCTCTCCATCGGTGGCGCGCCAGGGAGTTATTCACTTCCTCCGCTGACGATGCAAGACAAGTCGCTAATTTCATTGGAACAACTACCTTGGCGGTCATCGAGCTCACGACCCCTCGAACAAGGCCGAGTCATTCTCGCCGCCGCACCACAGTGTCCGATCCCCACGCGCACTTAGACGCCGCTATTAAAACTGGTTTGTTTGATTCTTTGGGTTCAATTCTACAACAAACCGCCATGTATGTATGCAAATGGAAACACCAACAATCTCCTGAATTCTTGGAACCGGTGGACGGGGTTTCCGGTTGGAAGCTGTACATGGGGCTACCAGCGGCACCTGCACCACGCCCTAGCGGCGGCTTTATTTCCGGACCAACGTGCTAA

Protein sequence

MVRLPEQPNQIFPKSRNQSPPLHRWRARELFTSSADDARQVANFIGTTTLAVIELTTPRTRPSHSRRRTTVSDPHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDGVSGWKLYMGLPAAPAPRPSGGFISGPTC
BLAST of Bhi12G000529 vs. Swiss-Prot
Match: sp|P17541|CHIA_CUCSA (Acidic endochitinase OS=Cucumis sativus OX=3659 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.2e-05
Identity = 49/148 (33.11%), Postives = 62/148 (41.89%), Query Frame = 0

Query: 33  SSADDARQVANFIGTTTL-----------AVIELTTPRTRPSHSRRRTTVSD-------- 92
           SSADDA+QVANFI  + L           AV++           +    ++         
Sbjct: 113 SSADDAKQVANFIWNSYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFGQV 172

Query: 93  ----------PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDG-VSGW 142
                     P AHLDAAIKTGLFDS+            ++ +     F +  D  +S W
Sbjct: 173 ILSAAPQCPIPDAHLDAAIKTGLFDSVW----------VQFYNNPPCMFADNADNLLSSW 232

BLAST of Bhi12G000529 vs. TrEMBL
Match: tr|Q39657|Q39657_CUCSA (ORF 3 OS=Cucumis sativus OX=3659 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 0

Query: 74  PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDGV-SGW---------K 133
           P AHLDAAI+TGLFDS+            ++ +  S  + +  D + S W         K
Sbjct: 183 PDAHLDAAIRTGLFDSVW----------VQFYNNPSCMYADNTDDILSSWNQWAAYPILK 242

Query: 134 LYMGLPAAPAPRPSGGFI 142
           LYMGLPAAP   PSGGFI
Sbjct: 243 LYMGLPAAPEAAPSGGFI 250

BLAST of Bhi12G000529 vs. TrEMBL
Match: tr|Q9M544|Q9M544_CUCME (Chitinase 1 OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 50/148 (33.78%), Postives = 63/148 (42.57%), Query Frame = 0

Query: 33  SSADDARQVANFIGTTTLAVIELTTP-----------------------RTRPSHSRRRT 92
           SSADDARQVANF+  + L     + P                         +   S  + 
Sbjct: 113 SSADDARQVANFLWNSYLGGQSDSRPLGAAVLNGIDFDIESGSGQFWDVLAQELKSFGQV 172

Query: 93  TVSD------PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDG-VSGW 142
            +S       P AHLDAA+KTGLFDS+            ++ +     F +  D  +S W
Sbjct: 173 ILSAAPQCPIPDAHLDAAVKTGLFDSVW----------VQFYNNPPCMFADNADNLLSSW 232

BLAST of Bhi12G000529 vs. TrEMBL
Match: tr|A0A1S3AUB6|A0A1S3AUB6_CUCME (acidic endochitinase-like OS=Cucumis melo OX=3656 GN=LOC103482937 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 74  PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDGVSGW---KLYMGLPA 133
           P AHLDAAIKTGLFD +   +Q      C + +      L   +  +G+   KLYMGLPA
Sbjct: 185 PDAHLDAAIKTGLFDFVW--VQFYNNPPCMYANGNVNNLLNSWNRWTGFPVGKLYMGLPA 244

Query: 134 APAPRPSGGFI 142
           A A  PSGGFI
Sbjct: 245 ASAAAPSGGFI 253

BLAST of Bhi12G000529 vs. NCBI nr
Match: AAC37396.1 (ORF 3 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 0

Query: 74  PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDGV-SGW---------K 133
           P AHLDAAI+TGLFDS+            ++ +  S  + +  D + S W         K
Sbjct: 183 PDAHLDAAIRTGLFDSVW----------VQFYNNPSCMYADNTDDILSSWNQWAAYPILK 242

Query: 134 LYMGLPAAPAPRPSGGFI 142
           LYMGLPAAP   PSGGFI
Sbjct: 243 LYMGLPAAPEAAPSGGFI 250

BLAST of Bhi12G000529 vs. NCBI nr
Match: NP_001315368.1 (acidic endochitinase precursor [Cucumis melo] >AAF64474.1 chitinase 1 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 9.0e-04
Identity = 50/148 (33.78%), Postives = 63/148 (42.57%), Query Frame = 0

Query: 33  SSADDARQVANFIGTTTLAVIELTTP-----------------------RTRPSHSRRRT 92
           SSADDARQVANF+  + L     + P                         +   S  + 
Sbjct: 113 SSADDARQVANFLWNSYLGGQSDSRPLGAAVLNGIDFDIESGSGQFWDVLAQELKSFGQV 172

Query: 93  TVSD------PHAHLDAAIKTGLFDSLGSILQQTAMYVCKWKHQQSPEFLEPVDG-VSGW 142
            +S       P AHLDAA+KTGLFDS+            ++ +     F +  D  +S W
Sbjct: 173 ILSAAPQCPIPDAHLDAAVKTGLFDSVW----------VQFYNNPPCMFADNADNLLSSW 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|P17541|CHIA_CUCSA3.2e-0533.11Acidic endochitinase OS=Cucumis sativus OX=3659 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|Q39657|Q39657_CUCSA4.6e-0443.59ORF 3 OS=Cucumis sativus OX=3659 PE=3 SV=1[more]
tr|Q9M544|Q9M544_CUCME5.9e-0433.78Chitinase 1 OS=Cucumis melo OX=3656 PE=2 SV=1[more]
tr|A0A1S3AUB6|A0A1S3AUB6_CUCME7.8e-0447.89acidic endochitinase-like OS=Cucumis melo OX=3656 GN=LOC103482937 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AAC37396.16.9e-0443.59ORF 3 [Cucumis sativus][more]
NP_001315368.19.0e-0433.78acidic endochitinase precursor [Cucumis melo] >AAF64474.1 chitinase 1 [Cucumis m... [more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000529Bhi12M000529mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None