Bhi12G000287 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G000287
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ABC2
Location	chr12 : 8916358 .. 8917373 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTAATATTTTCTAATGTTGATTCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGAAAGATCTTTATGCATTGATTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAACAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAACGTTCAGAATTACAGGTAGTTTCTCTTAGATGGTACATACTGCCCCCAACAAATAATAATGATAATAAAGGGAATTCTTTTATGCTTTTACACAGTGTTATAACCCATCTTGAAACACTATTTTACTTATTTGGTGAAAATCATTATTCTTATAAGTTTGGAAAAACTCTCTTAAAATGAAGTAACTTATTCTTATCACAAGCTTTGCTCTCCTCTCCTCGAGAAAGTTCTAATGATTGCAGTCACCTTAGTAGACTTCTCAACTGGCTATCTAACGACGTTCGACCTTTCTTTCTTCTCAGATGTATGCTTCAGAGTATTTCCCCTAAATCTCAGAGCTCCTTACGAAATTACCACGTGTAATTTTATAGTGGAGGCTGCTACATCATTCTTTACACCTACCACTCTGGTGAGATGAAAGAAGATTATTTCTTGTGCTCTTAGTTTGGAAAGGATAGCATCGAGGTTATTTAGCATTTAGGATTTATTTTGAGAAAATCTAACTATTGTAAGTTATATACTTAAACTTGGAATGTGGTGGTACACTTGCCAATTCAGTTGAATAATAGTGCTGATTCTCTAAGAAAGAGAATAATGGAAGATGGTTTCCTTGATCTAATGAAAGTACTCTTGATTCTTGTAAAAGAATAATTGCTTGTAAACAAGTGTAGGGATGTTTCGTCATTCCTTACATTTTCATATCATGACATATTTAAGTGCATTTGTACATAAATGTATTTGTTTATTGCTGTTAAACAATTTTCTATTATTTCAAACCTCAGGAAGATCAAAAGATGGCTACACGGTTGACGAATACAATGTCCAACTCGCTGAAAGGGAGGCCTGTTTAG

mRNA sequence

GCTTTAATATTTTCTAATGTTGATTCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGAAAGATCTTTATGCATTGATTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAACAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAACGTTCAGAATTACAGGAAGATCAAAAGATGGCTACACGGTTGACGAATACAATGTCCAACTCGCTGAAAGGGAGGCCTGTTTAG

Coding sequence (CDS)

GCTTTAATATTTTCTAATGTTGATTCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGAAAGATCTTTATGCATTGATTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAACAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAACGTTCAGAATTACAGGAAGATCAAAAGATGGCTACACGGTTGACGAATACAATGTCCAACTCGCTGAAAGGGAGGCCTGTTTAG

Protein sequence

ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQEDQKMATRLTNTMSNSLKGRPV

Homology

[Close]

BLAST of Bhi12G000287 vs. Swiss-Prot
Match: sp|O04212|Y2090_ARATH (Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana OX=3702 GN=At2g40090 PE=2 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           AL+FS+  +IKE+S+KLGAG DLY L AGILTM+PW +VID +VDHLVIQG   + SELQ
Sbjct: 375 ALVFSDAKAIKEHSEKLGAGDDLYVLFAGILTMRPWKQVIDTSVDHLVIQGNKEDVSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TAIR10
Match: AT2G40090.1 (ABC2 homolog 9)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-17
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           AL+FS+  +IKE+S+KLGAG DLY L AGILTM+PW +VID +VDHLVIQG   + SELQ
Sbjct: 375 ALVFSDAKAIKEHSEKLGAGDDLYVLFAGILTMRPWKQVIDTSVDHLVIQGNKEDVSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TrEMBL
Match: tr|A0A1S3B319|A0A1S3B319_CUCME (putative ABC1 protein At2g40090 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485571 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRVIDP VDHLVIQGTDNERSELQ
Sbjct: 375 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TrEMBL
Match: tr|A0A1S3B490|A0A1S3B490_CUCME (putative ABC1 protein At2g40090 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485571 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRVIDP VDHLVIQGTDNERSELQ
Sbjct: 375 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TrEMBL
Match: tr|A0A2C9VKY7|A0A2C9VKY7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G128900 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.8e-19
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIF++ +SIKENS KLGAG+DLYAL AGILTM+PW+RV+DPTVDHLVIQ  DNERSELQ
Sbjct: 375 ALIFADANSIKENSVKLGAGEDLYALFAGILTMRPWDRVVDPTVDHLVIQDNDNERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TrEMBL
Match: tr|A0A2I4DSG4|A0A2I4DSG4_9ROSI (putative ABC1 protein At2g40090 OS=Juglans regia OX=51240 GN=LOC108983030 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIF++  +IKENS KLGAG+DLYAL AGILTMKPWNRV+DP VDHLVIQG D++RSELQ
Sbjct: 375 ALIFADAKAIKENSVKLGAGEDLYALFAGILTMKPWNRVVDPAVDHLVIQGADSDRSELQ 434

