Bhi12G000305 (gene) Wax gourd

Overview
NameBhi12G000305
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionnucleolar complex protein 4 homolog
Locationchr12 : 9731804 .. 9731965 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

mRNA sequence

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Coding sequence (CDS)

TTGAAAAAGAAACTAAAGCGAGTCCCTCTGGCATTCTACCAAGCACCCCCCACCACCTTGTTCTTGGAGTCTGATTTCGCTGGTTGGAGTTTCGATCACGAACACAGTGAGAAGAATATTAATGGTAGCGATCATCTTTCGGTAAAACAAGACAGCGCGTAG

Protein sequence

LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQDSA
Homology
[Close]
BLAST of Bhi12G000305 vs. TAIR10
Match: AT2G17250.1 (CCAAT-binding factor)

HSP 1 Score: 46.6 bits (109), Expect = 5.5e-06
Identity = 17/31 (54.84%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSF 32
           +++++K+VPLAFY+  PT+LF +SDF GW+F
Sbjct: 538 IRRRVKQVPLAFYKTVPTSLFADSDFPGWTF 568

[Close]
BLAST of Bhi12G000305 vs. TrEMBL
Match: tr|A0A0A0K685|A0A0A0K685_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi12G000305 vs. TrEMBL
Match: tr|A0A1S3BIC0|A0A1S3BIC0_CUCME (nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi12G000305 vs. TrEMBL
Match: tr|B9SYR1|B9SYR1_RICCO (Nucleolar complex protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0035800 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKN--INGSDHLSVKQD 52
           L++++K+VPLAF++A PT+LF ESDFAGW+F +E S++N  +NG+   S + D
Sbjct: 588 LRRRVKQVPLAFFKATPTSLFSESDFAGWTFKYEQSKRNDAVNGTSDKSEEND 640

[Close]
BLAST of Bhi12G000305 vs. TrEMBL
Match: tr|A0A067KHD3|A0A067KHD3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08980 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 24/40 (60.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNI 41
           L++++K+VPLAFY+A PT LF ESDFAGW+F +E S++N+
Sbjct: 566 LRRRVKQVPLAFYKATPTLLFSESDFAGWTFKYEESKENV 605

[Close]
BLAST of Bhi12G000305 vs. TrEMBL
Match: tr|A0A1R3JW36|A0A1R3JW36_COCAP (CCAAT-binding factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_03968 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQD 52
           +++++K+VPLAFY+A PT LF ES+F GW+F  E S++N  G+ + S + D
Sbjct: 531 IRRRVKQVPLAFYKATPTCLFSESEFPGWTFKFEESKENDTGNGNTSAEND 581

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_011658634.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hypothetical protein Csa_7G025180 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDFAGWSFD+EHSEKNI+ SDHLS K+
Sbjct: 546 LKKKLKRVPLAFYQAPPTTLFSESDFAGWSFDNEHSEKNIDSSDHLSAKR 595

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_008447831.1 (PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-15
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEK-NINGSDHLSVKQ 51
           LKKKLKRVPLAFYQAPPTTLF ESDF GWSFD+EHS+K NI+GSDHLS K+
Sbjct: 548 LKKKLKRVPLAFYQAPPTTLFSESDFVGWSFDYEHSDKNNIDGSDHLSAKR 598

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_022969033.1 (nucleolar complex protein 4 homolog B [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PT+LF ESDF GWSF+HEHSEKNI+GSDHL  K+
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSESDFPGWSFNHEHSEKNIDGSDHLPAKR 599

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_022136138.1 (nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleolar complex protein 4 homolog [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PTTLF ESDF GWSFDH+HSE NI+ SDHLS K+
Sbjct: 543 LKKKMKRVPLAFYQAIPTTLFSESDFTGWSFDHKHSENNIDDSDHLSAKR 592

[Close]
BLAST of Bhi12G000305 vs. NCBI nr
Match: XP_022952163.1 (nucleolar complex protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   LKKKLKRVPLAFYQAPPTTLFLESDFAGWSFDHEHSEKNINGSDHLSVKQ 51
           LKKK+KRVPLAFYQA PT+LF  SDF GWSF+HEHSEKNI+GSDHL  K+
Sbjct: 550 LKKKMKRVPLAFYQAIPTSLFSASDFPGWSFNHEHSEKNIDGSDHLPAKR 599