[Close]

BLAST of Bhi12G000287 vs. TrEMBL
Match: tr|B9T5X6|B9T5X6_RICCO (ATATH9, putative OS=Ricinus communis OX=3988 GN=RCOM_0339590 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           AL+F++  SIKENS KLGAG+DLYAL AGILTM+PWNRV+D  VDHLVIQG DNERSELQ
Sbjct: 384 ALVFADAHSIKENSVKLGAGEDLYALFAGILTMRPWNRVVDSAVDHLVIQGNDNERSELQ 443

[Close]

BLAST of Bhi12G000287 vs. NCBI nr
Match: XP_008441461.1 (PREDICTED: putative ABC1 protein At2g40090 isoform X1 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRVIDP VDHLVIQGTDNERSELQ
Sbjct: 375 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. NCBI nr
Match: XP_008441462.1 (PREDICTED: putative ABC1 protein At2g40090 isoform X2 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRVIDP VDHLVIQGTDNERSELQ
Sbjct: 375 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. NCBI nr
Match: XP_011656411.1 (PREDICTED: LOW QUALITY PROTEIN: putative ABC1 protein At2g40090 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRVIDP VDHLVIQGTDNERSELQ
Sbjct: 379 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQ 438

[Close]

BLAST of Bhi12G000287 vs. NCBI nr
Match: XP_022922341.1 (putative ABC1 protein At2g40090 [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-21
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRV+DP VDHLVIQGTD+ERSELQ
Sbjct: 375 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVVDPAVDHLVIQGTDDERSELQ 434

[Close]

BLAST of Bhi12G000287 vs. NCBI nr
Match: XP_022990850.1 (putative ABC1 protein At2g40090 [Cucurbita maxima])

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-21
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ALIFSNVDSIKENSKKLGAGKDLYALIAGILTMKPWNRVIDPTVDHLVIQGTDNERSELQ 60
           ALIFS+ ++IKENSKKLGAG+DLYAL AGILTMKPWNRV+DP VDHLVIQGTD+ERSELQ
Sbjct: 374 ALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVVDPAVDHLVIQGTDDERSELQ 433

The following BLAST results are available for this feature:

BLAST of Bhi12G000287 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04212\|Y2090_ARATH	3.0e-16	66.67	Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana OX=3702 GN=At2g40090 PE=...	[more]

BLAST of Bhi12G000287 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40090.1	1.7e-17	66.67	ABC2 homolog 9	[more]

BLAST of Bhi12G000287 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B319\|A0A1S3B319_CUCME	7.9e-22	88.33	putative ABC1 protein At2g40090 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034855...	[more]
tr\|A0A1S3B490\|A0A1S3B490_CUCME	7.9e-22	88.33	putative ABC1 protein At2g40090 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034855...	[more]
tr\|A0A2C9VKY7\|A0A2C9VKY7_MANES	4.8e-19	80.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G128900 PE=4 SV=...	[more]
tr\|A0A2I4DSG4\|A0A2I4DSG4_9ROSI	1.1e-18	78.33	putative ABC1 protein At2g40090 OS=Juglans regia OX=51240 GN=LOC108983030 PE=4 S...	[more]
tr\|B9T5X6\|B9T5X6_RICCO	1.4e-18	78.33	ATATH9, putative OS=Ricinus communis OX=3988 GN=RCOM_0339590 PE=4 SV=1	[more]

BLAST of Bhi12G000287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441461.1	1.2e-21	88.33	PREDICTED: putative ABC1 protein At2g40090 isoform X1 [Cucumis melo]	[more]
XP_008441462.1	1.2e-21	88.33	PREDICTED: putative ABC1 protein At2g40090 isoform X2 [Cucumis melo]	[more]
XP_011656411.1	1.2e-21	88.33	PREDICTED: LOW QUALITY PROTEIN: putative ABC1 protein At2g40090 [Cucumis sativus...	[more]
XP_022922341.1	5.9e-21	85.00	putative ABC1 protein At2g40090 [Cucurbita moschata]	[more]
XP_022990850.1	5.9e-21	85.00	putative ABC1 protein At2g40090 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000287	Bhi12M000287	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G000287	Watermelon (97103) v1	wgowmB074
Bhi12G000287	Watermelon (97103) v1	wgowmB084
Bhi12G000287	Silver-seed gourd	carwgoB1059
Bhi12G000287	Silver-seed gourd	carwgoB1081
Bhi12G000287	Cucumber (Gy14) v1	cgywgoB264
Bhi12G000287	Cucumber (Gy14) v1	cgywgoB602
Bhi12G000287	Cucumber (Gy14) v2	cgybwgoB427
Bhi12G000287	Cucumber (Gy14) v2	cgybwgoB520
Bhi12G000287	Cucurbita maxima (Rimu)	cmawgoB0365
Bhi12G000287	Cucurbita maxima (Rimu)	cmawgoB0462
Bhi12G000287	Cucurbita maxima (Rimu)	cmawgoB0719
Bhi12G000287	Cucurbita moschata (Rifu)	cmowgoB0358
Bhi12G000287	Cucurbita moschata (Rifu)	cmowgoB0712
Bhi12G000287	Cucurbita pepo (Zucchini)	cpewgoB0179
Bhi12G000287	Cucurbita pepo (Zucchini)	cpewgoB0226
Bhi12G000287	Cucurbita pepo (Zucchini)	cpewgoB0910
Bhi12G000287	Wild cucumber (PI 183967)	cpiwgoB454
Bhi12G000287	Wild cucumber (PI 183967)	cpiwgoB546
Bhi12G000287	Cucumber (Chinese Long) v3	cucwgoB462
Bhi12G000287	Cucumber (Chinese Long) v3	cucwgoB560
Bhi12G000287	Cucumber (Chinese Long) v2	cuwgoB451
Bhi12G000287	Cucumber (Chinese Long) v2	cuwgoB543
Bhi12G000287	Bottle gourd (USVL1VR-Ls)	lsiwgoB019
Bhi12G000287	Bottle gourd (USVL1VR-Ls)	lsiwgoB022
Bhi12G000287	Melon (DHL92) v3.6.1	medwgoB001
Bhi12G000287	Melon (DHL92) v3.6.1	medwgoB099
Bhi12G000287	Melon (DHL92) v3.5.1	mewgoB003
Bhi12G000287	Melon (DHL92) v3.5.1	mewgoB098
Bhi12G000287	Watermelon (Charleston Gray)	wcgwgoB198
Bhi12G000287	Watermelon (Charleston Gray)	wcgwgoB505
Bhi12G000287	Watermelon (97103) v2	wgowmbB061
Bhi12G000287	Watermelon (97103) v2	wgowmbB084
Bhi12G000287	Watermelon (97103) v2	wgowmbB101