The following BLAST results are available for this feature:
BLAST of Bhi12G000305 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G000305 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G17250.15.5e-0654.84CCAAT-binding factor[more]
BLAST of Bhi12G000305 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K685|A0A0A0K685_CUCSA1.4e-1688.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G025180 PE=4 SV=1[more]
tr|A0A1S3BIC0|A0A1S3BIC0_CUCME3.5e-1584.31nucleolar complex protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103490206 PE=4... [more]
tr|B9SYR1|B9SYR1_RICCO3.0e-0650.94Nucleolar complex protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0035800 ... [more]
tr|A0A067KHD3|A0A067KHD3_JATCU5.1e-0660.00Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08980 PE=4 SV=1[more]
tr|A0A1R3JW36|A0A1R3JW36_COCAP2.5e-0547.06CCAAT-binding factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_03968 PE=4 SV=... [more]
BLAST of Bhi12G000305 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658634.12.2e-1688.00PREDICTED: nucleolar complex protein 4 homolog [Cucumis sativus] >KGN43346.1 hyp... [more]
XP_008447831.15.4e-1584.31PREDICTED: nucleolar complex protein 4 homolog [Cucumis melo][more]
XP_022969033.12.7e-1480.00nucleolar complex protein 4 homolog B [Cucurbita maxima][more]
XP_022136138.13.5e-1480.00nucleolar complex protein 4 homolog [Momordica charantia] >XP_022136139.1 nucleo... [more]
XP_022952163.11.3e-1378.00nucleolar complex protein 4 homolog [Cucurbita moschata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0030692 Noc4p-Nop14p complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000305Bhi12M000305mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi12G000305Cucumber (Gy14) v1cgywgoB264
Bhi12G000305Cucumber (Gy14) v1cgywgoB509
Bhi12G000305Cucumber (Gy14) v1cgywgoB604
Bhi12G000305Cucumber (Gy14) v2cgybwgoB414
Bhi12G000305Cucumber (Gy14) v2cgybwgoB520
Bhi12G000305Cucurbita maxima (Rimu)cmawgoB0375
Bhi12G000305Cucurbita maxima (Rimu)cmawgoB0462
Bhi12G000305Cucurbita maxima (Rimu)cmawgoB0712
Bhi12G000305Cucurbita moschata (Rifu)cmowgoB0369
Bhi12G000305Cucurbita moschata (Rifu)cmowgoB0705
Bhi12G000305Cucurbita pepo (Zucchini)cpewgoB0179
Bhi12G000305Cucurbita pepo (Zucchini)cpewgoB0219
Bhi12G000305Cucurbita pepo (Zucchini)cpewgoB0920
Bhi12G000305Wild cucumber (PI 183967)cpiwgoB440
Bhi12G000305Wild cucumber (PI 183967)cpiwgoB546
Bhi12G000305Cucumber (Chinese Long) v3cucwgoB449
Bhi12G000305Cucumber (Chinese Long) v3cucwgoB560
Bhi12G000305Cucumber (Chinese Long) v2cuwgoB438
Bhi12G000305Cucumber (Chinese Long) v2cuwgoB543
Bhi12G000305Bottle gourd (USVL1VR-Ls)lsiwgoB019
Bhi12G000305Bottle gourd (USVL1VR-Ls)lsiwgoB010
Bhi12G000305Melon (DHL92) v3.6.1medwgoB010
Bhi12G000305Melon (DHL92) v3.6.1medwgoB099
Bhi12G000305Melon (DHL92) v3.5.1mewgoB014
Bhi12G000305Melon (DHL92) v3.5.1mewgoB098
Bhi12G000305Watermelon (Charleston Gray)wcgwgoB193
Bhi12G000305Watermelon (Charleston Gray)wcgwgoB505
Bhi12G000305Watermelon (97103) v2wgowmbB056
Bhi12G000305Watermelon (97103) v2wgowmbB101
Bhi12G000305Watermelon (97103) v1wgowmB077
Bhi12G000305Silver-seed gourdcarwgoB1063
Bhi12G000305Silver-seed gourdcarwgoB1080